Clone Sequence Records
BO16327.3prime Sequence
893 bp (806 high quality bases) assembled on 2006-10-13
> BO16327.3prime
ATGGTCTAGAAAGCTTGCAGGCTTTTCACGTTGCATCGTCTTCCAGATGG
CGTTCATTCGCATGTGCCCTTCTCGCAGATGGTTCAACAAGGCTTCAACG
GTCCCTTCGACTGACTTGCCAGCTCCAGATCTCCTGCAAGAGGCAATGTG
TCGTTCGTAGCGCCATTTGCTCCTAAAGACTCTGTCACAGTGCTCGCACA
CAGCTTGCTCGCCCTGATCGTCCTCGGATCCGGCGTCATCCGCCATGGCC
GCTTGACCGGACTTGTTGGGACTGGCCCACATGGGCTCCGGCTTAATAAG
CAGCTGCGTCTTGTTTTTACGCTGCAGCTCCTCCTGGTGGTTGTAGCGAA
TGTGATTGAGGATCTTTGAGGTGCTGGTCTTGGTGCGATCGCAGAGTGTG
CACTTGAGGTACGACCGGTAGGGCAGATGCTTGAAGCAGTGCTTCTGCAG
TTGTGAGCGCACGGTCGTTGGTTGCACCTCACGGCACTGCAGGCACATGG
CCTTGCGCCCGGACTCCAGGATCTTAAAACTGTTCTCGATTATGTGCTCG
AAGTCGTGCTTCTTGAATACGTGTGCCCGCCAACCGTCCATCGAGGCGAT
TTCCTTGCCGCACTTCGGACACAAGTACGATATGAGCTTCGTGAGGCCGT
TGGTGGACATTTCCGTGTCTGAGTCGCGGCTGGGCGTCGTAGAGATGCGT
CGACGCTTAGTCGGTTGACTTATTGGGTCCGACTTCATTTCCTTCTTCAG
CTGGGCCACTTCCTCCTTGCCGAGTGCATCGATCTCGATGATGACCACCT
CCTGATTTCCTTGCTGCAGGTGCGCATCGTCTTGCTGCTGCTCCTCATTA
GCTTCTCCTTTGCCGGCGGAGGGGCCATCATCAAAAAACTCCT
BO16327.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1024-PA | 1632 | CG1024-RA | 755..1629 | 893..19 | 4375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:30:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1024-RB | 1870 | CG1024-RB | 919..1793 | 893..19 | 4375 | 100 | Minus |
| CG1024-RE | 2506 | CG1024-RE | 798..1672 | 893..19 | 4375 | 100 | Minus |
| CG1024-RD | 2570 | CG1024-RD | 798..1672 | 893..19 | 4375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:30:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6378473..6379347 | 19..893 | 4375 | 100 | Plus |
Blast to na_te.dros performed 2015-02-03 06:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 819..898 | 487..404 | 113 | 63.1 | Minus |
| Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 9336..9415 | 487..404 | 113 | 63.1 | Minus |
BO16327.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:57 Download gff for
BO16327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-PA | 755..1632 | 18..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:12 Download gff for
BO16327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 798..1672 | 19..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:00 Download gff for
BO16327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 798..1672 | 19..893 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:00 Download gff for
BO16327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6378473..6379347 | 19..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:12 Download gff for
BO16327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2204195..2205069 | 19..893 | 100 | | Plus |
BO16327.5prime Sequence
899 bp (787 high quality bases) assembled on 2006-10-13
> BO16327.5prime
GAAGTTATCAGTCGACATGTTAGGGAAAATGTCGCGGAACGTGACGCTCT
CGGATGAACAAAGTCGGCTTAATGCGCGTCTGGAGGCGCACATGGTTTAC
ATATGTCCGGAATGCGGCAAGGCGTTCCGCACTCAGGCGGAGTGGCGACA
GCATCTGAACACGAAACACGACTATCTAAAGAAGACGTACTCAGATTTCA
