Clone Sequence Records
BO16320.3prime Sequence
707 bp (584 high quality bases) assembled on 2006-10-13
> BO16320.3prime
ATGGTCTAGAAAGCTTGCATTTCCTTGCTGTCCTGGCATTGGATTTTCTT
CCTGATTTTGCTCATTACCCTGATCCGCATCCTTTTCTCTGTTCTTATCC
TGCGCCTTGGTCATTGCAAACAGCTTGGTCCAGTGTCTAGCAATTTTGTC
GTGCTCCCTGCGATTGGTTTTGTACTGATCGGCAATGCACATGACTAGCG
GATCATCTGGATTGCACTCACTCATCAGCACGTAAATGGAAAGTAGAACC
TTGGCCACATTCATCACTGGGGACCATCGTTCGCCGAGGACATCCAGGCA
AATGGCGCCGCGACTGTCCACGTTGCAGTGGTATATTCGGGTGGTGAACC
GAATGCGTGGCGCCCGGAATGGATAGCTGGCCGGAAATCGTATATCCAGC
CGGAAGTGACCGCCTTCGTATACGGAGCCAACTGGCCCGTTCACACCTGC
CGTCCAGTGAAGAAGATCCCCGTGATGCAAATCGGCGGTGCAATTCGGTG
GCGGATTTTTCCGAATGTCCTGCAGTTCGCTCTTAATTCGCACCACACAA
CCAGTAAGTGGTGCCTCGGTGGATTTTCCCGATGCACTGTGACTGGTGCT
GGGTGCCGTCTCTTCTACGGAGCTGGCCACACTGGCTCTCGAGAGCACTT
CTGGTTCAACCCCACTTCCACCTCCGCTCGCGCTCGCGCTTTCCGTTTCA
TTTCCGT
BO16320.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2574-PA | 720 | CG2574-RA | 79..717 | 657..19 | 3145 | 99.6 | Minus |
CG2574-PA | 720 | CG2574-RA | 44..73 | 691..662 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2574-RA | 896 | CG2574-RA | 122..811 | 707..19 | 3335 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12408982..12409442 | 707..248 | 2180 | 98.7 | Minus |
X | 23542271 | X | 12409508..12409740 | 251..19 | 1135 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:51:24 has no hits.
BO16320.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:47 Download gff for
BO16320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-PA | 28..720 | 15..707 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:00 Download gff for
BO16320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-RA | 122..814 | 15..707 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:38 Download gff for
BO16320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-RA | 122..814 | 15..707 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:38 Download gff for
BO16320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12408982..12409440 | 250..707 | 99 | -> | Minus |
X | 12409510..12409743 | 15..249 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:00 Download gff for
BO16320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12303015..12303473 | 250..707 | 99 | -> | Minus |
arm_X | 12303543..12303776 | 15..249 | 98 | | Minus |
BO16320.5prime Sequence
749 bp (675 high quality bases) assembled on 2006-10-13
> BO16320.5prime
GAAGTTATCAGTCGACATGTCCAGCGATCAGGTGAATTCCCAAACGGAAA
TGGAAACGGAAGCGCGAGCGCGAGCGGAGGTGGAAGTGGAGGTCGAACCA
GAAGTGCTCTCGAGAGCCAGTGTGGCCAGCTCCGTAGAAGAGACGGCACC
CAGCACCAGTCACAGTGCATCGGGAAAATCCACCGAGGCACCACTTACTG
GTTGTGTGGTGCGAATTAAGAGCGAACTGCAGGACATTCGGAAAAATCCG
CCACCGAATTGCACCGCCGATTTGCATCACGGGGATCTTCTTCACTGGAC
GGCAGGTGTGAACGGGCCAGTTGGCTCCGTATACGAAGGCGGTCACTTCC
GGCTGGATATACGATTTCCGGCCAGCTATCCATTCCGGGCGCCACGCATT
CGGTTCACCACCCGAATATACCACTGCAACGTGGACAGTCGCGGCGCCAT
TTGCCTGGATGTCCTCGGCGAACGATGGTCCCCAGTGATGAATGTGGCCA
AGGTTCTACTTTCCATTTACGTGCTGATGAGTGAGTGCAATCCAGATGAT
CCGCTAGTCATGTGCATTGCCGATCAGTACAAAACCAATCGCAGGGAGCA
CGACAAAATTGCTAGACACTGGACCAAGCTGTTTGCAATGACCAAGGCGC
AGGATAAGAACAGAGAAAAGGATGCGGATCCAGGTAATGAGCAAAATCAG
GAAGAAAATCCCATGCCAGGACAGCAAGGAAATGGCAGCTTTCTAGACC
BO16320.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2574-PA | 720 | CG2574-RA | 1..717 | 17..733 | 3460 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2574-RA | 896 | CG2574-RA | 95..811 | 17..733 | 3510 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12408955..12409442 | 17..504 | 2440 | 100 | Plus |
X | 23542271 | X | 12409508..12409740 | 501..733 | 1090 | 97.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:51:54 has no hits.
