Clone BO16322 Report

Search the DGRC for BO16322

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG31093-RA
Protein status:BO16322.pep: validated full length
Sequenced Size:469

Clone Sequence Records

BO16322.3prime Sequence

467 bp (467 high quality bases) assembled on 2006-10-13

> BO16322.3prime
ATGGTCTAGAAAGCTTGCCTCAGTTGGCCCGAACCCTTCCAGTTCGCCGG
CTGCCAGTGTCACAGTTCGGGGCTTAGGCACCTCCGGTCCGGATTCAAGT
TCCGGCTTCGATTCCGGCTCCGACCCTGGTGGTCTGCTGCAACTGTTTGC
AGTGCGACGAATGGCGCACTCATAGACGTAGTTGGCCAGAAACACCGCAG
GAGGAGCAGCTAAGGTTGCTTCAACCTCCGGACCTGGTGCTCCCATTGTA
GCTACTGGAATGTCGACTGCAGACGTTGCTCGTTTTCCCATTGATGTTCC
ATTTCTAGCCAGAGATAACGGTCGATTGCAACTGTTTGTGCTGGTGGGTG
GCTTCTGCTGCCACATGTGGCCTGTACCCCGCAGACAGTTGGCCTCGATC
ACTATAGCGAAAGAGATGCCAAGCAGGGAGCACATAAGAAATATGCAGTT
CATGTCGACTGATAACT

BO16322.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31093-PA 438 CG31093-RA 1..435 453..19 2175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31093-RA 585 CG31093-RA 17..451 453..19 2175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25789953..25790342 19..408 1950 100 Plus
3R 32079331 3R 25790410..25790455 408..453 230 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:08:23 has no hits.

BO16322.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:50 Download gff for BO16322.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31093-PA 1..438 16..453 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:12 Download gff for BO16322.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..457 14..453 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:39 Download gff for BO16322.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..457 14..453 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:39 Download gff for BO16322.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25789947..25790341 14..407 99 <- Plus
3R 25790410..25790455 408..453 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:12 Download gff for BO16322.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21615669..21616063 14..407 99 <- Plus
arm_3R 21616132..21616177 408..453 100   Plus

BO16322.5prime Sequence

467 bp (467 high quality bases) assembled on 2006-10-13

> BO16322.5prime
GAAGTTATCAGTCGACATGAACTGCATATTTCTTATGTGCTCCCTGCTTG
GCATCTCTTTCGCTATAGTGATCGAGGCCAACTGTCTGCGGGGTACAGGC
CACATGTGGCAGCAGAAGCCACCCACCAGCACAAACAGTTGCAATCGACC
GTTATCTCTGGCTAGAAATGGAACATCAATGGGAAAACGAGCAACGTCTG
CAGTCGACATTCCAGTAGCTACAATGGGAGCACCAGGTCCGGAGGTTGAA
GCAACCTTAGCTGCTCCTCCTGCGGTGTTTCTGGCCAACTACGTCTATGA
GTGCGCCATTCGTCGCACTGCAAACAGTTGCAGCAGACCACCAGGGTCGG
AGCCGGAATCGAAGCCGGAACTTGAATCCGGACCGGAGGTGCCTAAGCCC
CGAACTGTGACACTGGCAGCCGGCGAACTGGAAGGGTTCGGGCCAACTGA
GGCAAGCTTTCTAGACC

BO16322.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31093-PA 438 CG31093-RA 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG31093-RA 585 CG31093-RA 17..451 17..451 2175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25789953..25790342 451..62 1950 100 Minus
3R 32079331 3R 25790410..25790455 62..17 230 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:12:52 has no hits.

BO16322.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:50 Download gff for BO16322.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31093-PA 1..438 17..454 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:14:49 Download gff for BO16322.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..457 17..456 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:20:07 Download gff for BO16322.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..457 17..456 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:20:07 Download gff for BO16322.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25789947..25790341 63..456 99 <- Minus
3R 25790410..25790455 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:14:49 Download gff for BO16322.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21615669..21616063 63..456 99 <- Minus
arm_3R 21616132..21616177 17..62 100   Minus

BO16322.complete Sequence

469 bp assembled on 2006-10-11

GenBank Submission: FJ633783

> BO16322.complete
GAAGTTATCAGTCGACATGAACTGCATATTTCTTATGTGCTCCCTGCTTG
GCATCTCTTTCGCTATAGTGATCGAGGCCAACTGTCTGCGGGGTACAGGC
CACATGTGGCAGCAGAAGCCACCCACCAGCACAAACAGTTGCAATCGACC
GTTATCTCTGGCTAGAAATGGAACATCAATGGGAAAACGAGCAACGTCTG
CAGTCGACATTCCAGTAGCTACAATGGGAGCACCAGGTCCGGAGGTTGAA
GCAACCTTAGCTGCTCCTCCTGCGGTGTTTCTGGCCAACTACGTCTATGA
GTGCGCCATTCGTCGCACTGCAAACAGTTGCAGCAGACCACCAGGGTCGG
AGCCGGAATCGAAGCCGGAACTTGAATCCGGACCGGAGGTGCCTAAGCCC
CGAACTGTGACACTGGCAGCCGGCGAACTGGAAGGGTTCGGGCCAACTGA
GGCAAGCTTTCTAGACCAT

BO16322.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31093-RA 438 CG31093-PA 1..435 17..451 2175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:47:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31093-RA 585 CG31093-RA 17..451 17..451 2175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25789953..25790342 451..62 1950 100 Minus
3R 32079331 3R 25790410..25790455 62..17 230 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:47:57 has no hits.

BO16322.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:11 Download gff for BO16322.complete
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 1..438 17..454 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:27 Download gff for BO16322.complete
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..457 17..456 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:15 Download gff for BO16322.complete
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..451 17..453 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:12 Download gff for BO16322.complete
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..457 17..456 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:29 Download gff for BO16322.complete
Subject Subject Range Query Range Percent Splice Strand
CG31093-RA 17..451 17..453 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:29 Download gff for BO16322.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25789950..25790341 63..453 99 <- Minus
3R 25790410..25790455 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:15 Download gff for BO16322.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21615672..21616063 63..453 99 <- Minus
arm_3R 21616132..21616177 17..62 100   Minus

BO16322.pep Sequence

Translation from 16 to 469

> BO16322.pep
MNCIFLMCSLLGISFAIVIEANCLRGTGHMWQQKPPTSTNSCNRPLSLAR
NGTSMGKRATSAVDIPVATMGAPGPEVEATLAAPPAVFLANYVYECAIRR
TANSCSRPPGSEPESKPELESGPEVPKPRTVTLAAGELEGFGPTEASFLD
H

BO16322.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31093-PA 145 CG31093-PA 1..145 1..145 765 100 Plus