Clone BO16323 Report

Search the DGRC for BO16323

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:23
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO16323.pep: validated full length
Sequenced Size:472

Clone Sequence Records

BO16323.5prime Sequence

470 bp (470 high quality bases) assembled on 2006-10-13

> BO16323.5prime
GAAGTTATCAGTCGACATGCAGTTAGCCAAATATTCAATATTTTTGTTCG
TTTTATGCGGAACGCTGATACCGGTAGAAATAGTAGCCAGATCACTGGAA
AAGAAACAGCCGAGAGGATCAGTCGCCAGAACTGTGGAGGGTGAAGCGCC
GGCAGGGGATGCTGCTGCCGCAGGTGCAAAACCGGAACACATTAAGCGTG
ACGGAGGAGGAATCCCTGAAATGCCCATGGACCTGCACATGATGCATGCT
CCATGTGACATGGACACCAGGGGTACACAGAGCTATATATTCGCCTTTCC
CAACCATTGCATATGGGCGTTCAACAATCGGTACATGAGCGAAGGACATT
TCCGCATCTACAAGACCTACCAGTTGGAAGGATTTTTCTTTGGCCAGTAT
TACGAACGACTTAAGCGTTACGAATTCGAGCCACATTCCTACGATTACAA
TATGGCAAGCTTTCTAGACC

BO16323.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG30270-PA 441 CG30270-RA 1..438 17..454 2190 100 Plus
CG30270-PB 393 CG30270-RB 13..390 77..454 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG30270-RC 573 CG30270-RC 43..480 17..454 2190 100 Plus
CG30270-RD 563 CG30270-RD 43..470 17..454 2030 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22784452..22784839 67..454 1940 100 Plus
2R 25286936 2R 22784346..22784396 17..67 255 100 Plus
Blast to na_te.dros performed 2015-02-10 17:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 744..820 360..278 105 61.4 Minus

BO16323.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:52 Download gff for BO16323.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30270-PA 1..441 17..458 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:39:55 Download gff for BO16323.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30270-RC 39..483 9..458 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:10 Download gff for BO16323.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30270-RC 39..483 9..458 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:10 Download gff for BO16323.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22784342..22784396 9..67 93 -> Plus
2R 22784453..22784842 68..458 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:39:55 Download gff for BO16323.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18671847..18671901 9..67 93 -> Plus
arm_2R 18671958..18672347 68..458 99   Plus

BO16323.3prime Sequence

470 bp (470 high quality bases) assembled on 2006-10-13

> BO16323.3prime
ATGGTCTAGAAAGCTTGCCATATTGTAATCGTAGGAATGTGGCTCGAATT
CGTAACGCTTAAGTCGTTCGTAATACTGGCCAAAGAAAAATCCTTCCAAC
TGGTAGGTCTTGTAGATGCGGAAATGTCCTTCGCTCATGTACCGATTGTT
GAACGCCCATATGCAATGGTTGGGAAAGGCGAATATATAGCTCTGTGTAC
CCCTGGTGTCCATGTCACATGGAGCATGCATCATGTGCAGGTCCATGGGC
ATTTCAGGGATTCCTCCTCCGTCACGCTTAATGTGTTCCGGTTTTGCACC
TGCGGCAGCAGCATCCCCTGCCGGCGCTTCACCCTCCACAGTTCTGGCGA
CTGATCCTCTCGGCTGTTTCTTTTCCAGTGATCTGGCTACTATTTCTACC
GGTATCAGCGTTCCGCATAAAACGAACAAAAATATTGAATATTTGGCTAA
CTGCATGTCGACTGATAACT

BO16323.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG30270-PA 441 CG30270-RA 1..438 456..19 2190 100 Minus
CG30270-PB 393 CG30270-RB 13..390 396..19 1890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG30270-RC 573 CG30270-RC 43..480 456..19 2190 100 Minus
CG30270-RD 563 CG30270-RD 43..470 456..19 2030 97.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22784452..22784839 406..19 1940 100 Minus
2R 25286936 2R 22784346..22784396 456..406 255 100 Minus
Blast to na_te.dros performed 2015-02-12 17:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 744..820 113..195 105 61.4 Plus