ACTTCATCCAGATCGACGAGCGATTCCATGAGTGCCAGCTGTGCTTCAAA
TGGGTGGAGAATGCCCACAAGACAATCGCCCTCCTGCAGTACCACTACTT
TATGCATCTGGAGCACAGTGAAACCTACCGCTGCGTGCACTGCCGCATGG
CGTACACGAGGCGCCGGGCTCTGAACGTCCACCTACTGGACACGCACATG
CGGGAGATCGAGAAGTACGAGAACAAGCTGCGCCAGATGAAGCGGCAGCA
GGCGAAACCCACTACAGCGGCCGCACCAGCTGGAAATGCAGAGAAGCCGA
TGGCTGTGAAGCCGCGTGGGCGTCCCAAAGGTTCCACGAACAGAAAGCAA
AATGATCTGCTGCAAAAGGCGCTGATGGACATTGATCTGAACACAGAAAT
GGAAAAGTCCCCAGTGACAGCACTAGCGGCTCCTGTAAACGAACCTAAGC
CCATTTCAAATGTCAGCGAGCTGAATCTAGATCGGTGTTTGAATGCCTAC
GAGGACATCGTGCGCAAGGAGGAGAAAGAGGTGGTGCCGAAGTATGACGA
CGAGTTGGATGCGCTCTGCAAGGAGTTTTTTGATGATGGCCCCTCCGCCG
GCAAAGGAGAAGCTAATGAGGAGCAGCAGCAAGACGATGCGCACCTGCAG
CAAGGAAATCAGGAGGTGGTCATCATCGAGATCGATGCACTCGGCAAGG
BO16327.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1024-PA | 1632 | CG1024-RA | 1..883 | 17..899 | 4415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1024-RB | 1870 | CG1024-RB | 165..1047 | 17..899 | 4415 | 100 | Plus |
| CG1024-RE | 2506 | CG1024-RE | 44..926 | 17..899 | 4415 | 100 | Plus |
| CG1024-RD | 2570 | CG1024-RD | 44..926 | 17..899 | 4415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6379219..6379955 | 899..163 | 3685 | 100 | Minus |
| 3R | 32079331 | 3R | 6380018..6380164 | 163..17 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:37:57 has no hits.
BO16327.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:58 Download gff for
BO16327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:23 Download gff for
BO16327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 44..926 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:41 Download gff for
BO16327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 44..926 | 17..899 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:41 Download gff for
BO16327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6379219..6379954 | 164..899 | 100 | <- | Minus |
| 3R | 6380018..6380164 | 17..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:23 Download gff for
BO16327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2204941..2205676 | 164..899 | 100 | <- | Minus |
| arm_3R | 2205740..2205886 | 17..163 | 100 | | Minus |
BO16327.complete Sequence
1663 bp assembled on 2006-10-11
GenBank Submission: FJ633786
> BO16327.complete
GAAGTTATCAGTCGACATGTTAGGGAAAATGTCGCGGAACGTGACGCTCT
CGGATGAACAAAGTCGGCTTAATGCGCGTCTGGAGGCGCACATGGTTTAC
ATATGTCCGGAATGCGGCAAGGCGTTCCGCACTCAGGCGGAGTGGCGACA
GCATCTGAACACGAAACACGACTATCTAAAGAAGACGTACTCAGATTTCA
ACTTCATCCAGATCGACGAGCGATTCCATGAGTGCCAGCTGTGCTTCAAA
TGGGTGGAGAATGCCCACAAGACAATCGCCCTCCTGCAGTACCACTACTT
TATGCATCTGGAGCACAGTGAAACCTACCGCTGCGTGCACTGCCGCATGG
CGTACACGAGGCGCCGGGCTCTGAACGTCCACCTACTGGACACGCACATG
CGGGAGATCGAGAAGTACGAGAACAAGCTGCGCCAGATGAAGCGGCAGCA
GGCGAAACCCACTACAGCGGCCGCACCAGCTGGAAATGCAGAGAAGCCGA
TGGCTGTGAAGCCGCGTGGGCGTCCCAAAGGTTCCACGAACAGAAAGCAA
AATGATCTGCTGCAAAAGGCGCTGATGGACATTGATCTGAACACAGAAAT
GGAAAAGTCCCCAGTGACAGCACTAGCGGCTCCTGTAAACGAACCTAAGC
CCATTTCAAATGTCAGCGAGCTGAATCTAGATCGGTGTTTGAATGCCTAC