BO16320.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:48 Download gff for
BO16320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-PA | 1..720 | 17..737 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:05 Download gff for
BO16320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-RA | 86..817 | 7..738 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:53 Download gff for
BO16320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-RA | 86..817 | 7..738 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:53 Download gff for
BO16320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12408946..12409440 | 7..502 | 99 | -> | Plus |
X | 12409510..12409746 | 503..738 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:05 Download gff for
BO16320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12302979..12303473 | 7..502 | 99 | -> | Plus |
arm_X | 12303543..12303779 | 503..738 | 96 | | Plus |
BO16320.complete Sequence
751 bp assembled on 2006-10-11
GenBank Submission: FJ633782
> BO16320.complete
GAAGTTATCAGTCGACATGTCCAGCGATCAGGTGAATTCCCAAACGGAAA
TGGAAACGGAAGCGCGAGCGCGAGCGGAGGTGGAAGTGGAGGTCGAACCA
GAAGTGCTCTCGAGAGCCAGTGTGGCCAGCTCCGTAGAAGAGACGGCACC
CAGCACCAGTCACAGTGCATCGGGAAAATCCACCGAGGCACCACTTACTG
GTTGTGTGGTGCGAATTAAGAGCGAACTGCAGGACATTCGGAAAAATCCG
CCACCGAATTGCACCGCCGATTTGCATCACGGGGATCTTCTTCACTGGAC
GGCAGGTGTGAACGGGCCAGTTGGCTCCGTATACGAAGGCGGTCACTTCC
GGCTGGATATACGATTTCCGGCCAGCTATCCATTCCGGGCGCCACGCATT
CGGTTCACCACCCGAATATACCACTGCAACGTGGACAGTCGCGGCGCCAT
TTGCCTGGATGTCCTCGGCGAACGATGGTCCCCAGTGATGAATGTGGCCA
AGGTTCTACTTTCCATTTACGTGCTGATGAGTGAGTGCAATCCAGATGAT
CCGCTAGTCATGTGCATTGCCGATCAGTACAAAACCAATCGCAGGGAGCA
CGACAAAATTGCTAGACACTGGACCAAGCTGTTTGCAATGACCAAGGCGC
AGGATAAGAACAGAGAAAAGGATGCGGATCAGGGTAATGAGCAAAATCAG
GAAGAAAATCCAATGCCAGGACAGCAAGGAAATGCAAGCTTTCTAGACCA
T
BO16320.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:09:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2574-RA | 720 | CG2574-PA | 1..717 | 17..733 | 3555 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:09:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2574-RA | 896 | CG2574-RA | 95..811 | 17..733 | 3555 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12408955..12409442 | 17..504 | 2440 | 100 | Plus |
X | 23542271 | X | 12409508..12409740 | 501..733 | 1135 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:09:16 has no hits.
BO16320.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:54 Download gff for
BO16320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-RA | 1..720 | 17..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:22 Download gff for
BO16320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-RA | 58..786 | 7..737 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:04 Download gff for
BO16320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-RA | 95..811 | 17..735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:55 Download gff for
BO16320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-RA | 58..786 | 7..737 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:21 Download gff for
BO16320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2574-RA | 95..811 | 17..735 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:21 Download gff for
BO16320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12408955..12409440 | 17..502 | 100 | -> | Plus |
X | 12409510..12409740 | 503..735 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:04 Download gff for
BO16320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12302988..12303473 | 17..502 | 100 | -> | Plus |
arm_X | 12303543..12303773 | 503..735 | 98 | | Plus |
BO16320.pep Sequence
Translation from 16 to 751
> BO16320.pep
MSSDQVNSQTEMETEARARAEVEVEVEPEVLSRASVASSVEETAPSTSHS
ASGKSTEAPLTGCVVRIKSELQDIRKNPPPNCTADLHHGDLLHWTAGVNG
PVGSVYEGGHFRLDIRFPASYPFRAPRIRFTTRIYHCNVDSRGAICLDVL
GERWSPVMNVAKVLLSIYVLMSECNPDDPLVMCIADQYKTNRREHDKIAR
HWTKLFAMTKAQDKNREKDADQGNEQNQEENPMPGQQGNASFLDH
BO16320.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2574-PA | 239 | CG2574-PA | 1..239 | 1..239 | 1266 | 100 | Plus |
Ubc2-PD | 232 | CG6720-PD | 90..231 | 66..207 | 441 | 55.6 | Plus |
Ubc2-PC | 232 | CG6720-PC | 90..231 | 66..207 | 441 | 55.6 | Plus |
Ubc2-PB | 232 | CG6720-PB | 90..231 | 66..207 | 441 | 55.6 | Plus |
Ubc2-PA | 232 | CG6720-PA | 90..231 | 66..207 | 441 | 55.6 | Plus |