Clone Sequence Records
BO16323.5prime Sequence
470 bp (470 high quality bases) assembled on 2006-10-13
> BO16323.5prime
GAAGTTATCAGTCGACATGCAGTTAGCCAAATATTCAATATTTTTGTTCG
TTTTATGCGGAACGCTGATACCGGTAGAAATAGTAGCCAGATCACTGGAA
AAGAAACAGCCGAGAGGATCAGTCGCCAGAACTGTGGAGGGTGAAGCGCC
GGCAGGGGATGCTGCTGCCGCAGGTGCAAAACCGGAACACATTAAGCGTG
ACGGAGGAGGAATCCCTGAAATGCCCATGGACCTGCACATGATGCATGCT
CCATGTGACATGGACACCAGGGGTACACAGAGCTATATATTCGCCTTTCC
CAACCATTGCATATGGGCGTTCAACAATCGGTACATGAGCGAAGGACATT
TCCGCATCTACAAGACCTACCAGTTGGAAGGATTTTTCTTTGGCCAGTAT
TACGAACGACTTAAGCGTTACGAATTCGAGCCACATTCCTACGATTACAA
TATGGCAAGCTTTCTAGACC
BO16323.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30270-PA | 441 | CG30270-RA | 1..438 | 17..454 | 2190 | 100 | Plus |
CG30270-PB | 393 | CG30270-RB | 13..390 | 77..454 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30270-RC | 573 | CG30270-RC | 43..480 | 17..454 | 2190 | 100 | Plus |
CG30270-RD | 563 | CG30270-RD | 43..470 | 17..454 | 2030 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22784452..22784839 | 67..454 | 1940 | 100 | Plus |
2R | 25286936 | 2R | 22784346..22784396 | 17..67 | 255 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 17:11:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 744..820 | 360..278 | 105 | 61.4 | Minus |
BO16323.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:52 Download gff for
BO16323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-PA | 1..441 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:39:55 Download gff for
BO16323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-RC | 39..483 | 9..458 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:10 Download gff for
BO16323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-RC | 39..483 | 9..458 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:10 Download gff for
BO16323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22784342..22784396 | 9..67 | 93 | -> | Plus |
2R | 22784453..22784842 | 68..458 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:39:55 Download gff for
BO16323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18671847..18671901 | 9..67 | 93 | -> | Plus |
arm_2R | 18671958..18672347 | 68..458 | 99 | | Plus |
BO16323.3prime Sequence
470 bp (470 high quality bases) assembled on 2006-10-13
> BO16323.3prime
ATGGTCTAGAAAGCTTGCCATATTGTAATCGTAGGAATGTGGCTCGAATT
CGTAACGCTTAAGTCGTTCGTAATACTGGCCAAAGAAAAATCCTTCCAAC
TGGTAGGTCTTGTAGATGCGGAAATGTCCTTCGCTCATGTACCGATTGTT
GAACGCCCATATGCAATGGTTGGGAAAGGCGAATATATAGCTCTGTGTAC
CCCTGGTGTCCATGTCACATGGAGCATGCATCATGTGCAGGTCCATGGGC
ATTTCAGGGATTCCTCCTCCGTCACGCTTAATGTGTTCCGGTTTTGCACC
TGCGGCAGCAGCATCCCCTGCCGGCGCTTCACCCTCCACAGTTCTGGCGA
CTGATCCTCTCGGCTGTTTCTTTTCCAGTGATCTGGCTACTATTTCTACC
GGTATCAGCGTTCCGCATAAAACGAACAAAAATATTGAATATTTGGCTAA
CTGCATGTCGACTGATAACT
BO16323.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30270-PA | 441 | CG30270-RA | 1..438 | 456..19 | 2190 | 100 | Minus |
CG30270-PB | 393 | CG30270-RB | 13..390 | 396..19 | 1890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:37:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30270-RC | 573 | CG30270-RC | 43..480 | 456..19 | 2190 | 100 | Minus |
CG30270-RD | 563 | CG30270-RD | 43..470 | 456..19 | 2030 | 97.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22784452..22784839 | 406..19 | 1940 | 100 | Minus |
2R | 25286936 | 2R | 22784346..22784396 | 456..406 | 255 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 17:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 744..820 | 113..195 | 105 | 61.4 | Plus |
BO16323.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:52 Download gff for
BO16323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-PA | 1..441 | 15..456 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:00 Download gff for
