Clone Sequence Records
BO16322.3prime Sequence
467 bp (467 high quality bases) assembled on 2006-10-13
> BO16322.3prime
ATGGTCTAGAAAGCTTGCCTCAGTTGGCCCGAACCCTTCCAGTTCGCCGG
CTGCCAGTGTCACAGTTCGGGGCTTAGGCACCTCCGGTCCGGATTCAAGT
TCCGGCTTCGATTCCGGCTCCGACCCTGGTGGTCTGCTGCAACTGTTTGC
AGTGCGACGAATGGCGCACTCATAGACGTAGTTGGCCAGAAACACCGCAG
GAGGAGCAGCTAAGGTTGCTTCAACCTCCGGACCTGGTGCTCCCATTGTA
GCTACTGGAATGTCGACTGCAGACGTTGCTCGTTTTCCCATTGATGTTCC
ATTTCTAGCCAGAGATAACGGTCGATTGCAACTGTTTGTGCTGGTGGGTG
GCTTCTGCTGCCACATGTGGCCTGTACCCCGCAGACAGTTGGCCTCGATC
ACTATAGCGAAAGAGATGCCAAGCAGGGAGCACATAAGAAATATGCAGTT
CATGTCGACTGATAACT
BO16322.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31093-PA | 438 | CG31093-RA | 1..435 | 453..19 | 2175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:08:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31093-RA | 585 | CG31093-RA | 17..451 | 453..19 | 2175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25789953..25790342 | 19..408 | 1950 | 100 | Plus |
3R | 32079331 | 3R | 25790410..25790455 | 408..453 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:08:23 has no hits.
BO16322.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:50 Download gff for
BO16322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31093-PA | 1..438 | 16..453 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:12 Download gff for
BO16322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31093-RA | 17..457 | 14..453 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:39 Download gff for
BO16322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31093-RA | 17..457 | 14..453 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:39 Download gff for
BO16322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25789947..25790341 | 14..407 | 99 | <- | Plus |
3R | 25790410..25790455 | 408..453 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:12 Download gff for
BO16322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21615669..21616063 | 14..407 | 99 | <- | Plus |
arm_3R | 21616132..21616177 | 408..453 | 100 | | Plus |
BO16322.5prime Sequence
467 bp (467 high quality bases) assembled on 2006-10-13
> BO16322.5prime
GAAGTTATCAGTCGACATGAACTGCATATTTCTTATGTGCTCCCTGCTTG
GCATCTCTTTCGCTATAGTGATCGAGGCCAACTGTCTGCGGGGTACAGGC
CACATGTGGCAGCAGAAGCCACCCACCAGCACAAACAGTTGCAATCGACC
GTTATCTCTGGCTAGAAATGGAACATCAATGGGAAAACGAGCAACGTCTG
CAGTCGACATTCCAGTAGCTACAATGGGAGCACCAGGTCCGGAGGTTGAA
GCAACCTTAGCTGCTCCTCCTGCGGTGTTTCTGGCCAACTACGTCTATGA
GTGCGCCATTCGTCGCACTGCAAACAGTTGCAGCAGACCACCAGGGTCGG
AGCCGGAATCGAAGCCGGAACTTGAATCCGGACCGGAGGTGCCTAAGCCC
CGAACTGTGACACTGGCAGCCGGCGAACTGGAAGGGTTCGGGCCAACTGA
GGCAAGCTTTCTAGACC
BO16322.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31093-PA | 438 | CG31093-RA | 1..435 | 17..451 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31093-RA | 585 | CG31093-RA | 17..451 | 17..451 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25789953..25790342 | 451..62 | 1950 | 100 | Minus |
3R | 32079331 | 3R | 25790410..25790455 | 62..17 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:12:52 has no hits.
BO16322.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:50 Download gff for
BO16322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31093-PA | 1..438 | 17..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:14:49 Download gff for
BO16322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31093-RA | 17..457 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:20:07 Download gff for
BO16322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31093-RA | 17..457 | 17..456 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:20:07 Download gff for
BO16322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25789947..25790341 | 63..456 | 99 | <- | Minus |
3R | 25790410..25790455 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:14:49 Download gff for
BO16322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21615669..21616063 | 63..456 | 99 | <- | Minus |
arm_3R | 21616132..21616177 | 17..62 | 100 | | Minus |
BO16322.complete Sequence
469 bp assembled on 2006-10-11
GenBank Submission: FJ633783
> BO16322.complete
GAAGTTATCAGTCGACATGAACTGCATATTTCTTATGTGCTCCCTGCTTG
GCATCTCTTTCGCTATAGTGATCGAGGCCAACTGTCTGCGGGGTACAGGC
CACATGTGGCAGCAGAAGCCACCCACCAGCACAAACAGTTGCAATCGACC
GTTATCTCTGGCTAGAAATGGAACATCAATGGGAAAACGAGCAACGTCTG
CAGTCGACATTCCAGTAGCTACAATGGGAGCACCAGGTCCGGAGGTTGAA
GCAACCTTAGCTGCTCCTCCTGCGGTGTTTCTGGCCAACTACGTCTATGA
GTGCGCCATTCGTCGCACTGCAAACAGTTGCAGCAGACCACCAGGGTCGG
AGCCGGAATCGAAGCCGGAACTTGAATCCGGACCGGAGGTGCCTAAGCCC
CGAACTGTGACACTGGCAGCCGGCGAACTGGAAGGGTTCGGGCCAACTGA
GGCAAGCTTTCTAGACCAT
BO16322.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31093-RA | 438 | CG31093-PA | 1..435 | 17..451 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:47:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31093-RA | 585 | CG31093-RA | 17..451 | 17..451 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:47:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25789953..25790342 | 451..62 | 1950 | 100 | Minus |
3R | 32079331 | 3R | 25790410..25790455 | 62..17 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:47:57 has no hits.
BO16322.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:11 Download gff for
BO16322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31093-RA | 1..438 | 17..454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:27 Download gff for
BO16322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31093-RA | 17..457 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:38:15 Download gff for
BO16322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31093-RA | 17..451 | 17..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:12 Download gff for
BO16322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31093-RA | 17..457 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:29 Download gff for
BO16322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31093-RA | 17..451 | 17..453 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:29 Download gff for
BO16322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25789950..25790341 | 63..453 | 99 | <- | Minus |
3R | 25790410..25790455 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:38:15 Download gff for
BO16322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21615672..21616063 | 63..453 | 99 | <- | Minus |
arm_3R | 21616132..21616177 | 17..62 | 100 | | Minus |
BO16322.pep Sequence
Translation from 16 to 469
> BO16322.pep
MNCIFLMCSLLGISFAIVIEANCLRGTGHMWQQKPPTSTNSCNRPLSLAR
NGTSMGKRATSAVDIPVATMGAPGPEVEATLAAPPAVFLANYVYECAIRR
TANSCSRPPGSEPESKPELESGPEVPKPRTVTLAAGELEGFGPTEASFLD
H
BO16322.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31093-PA | 145 | CG31093-PA | 1..145 | 1..145 | 765 | 100 | Plus |