BO16323.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:52 Download gff for BO16323.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30270-PA 1..441 15..456 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:00 Download gff for BO16323.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30270-RC 39..483 15..464 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:11 Download gff for BO16323.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30270-RC 39..483 15..464 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:11 Download gff for BO16323.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22784342..22784396 406..464 93 -> Minus
2R 22784453..22784842 15..405 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:00 Download gff for BO16323.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18671847..18671901 406..464 93 -> Minus
arm_2R 18671958..18672347 15..405 99   Minus

BO16323.complete Sequence

472 bp assembled on 2006-10-11

GenBank Submission: FJ633784

> BO16323.complete
GAAGTTATCAGTCGACATGCAGTTAGCCAAATATTCAATATTTTTGTTCG
TTTTATGCGGAACGCTGATACCGGTAGAAATAGTAGCCAGATCACTGGAA
AAGAAACAGCCGAGAGGATCAGTCGCCAGAACTGTGGAGGGTGAAGCGCC
GGCAGGGGATGCTGCTGCCGCAGGTGCAAAACCGGAACACATTAAGCGTG
ACGGAGGAGGAATCCCTGAAATGCCCATGGACCTGCACATGATGCATGCT
CCATGTGACATGGACACCAGGGGTACACAGAGCTATATATTCGCCTTTCC
CAACCATTGCATATGGGCGTTCAACAATCGGTACATGAGCGAAGGACATT
TCCGCATCTACAAGACCTACCAGTTGGAAGGATTTTTCTTTGGCCAGTAT
TACGAACGACTTAAGCGTTACGAATTCGAGCCACATTCCTACGATTACAA
TATGGCAAGCTTTCTAGACCAT

BO16323.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG30270-RD 237 CG30270-PD 1..234 221..454 1170 100 Plus
CG30270-RC 237 CG30270-PC 1..234 221..454 1170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG30270-RC 573 CG30270-RC 43..480 17..454 2190 100 Plus
CG30270-RD 563 CG30270-RD 43..470 17..454 2005 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22784452..22784839 67..454 1940 100 Plus
2R 25286936 2R 22784346..22784396 17..67 255 100 Plus
Blast to na_te.dros performed 2014-11-27 14:23:48
Subject Length Description Subject Range Query Range Score Percent Strand
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 744..820 360..278 105 61.4 Minus

BO16323.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:34 Download gff for BO16323.complete
Subject Subject Range Query Range Percent Splice Strand
CG30270-RA 1..441 17..458 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:50 Download gff for BO16323.complete
Subject Subject Range Query Range Percent Splice Strand
CG30270-RC 39..483 9..458 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:52 Download gff for BO16323.complete
Subject Subject Range Query Range Percent Splice Strand
CG30270-RC 43..480 17..456 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:35 Download gff for BO16323.complete
Subject Subject Range Query Range Percent Splice Strand
CG30270-RA 44..488 9..458 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:31 Download gff for BO16323.complete
Subject Subject Range Query Range Percent Splice Strand
CG30270-RC 43..480 17..456 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:31 Download gff for BO16323.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22784453..22784839 68..456 99   Plus
2R 22784346..22784396 17..67 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:52 Download gff for BO16323.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18671958..18672344 68..456 99   Plus
arm_2R 18671851..18671901 17..67 100 -> Plus

BO16323.pep Sequence

Translation from 16 to 472

> BO16323.pep
MQLAKYSIFLFVLCGTLIPVEIVARSLEKKQPRGSVARTVEGEAPAGDAA
AAGAKPEHIKRDGGGIPEMPMDLHMMHAPCDMDTRGTQSYIFAFPNHCIW
AFNNRYMSEGHFRIYKTYQLEGFFFGQYYERLKRYEFEPHSYDYNMASFL
DH

BO16323.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG30270-PD 78 CG30270-PD 1..78 69..146 453 100 Plus
CG30270-PC 78 CG30270-PC 1..78 69..146 453 100 Plus
CG34234-PA 116 CG34234-PA 46..116 67..138 178 44.4 Plus