Clone BO16326 Report

Search the DGRC for BO16326

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptCG9920-RA
Protein status:BO16326.pep: validated full length
Sequenced Size:340

Clone Sequence Records

BO16326.3prime Sequence

338 bp (338 high quality bases) assembled on 2006-10-13

> BO16326.3prime
ATGGTCTAGAAAGCTTGCTTCCAGTTTAGCAAGGATATCGCTCTCGCGGA
ACAGAACATACTCGCGCTTGTCGTCCATATCGACCTTAGTTCCACCGTAT
TTGGGCAACAGCACGCGATCGCCCTCCTTGACGCCAACGGACAAGTGTCC
AGCTCCAGCAGGATTGCGGGCTCCGGGTCCGACGGCAACCACCACGCCCT
GCATCTCCTTGGGCACCGACTCCTCGGGCAGCAGGATGCCGCCCGCGGTG
GTGGTCTTCACCTCGAAACGCTGGATTAGAATGCGGTCCAGCATGGGAAT
CACCTTCTTAATAACGTTGGACATGTCGACTGATAACT

BO16326.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9920-PA 309 CG9920-RA 1..306 324..19 1530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:36:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9920-RA 714 CG9920-RA 102..407 324..19 1530 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14097600..14097905 19..324 1530 100 Plus
Blast to na_te.dros performed on 2015-02-08 11:36:18 has no hits.

BO16326.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:56 Download gff for BO16326.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9920-PA 1..309 18..324 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:20 Download gff for BO16326.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9920-RA 102..414 10..324 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:40:54 Download gff for BO16326.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9920-RA 102..414 10..324 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:40:54 Download gff for BO16326.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14097593..14097905 10..324 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:20 Download gff for BO16326.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9923315..9923627 10..324 98   Plus

BO16326.5prime Sequence

338 bp (338 high quality bases) assembled on 2006-10-13

> BO16326.5prime
GAAGTTATCAGTCGACATGTCCAACGTTATTAAGAAGGTGATTCCCATGC
TGGACCGCATTCTAATCCAGCGTTTCGAGGTGAAGACCACCACCGCGGGC
GGCATCCTGCTGCCCGAGGAGTCGGTGCCCAAGGAGATGCAGGGCGTGGT
GGTTGCCGTCGGACCCGGAGCCCGCAATCCTGCTGGAGCTGGACACTTGT
CCGTTGGCGTCAAGGAGGGCGATCGCGTGCTGTTGCCCAAATACGGTGGA
ACTAAGGTCGATATGGACGACAAGCGCGAGTATGTTCTGTTCCGCGAGAG
CGATATCCTTGCTAAACTGGAAGCAAGCTTTCTAGACC

BO16326.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9920-PA 309 CG9920-RA 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9920-RA 714 CG9920-RA 102..407 17..322 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14097600..14097905 322..17 1530 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:05:08 has no hits.

BO16326.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:57 Download gff for BO16326.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9920-PA 1..309 17..323 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:27 Download gff for BO16326.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9920-RA 102..414 17..331 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:41 Download gff for BO16326.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9920-RA 102..414 17..331 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:41 Download gff for BO16326.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14097593..14097905 17..331 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:27 Download gff for BO16326.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9923315..9923627 17..331 98   Minus

BO16326.complete Sequence

340 bp assembled on 2006-10-11

GenBank Submission: FJ633785

> BO16326.complete
GAAGTTATCAGTCGACATGTCCAACGTTATTAAGAAGGTGATTCCCATGC
TGGACCGCATTCTAATCCAGCGTTTCGAGGTGAAGACCACCACCGCGGGC
GGCATCCTGCTGCCCGAGGAGTCGGTGCCCAAGGAGATGCAGGGCGTGGT
GGTTGCCGTCGGACCCGGAGCCCGCAATCCTGCTGGAGCTGGACACTTGT
CCGTTGGCGTCAAGGAGGGCGATCGCGTGCTGTTGCCCAAATACGGTGGA
ACTAAGGTCGATATGGACGACAAGCGCGAGTATGTTCTGTTCCGCGAGAG
CGATATCCTTGCTAAACTGGAAGCAAGCTTTCTAGACCAT

BO16326.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9920-RA 309 CG9920-PA 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9920-RA 714 CG9920-RA 102..407 17..322 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:43:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14097600..14097905 322..17 1530 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:43:46 has no hits.

BO16326.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:37 Download gff for BO16326.complete
Subject Subject Range Query Range Percent Splice Strand
CG9920-RA 1..309 17..323 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:32 Download gff for BO16326.complete
Subject Subject Range Query Range Percent Splice Strand
CG9920-RA 102..414 17..331 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:23 Download gff for BO16326.complete
Subject Subject Range Query Range Percent Splice Strand
CG9920-RA 102..407 17..324 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:38 Download gff for BO16326.complete
Subject Subject Range Query Range Percent Splice Strand
CG9920-RA 102..414 17..331 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:58 Download gff for BO16326.complete
Subject Subject Range Query Range Percent Splice Strand
CG9920-RA 102..407 17..324 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:58 Download gff for BO16326.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14097598..14097905 17..324 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:23 Download gff for BO16326.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9923320..9923627 17..324 99   Minus

BO16326.pep Sequence

Translation from 16 to 340

> BO16326.pep
MSNVIKKVIPMLDRILIQRFEVKTTTAGGILLPEESVPKEMQGVVVAVGP
GARNPAGAGHLSVGVKEGDRVLLPKYGGTKVDMDDKREYVLFRESDILAK
LEASFLDH

BO16326.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9920-PA 102 CG9920-PA 1..102 1..102 511 100 Plus
CG11267-PA 103 CG11267-PA 1..103 1..102 333 64.1 Plus