Clone Sequence Records
BO16317.3prime Sequence
644 bp (644 high quality bases) assembled on 2006-10-13
> BO16317.3prime
ATGGTCTAGAAAGCTTGCCTCCATGCTGTCGACAGTTTCCTCGGTAACAA
AGCCCACAATGCTAAATGCAGTTTCCTCGCTGATCCACAGAAGTCCCACG
ATTAGTGCCTCCAACACTCCGATGGCAGCACCGGCGCAGATATCCAAAAT
ATAATGACGCTGGAGGATGAGCCGTGAGATGGCCACGCTTACAGCCCAAG
CTGTGACCGGCATTAGGAATATGATGTGGAGCGGGTACAGCTTGGCGAAG
AACAGGAGCACAAAGAACGCCCGGGAGGCATGACCTGAGGGAAAGCTGAA
CTTATCGGGTCCAATGGTCAGCATATCCTTGCTGGCCACGGGTCGCCTGC
GACGAACCAGCGCCTTCAGCACGGCCACGATCACCACGTCGAGTATCAGG
CCGAAGAGCATATTGACTTGCATTTGATACAAGCTCTTTGAGCTGAGCAA
CCAGATGAAGGCGATCCATGAGACAAACCAGGCGATTCCATCGCATGATA
TCTCCAGAAATCTGCTGTGGATCCGCAGGGATTTGAAGAACGACAGATTG
GAGACGGCTACTACGAAATGCTTCGACACCTGAACATCCTTCTCCAATAG
GTATTTAAGTGCTGGTGATGACGTCCTCATGTCGACTGATAACT
BO16317.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31717-PA | 615 | CG31717-RA | 1..612 | 630..19 | 2860 | 98.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:09:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31717-RB | 854 | CG31717-RB | 23..638 | 634..19 | 2945 | 98.5 | Minus |
| CG31717-RA | 790 | CG31717-RA | 79..694 | 634..19 | 2945 | 98.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:09:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10250895..10251498 | 622..19 | 2900 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:09:40 has no hits.
BO16317.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:44 Download gff for
BO16317.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-PA | 1..615 | 15..630 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:39:47 Download gff for
BO16317.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-RA | 76..697 | 15..638 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:52 Download gff for
BO16317.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-RA | 76..697 | 15..638 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:52 Download gff for
BO16317.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10250895..10251501 | 15..622 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:39:47 Download gff for
BO16317.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10250895..10251501 | 15..622 | 98 | | Minus |
BO16317.5prime Sequence
644 bp (644 high quality bases) assembled on 2006-10-13
> BO16317.5prime
GAAGTTATCAGTCGACATGAGGACGTCATCACCAGCACTTAAATACCTAT
TGGAGAAGGATGTTCAGGTGTCGAAGCATTTCGTAGTAGCCGTCTCCAAT
CTGTCGTTCTTCAAATCCCTGCGGATCCACAGCAGATTTCTGGAGATATC
ATGCGATGGAATCGCCTGGTTTGTCTCATGGATCGCCTTCATCTGGTTGC
TCAGCTCAAAGAGCTTGTATCAAATGCAAGTCAATATGCTCTTCGGCCTG
ATACTCGACGTGGTGATCGTGGCCGTGCTGAAGGCGCTGGTTCGTCGCAG
GCGACCCGTGGCCAGCAAGGATATGCTGACCATTGGACCCGATAAGTTCA
GCTTTCCCTCAGGTCATGCCTCCCGGGCGTTCTTTGTGCTCCTGTTCTTC
GCCAAGCTGTACCCGCTCCACATCATATTCCTAATGCCGGTCACAGCTTG
GGCTGTAAGCGTGGCCATCTCACGGCTCATCCTCCAGCGTCATTATATTT
TGGATATCTGCGCCGGTGCTGCCATCGGAGTGTTGGAGGCACTAATCGTG
GGACTTCTGTGGATCAGCGAGGAAACTGCATTTAGCATTGTGGGCTTTGT
TACCGAGGAAACTGTCGACAGCATGGAGGCAAGCTTTCTAGACC
BO16317.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31717-PA | 615 | CG31717-RA | 1..612 | 17..628 | 2860 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:35:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31717-RB | 854 | CG31717-RB | 23..638 | 13..628 | 2945 | 98.5 | Plus |
| CG31717-RA | 790 | CG31717-RA | 79..694 | 13..628 | 2945 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:35:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10250895..10251498 | 25..628 | 2900 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:35:26 has no hits.