BO16323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-RC | 39..483 | 15..464 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:53:11 Download gff for
BO16323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-RC | 39..483 | 15..464 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:53:11 Download gff for
BO16323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22784342..22784396 | 406..464 | 93 | -> | Minus |
2R | 22784453..22784842 | 15..405 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:00 Download gff for
BO16323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18671847..18671901 | 406..464 | 93 | -> | Minus |
arm_2R | 18671958..18672347 | 15..405 | 99 | | Minus |
BO16323.complete Sequence
472 bp assembled on 2006-10-11
GenBank Submission: FJ633784
> BO16323.complete
GAAGTTATCAGTCGACATGCAGTTAGCCAAATATTCAATATTTTTGTTCG
TTTTATGCGGAACGCTGATACCGGTAGAAATAGTAGCCAGATCACTGGAA
AAGAAACAGCCGAGAGGATCAGTCGCCAGAACTGTGGAGGGTGAAGCGCC
GGCAGGGGATGCTGCTGCCGCAGGTGCAAAACCGGAACACATTAAGCGTG
ACGGAGGAGGAATCCCTGAAATGCCCATGGACCTGCACATGATGCATGCT
CCATGTGACATGGACACCAGGGGTACACAGAGCTATATATTCGCCTTTCC
CAACCATTGCATATGGGCGTTCAACAATCGGTACATGAGCGAAGGACATT
TCCGCATCTACAAGACCTACCAGTTGGAAGGATTTTTCTTTGGCCAGTAT
TACGAACGACTTAAGCGTTACGAATTCGAGCCACATTCCTACGATTACAA
TATGGCAAGCTTTCTAGACCAT
BO16323.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30270-RD | 237 | CG30270-PD | 1..234 | 221..454 | 1170 | 100 | Plus |
CG30270-RC | 237 | CG30270-PC | 1..234 | 221..454 | 1170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30270-RC | 573 | CG30270-RC | 43..480 | 17..454 | 2190 | 100 | Plus |
CG30270-RD | 563 | CG30270-RD | 43..470 | 17..454 | 2005 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22784452..22784839 | 67..454 | 1940 | 100 | Plus |
2R | 25286936 | 2R | 22784346..22784396 | 17..67 | 255 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:23:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 744..820 | 360..278 | 105 | 61.4 | Minus |
BO16323.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:34 Download gff for
BO16323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-RA | 1..441 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:50 Download gff for
BO16323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-RC | 39..483 | 9..458 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:52 Download gff for
BO16323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-RC | 43..480 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:35 Download gff for
BO16323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-RA | 44..488 | 9..458 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:31 Download gff for
BO16323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30270-RC | 43..480 | 17..456 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:31 Download gff for
BO16323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22784453..22784839 | 68..456 | 99 | | Plus |
2R | 22784346..22784396 | 17..67 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:52 Download gff for
BO16323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18671958..18672344 | 68..456 | 99 | | Plus |
arm_2R | 18671851..18671901 | 17..67 | 100 | -> | Plus |
BO16323.pep Sequence
Translation from 16 to 472
> BO16323.pep
MQLAKYSIFLFVLCGTLIPVEIVARSLEKKQPRGSVARTVEGEAPAGDAA
AAGAKPEHIKRDGGGIPEMPMDLHMMHAPCDMDTRGTQSYIFAFPNHCIW
AFNNRYMSEGHFRIYKTYQLEGFFFGQYYERLKRYEFEPHSYDYNMASFL
DH
BO16323.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30270-PD | 78 | CG30270-PD | 1..78 | 69..146 | 453 | 100 | Plus |
CG30270-PC | 78 | CG30270-PC | 1..78 | 69..146 | 453 | 100 | Plus |
CG34234-PA | 116 | CG34234-PA | 46..116 | 67..138 | 178 | 44.4 | Plus |