Clone BO16320 Report

Search the DGRC for BO16320

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG2574-RA
Protein status:BO16320.pep: validated full length
Sequenced Size:751

Clone Sequence Records

BO16320.3prime Sequence

707 bp (584 high quality bases) assembled on 2006-10-13

> BO16320.3prime
ATGGTCTAGAAAGCTTGCATTTCCTTGCTGTCCTGGCATTGGATTTTCTT
CCTGATTTTGCTCATTACCCTGATCCGCATCCTTTTCTCTGTTCTTATCC
TGCGCCTTGGTCATTGCAAACAGCTTGGTCCAGTGTCTAGCAATTTTGTC
GTGCTCCCTGCGATTGGTTTTGTACTGATCGGCAATGCACATGACTAGCG
GATCATCTGGATTGCACTCACTCATCAGCACGTAAATGGAAAGTAGAACC
TTGGCCACATTCATCACTGGGGACCATCGTTCGCCGAGGACATCCAGGCA
AATGGCGCCGCGACTGTCCACGTTGCAGTGGTATATTCGGGTGGTGAACC
GAATGCGTGGCGCCCGGAATGGATAGCTGGCCGGAAATCGTATATCCAGC
CGGAAGTGACCGCCTTCGTATACGGAGCCAACTGGCCCGTTCACACCTGC
CGTCCAGTGAAGAAGATCCCCGTGATGCAAATCGGCGGTGCAATTCGGTG
GCGGATTTTTCCGAATGTCCTGCAGTTCGCTCTTAATTCGCACCACACAA
CCAGTAAGTGGTGCCTCGGTGGATTTTCCCGATGCACTGTGACTGGTGCT
GGGTGCCGTCTCTTCTACGGAGCTGGCCACACTGGCTCTCGAGAGCACTT
CTGGTTCAACCCCACTTCCACCTCCGCTCGCGCTCGCGCTTTCCGTTTCA
TTTCCGT

BO16320.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG2574-PA 720 CG2574-RA 79..717 657..19 3145 99.6 Minus
CG2574-PA 720 CG2574-RA 44..73 691..662 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG2574-RA 896 CG2574-RA 122..811 707..19 3335 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12408982..12409442 707..248 2180 98.7 Minus
X 23542271 X 12409508..12409740 251..19 1135 99.1 Minus
Blast to na_te.dros performed on 2015-02-10 20:51:24 has no hits.

BO16320.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:47 Download gff for BO16320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2574-PA 28..720 15..707 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:00 Download gff for BO16320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 122..814 15..707 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:38 Download gff for BO16320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 122..814 15..707 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:38 Download gff for BO16320.3prime
Subject Subject Range Query Range Percent Splice Strand
X 12408982..12409440 250..707 99 -> Minus
X 12409510..12409743 15..249 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:00 Download gff for BO16320.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12303015..12303473 250..707 99 -> Minus
arm_X 12303543..12303776 15..249 98   Minus

BO16320.5prime Sequence

749 bp (675 high quality bases) assembled on 2006-10-13

> BO16320.5prime
GAAGTTATCAGTCGACATGTCCAGCGATCAGGTGAATTCCCAAACGGAAA
TGGAAACGGAAGCGCGAGCGCGAGCGGAGGTGGAAGTGGAGGTCGAACCA
GAAGTGCTCTCGAGAGCCAGTGTGGCCAGCTCCGTAGAAGAGACGGCACC
CAGCACCAGTCACAGTGCATCGGGAAAATCCACCGAGGCACCACTTACTG
GTTGTGTGGTGCGAATTAAGAGCGAACTGCAGGACATTCGGAAAAATCCG
CCACCGAATTGCACCGCCGATTTGCATCACGGGGATCTTCTTCACTGGAC
GGCAGGTGTGAACGGGCCAGTTGGCTCCGTATACGAAGGCGGTCACTTCC
GGCTGGATATACGATTTCCGGCCAGCTATCCATTCCGGGCGCCACGCATT
CGGTTCACCACCCGAATATACCACTGCAACGTGGACAGTCGCGGCGCCAT
TTGCCTGGATGTCCTCGGCGAACGATGGTCCCCAGTGATGAATGTGGCCA
AGGTTCTACTTTCCATTTACGTGCTGATGAGTGAGTGCAATCCAGATGAT
CCGCTAGTCATGTGCATTGCCGATCAGTACAAAACCAATCGCAGGGAGCA
CGACAAAATTGCTAGACACTGGACCAAGCTGTTTGCAATGACCAAGGCGC
AGGATAAGAACAGAGAAAAGGATGCGGATCCAGGTAATGAGCAAAATCAG
GAAGAAAATCCCATGCCAGGACAGCAAGGAAATGGCAGCTTTCTAGACC

BO16320.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG2574-PA 720 CG2574-RA 1..717 17..733 3460 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2574-RA 896 CG2574-RA 95..811 17..733 3510 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12408955..12409442 17..504 2440 100 Plus
X 23542271 X 12409508..12409740 501..733 1090 97.9 Plus
Blast to na_te.dros performed on 2015-02-10 20:51:54 has no hits.