BO16317.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:44 Download gff for
BO16317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-PA | 1..615 | 17..632 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:13 Download gff for
BO16317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-RA | 76..697 | 9..632 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:40:46 Download gff for
BO16317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-RA | 76..697 | 9..632 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:40:46 Download gff for
BO16317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10250895..10251501 | 25..632 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:13 Download gff for
BO16317.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10250895..10251501 | 25..632 | 98 | | Plus |
BO16317.complete Sequence
646 bp assembled on 2006-10-11
GenBank Submission: FJ633781
> BO16317.complete
GAAGTTATCAGTCGACATGAGGACGTCATCACCAGCACTTAAATACCTAT
TGGAGAAGGATGTTCAGGTGTCGAAGCATTTCGTAGTAGCCGTCTCCAAT
CTGTCGTTCTTCAAATCCCTGCGGATCCACAGCAGATTTCTGGAGATATC
ATGCGATGGAATCGCCTGGTTTGTCTCATGGATCGCCTTCATCTGGTTGC
TCAGCTCAAAGAGCTTGTATCAAATGCAAGTCAATATGCTCTTCGGCCTG
ATACTCGACGTGGTGATCGTGGCCGTGCTGAAGGCGCTGGTTCGTCGCAG
GCGACCCGTGGCCAGCAAGGATATGCTGACCATTGGACCCGATAAGTTCA
GCTTTCCCTCAGGTCATGCCTCCCGGGCGTTCTTTGTGCTCCTGTTCTTC
GCCAAGCTGTACCCGCTCCACATCATATTCCTAATGCCGGTCACAGCTTG
GGCTGTAAGCGTGGCCATCTCACGGCTCATCCTCCAGCGTCATTATATTT
TGGATATCTGCGCCGGTGCTGCCATCGGAGTGTTGGAGGCACTAATCGTG
GGACTTCTGTGGATCAGCGAGGAAACTGCATTTAGCATTGTGGGCTTTGT
TACCGAGGAAACTGTCGACAGCATGGAGGCAAGCTTTCTAGACCAT
BO16317.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31717-RB | 615 | CG31717-PB | 1..612 | 17..628 | 2940 | 98.7 | Plus |
| CG31717-RA | 615 | CG31717-PA | 1..612 | 17..628 | 2940 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31717-RB | 854 | CG31717-RB | 23..638 | 13..628 | 2945 | 98.5 | Plus |
| CG31717-RA | 790 | CG31717-RA | 79..694 | 13..628 | 2945 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10250895..10251498 | 25..628 | 2900 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:35:09 has no hits.
BO16317.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:49 Download gff for
BO16317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-RA | 1..615 | 17..632 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:21 Download gff for
BO16317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-RA | 76..697 | 9..632 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:12 Download gff for
BO16317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-RA | 83..694 | 17..630 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:50 Download gff for
BO16317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-RA | 76..697 | 9..632 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:56 Download gff for
BO16317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31717-RA | 83..694 | 17..630 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:56 Download gff for
BO16317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10250895..10251498 | 25..630 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:12 Download gff for
BO16317.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10250895..10251498 | 25..630 | 98 | | Plus |
BO16317.pep Sequence
Translation from 16 to 646
> BO16317.pep
MRTSSPALKYLLEKDVQVSKHFVVAVSNLSFFKSLRIHSRFLEISCDGIA
WFVSWIAFIWLLSSKSLYQMQVNMLFGLILDVVIVAVLKALVRRRRPVAS
KDMLTIGPDKFSFPSGHASRAFFVLLFFAKLYPLHIIFLMPVTAWAVSVA
ISRLILQRHYILDICAGAAIGVLEALIVGLLWISEETAFSIVGFVTEETV
DSMEASFLDH
BO16317.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31717-PB | 204 | CG31717-PB | 1..204 | 1..204 | 1020 | 100 | Plus |
| CG31717-PA | 204 | CG31717-PA | 1..204 | 1..204 | 1020 | 100 | Plus |
