Clone Sequence Records
BO16326.3prime Sequence
338 bp (338 high quality bases) assembled on 2006-10-13
> BO16326.3prime
ATGGTCTAGAAAGCTTGCTTCCAGTTTAGCAAGGATATCGCTCTCGCGGA
ACAGAACATACTCGCGCTTGTCGTCCATATCGACCTTAGTTCCACCGTAT
TTGGGCAACAGCACGCGATCGCCCTCCTTGACGCCAACGGACAAGTGTCC
AGCTCCAGCAGGATTGCGGGCTCCGGGTCCGACGGCAACCACCACGCCCT
GCATCTCCTTGGGCACCGACTCCTCGGGCAGCAGGATGCCGCCCGCGGTG
GTGGTCTTCACCTCGAAACGCTGGATTAGAATGCGGTCCAGCATGGGAAT
CACCTTCTTAATAACGTTGGACATGTCGACTGATAACT
BO16326.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9920-PA | 309 | CG9920-RA | 1..306 | 324..19 | 1530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:36:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9920-RA | 714 | CG9920-RA | 102..407 | 324..19 | 1530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14097600..14097905 | 19..324 | 1530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:36:18 has no hits.
BO16326.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:56 Download gff for
BO16326.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9920-PA | 1..309 | 18..324 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:20 Download gff for
BO16326.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9920-RA | 102..414 | 10..324 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:40:54 Download gff for
BO16326.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9920-RA | 102..414 | 10..324 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:40:54 Download gff for
BO16326.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14097593..14097905 | 10..324 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:20 Download gff for
BO16326.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9923315..9923627 | 10..324 | 98 | | Plus |
BO16326.5prime Sequence
338 bp (338 high quality bases) assembled on 2006-10-13
> BO16326.5prime
GAAGTTATCAGTCGACATGTCCAACGTTATTAAGAAGGTGATTCCCATGC
TGGACCGCATTCTAATCCAGCGTTTCGAGGTGAAGACCACCACCGCGGGC
GGCATCCTGCTGCCCGAGGAGTCGGTGCCCAAGGAGATGCAGGGCGTGGT
GGTTGCCGTCGGACCCGGAGCCCGCAATCCTGCTGGAGCTGGACACTTGT
CCGTTGGCGTCAAGGAGGGCGATCGCGTGCTGTTGCCCAAATACGGTGGA
ACTAAGGTCGATATGGACGACAAGCGCGAGTATGTTCTGTTCCGCGAGAG
CGATATCCTTGCTAAACTGGAAGCAAGCTTTCTAGACC
BO16326.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9920-PA | 309 | CG9920-RA | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9920-RA | 714 | CG9920-RA | 102..407 | 17..322 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:05:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14097600..14097905 | 322..17 | 1530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:05:08 has no hits.
BO16326.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:57 Download gff for
BO16326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9920-PA | 1..309 | 17..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:27 Download gff for
BO16326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9920-RA | 102..414 | 17..331 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:41 Download gff for
BO16326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9920-RA | 102..414 | 17..331 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:41 Download gff for
BO16326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14097593..14097905 | 17..331 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:27 Download gff for
BO16326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9923315..9923627 | 17..331 | 98 | | Minus |
BO16326.complete Sequence
340 bp assembled on 2006-10-11
GenBank Submission: FJ633785
> BO16326.complete
GAAGTTATCAGTCGACATGTCCAACGTTATTAAGAAGGTGATTCCCATGC
TGGACCGCATTCTAATCCAGCGTTTCGAGGTGAAGACCACCACCGCGGGC
GGCATCCTGCTGCCCGAGGAGTCGGTGCCCAAGGAGATGCAGGGCGTGGT
GGTTGCCGTCGGACCCGGAGCCCGCAATCCTGCTGGAGCTGGACACTTGT
CCGTTGGCGTCAAGGAGGGCGATCGCGTGCTGTTGCCCAAATACGGTGGA
ACTAAGGTCGATATGGACGACAAGCGCGAGTATGTTCTGTTCCGCGAGAG
CGATATCCTTGCTAAACTGGAAGCAAGCTTTCTAGACCAT
BO16326.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:43:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9920-RA | 309 | CG9920-PA | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9920-RA | 714 | CG9920-RA | 102..407 | 17..322 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14097600..14097905 | 322..17 | 1530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:43:46 has no hits.
BO16326.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:37 Download gff for
BO16326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9920-RA | 1..309 | 17..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:32 Download gff for
BO16326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9920-RA | 102..414 | 17..331 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:23 Download gff for
BO16326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9920-RA | 102..407 | 17..324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:38 Download gff for
BO16326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9920-RA | 102..414 | 17..331 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:58 Download gff for
BO16326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9920-RA | 102..407 | 17..324 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:58 Download gff for
BO16326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14097598..14097905 | 17..324 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:23 Download gff for
BO16326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9923320..9923627 | 17..324 | 99 | | Minus |
BO16326.pep Sequence
Translation from 16 to 340
> BO16326.pep
MSNVIKKVIPMLDRILIQRFEVKTTTAGGILLPEESVPKEMQGVVVAVGP
GARNPAGAGHLSVGVKEGDRVLLPKYGGTKVDMDDKREYVLFRESDILAK
LEASFLDH
BO16326.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9920-PA | 102 | CG9920-PA | 1..102 | 1..102 | 511 | 100 | Plus |
CG11267-PA | 103 | CG11267-PA | 1..103 | 1..102 | 333 | 64.1 | Plus |