BO16320.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:48 Download gff for BO16320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2574-PA 1..720 17..737 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:05 Download gff for BO16320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 86..817 7..738 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:30:53 Download gff for BO16320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 86..817 7..738 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:53 Download gff for BO16320.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12408946..12409440 7..502 99 -> Plus
X 12409510..12409746 503..738 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:05 Download gff for BO16320.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12302979..12303473 7..502 99 -> Plus
arm_X 12303543..12303779 503..738 96   Plus

BO16320.complete Sequence

751 bp assembled on 2006-10-11

GenBank Submission: FJ633782

> BO16320.complete
GAAGTTATCAGTCGACATGTCCAGCGATCAGGTGAATTCCCAAACGGAAA
TGGAAACGGAAGCGCGAGCGCGAGCGGAGGTGGAAGTGGAGGTCGAACCA
GAAGTGCTCTCGAGAGCCAGTGTGGCCAGCTCCGTAGAAGAGACGGCACC
CAGCACCAGTCACAGTGCATCGGGAAAATCCACCGAGGCACCACTTACTG
GTTGTGTGGTGCGAATTAAGAGCGAACTGCAGGACATTCGGAAAAATCCG
CCACCGAATTGCACCGCCGATTTGCATCACGGGGATCTTCTTCACTGGAC
GGCAGGTGTGAACGGGCCAGTTGGCTCCGTATACGAAGGCGGTCACTTCC
GGCTGGATATACGATTTCCGGCCAGCTATCCATTCCGGGCGCCACGCATT
CGGTTCACCACCCGAATATACCACTGCAACGTGGACAGTCGCGGCGCCAT
TTGCCTGGATGTCCTCGGCGAACGATGGTCCCCAGTGATGAATGTGGCCA
AGGTTCTACTTTCCATTTACGTGCTGATGAGTGAGTGCAATCCAGATGAT
CCGCTAGTCATGTGCATTGCCGATCAGTACAAAACCAATCGCAGGGAGCA
CGACAAAATTGCTAGACACTGGACCAAGCTGTTTGCAATGACCAAGGCGC
AGGATAAGAACAGAGAAAAGGATGCGGATCAGGGTAATGAGCAAAATCAG
GAAGAAAATCCAATGCCAGGACAGCAAGGAAATGCAAGCTTTCTAGACCA
T

BO16320.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG2574-RA 720 CG2574-PA 1..717 17..733 3555 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG2574-RA 896 CG2574-RA 95..811 17..733 3555 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12408955..12409442 17..504 2440 100 Plus
X 23542271 X 12409508..12409740 501..733 1135 99.1 Plus
Blast to na_te.dros performed on 2014-11-27 07:09:16 has no hits.

BO16320.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:54 Download gff for BO16320.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 1..720 17..737 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:22 Download gff for BO16320.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 58..786 7..737 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:04 Download gff for BO16320.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 95..811 17..735 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:55 Download gff for BO16320.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 58..786 7..737 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:21 Download gff for BO16320.complete
Subject Subject Range Query Range Percent Splice Strand
CG2574-RA 95..811 17..735 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:21 Download gff for BO16320.complete
Subject Subject Range Query Range Percent Splice Strand
X 12408955..12409440 17..502 100 -> Plus
X 12409510..12409740 503..735 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:04 Download gff for BO16320.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12302988..12303473 17..502 100 -> Plus
arm_X 12303543..12303773 503..735 98   Plus

BO16320.pep Sequence

Translation from 16 to 751

> BO16320.pep
MSSDQVNSQTEMETEARARAEVEVEVEPEVLSRASVASSVEETAPSTSHS
ASGKSTEAPLTGCVVRIKSELQDIRKNPPPNCTADLHHGDLLHWTAGVNG
PVGSVYEGGHFRLDIRFPASYPFRAPRIRFTTRIYHCNVDSRGAICLDVL
GERWSPVMNVAKVLLSIYVLMSECNPDDPLVMCIADQYKTNRREHDKIAR
HWTKLFAMTKAQDKNREKDADQGNEQNQEENPMPGQQGNASFLDH

BO16320.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG2574-PA 239 CG2574-PA 1..239 1..239 1266 100 Plus
Ubc2-PD 232 CG6720-PD 90..231 66..207 441 55.6 Plus
Ubc2-PC 232 CG6720-PC 90..231 66..207 441 55.6 Plus
Ubc2-PB 232 CG6720-PB 90..231 66..207 441 55.6 Plus
Ubc2-PA 232 CG6720-PA 90..231 66..207 441 55.6 Plus