GAGGACATCGTGCGCAAGGAGGAGAAAGAGGTGGTGCCGAAGTATGACGA
CGAGTTGGATGCGCTCTGCAAGGAGTTTTTTGATGATGGCCCCTCCGCCG
GCAAAGGAGAAGCTAATGAGGAGCAGCAGCAAGACGATGCGCACCTGCAG
CAAGGAAATCAGGAGGTGGTCATCATCGAGATCGATGCACTCGGCAAGGA
GGAAGTGGCCCAGCTGAAGAAGGAAATGAAGTCGGACCCAATAAGTCAAC
CGACTAAGCGTCGACGCATCTCTACGACGCCCAGCCGCGACTCAGACACG
GAAATGTCCACCAACGGCCTCACGAAGCTCATATCGTACTTGTGTCCGAA
GTGCGGCAAGGAAATCGCCTCGATGGACGGTTGGCGGGCACACGTATTCA
AGAAGCACGACTTCGAGCACATAATCGAGAACAGTTTTAAGATCCTGGAG
TCCGGGCGCAAGGCCATGTGCCTGCAGTGCCGTGAGGTGCAACCAACGAC
CGTGCGCTCACAACTGCAGAAGCACTGCTTCAAGCATCTGCCCTACCGGT
CGTACCTCAAGTGCACACTCTGCGATCGCACCAAGACCAGCACCTCAAAG
ATCCTCAATCACATTCGCTACAACCACCAGGAGGAGCTGCAGCGTAAAAA
CAAGACGCAGCTGCTTATTAAGCCGGAGCCCATGTGGGCCAGTCCCAACA
AGTCCGGTCAAGCGGCCATGGCGGATGACGCCGGATCCGAGGACGATCAG
GGCGAGCAAGCTGTGTGCGAGCACTGTGACAGAGTCTTTAGGAGCAAATG
GCGCTACGAACGACACATTGCCTCTTGCAGGAGATCTGGAGCTGGCAAGT
CAGTCGAAGGGACCGTTGAAGCCTTGTTGAACCATCTGCGAGAAGGGCAC
ATGCGAATGAACGCCATCTGGAAGACGATGCAACGTGAAAAGCCTGCAAG
CTTTCTAGACCAT
BO16327.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1024-RE | 1632 | CG1024-PE | 1..1629 | 17..1645 | 8145 | 100 | Plus |
| CG1024-RD | 1632 | CG1024-PD | 1..1629 | 17..1645 | 8145 | 100 | Plus |
| CG1024-RB | 1620 | CG1024-PB | 1..1617 | 29..1645 | 8085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1024-RB | 1870 | CG1024-RB | 165..1793 | 17..1645 | 8145 | 100 | Plus |
| CG1024-RE | 2506 | CG1024-RE | 44..1672 | 17..1645 | 8145 | 100 | Plus |
| CG1024-RD | 2570 | CG1024-RD | 44..1672 | 17..1645 | 8145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6378473..6379955 | 1645..163 | 7415 | 100 | Minus |
| 3R | 32079331 | 3R | 6380018..6380164 | 163..17 | 735 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:39:34 has no hits.
BO16327.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:41 Download gff for
BO16327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RC | 1..1620 | 29..1646 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:51 Download gff for
BO16327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RC | 44..1672 | 17..1645 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:26 Download gff for
BO16327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 49..1672 | 22..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:42 Download gff for
BO16327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RC | 44..1672 | 17..1645 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:03 Download gff for
BO16327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1024-RD | 49..1672 | 22..1647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:03 Download gff for
BO16327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6378471..6379954 | 164..1647 | 99 | <- | Minus |
| 3R | 6380018..6380159 | 22..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:26 Download gff for
BO16327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2204193..2205676 | 164..1647 | 99 | <- | Minus |
| arm_3R | 2205740..2205881 | 22..163 | 100 | | Minus |
BO16327.pep Sequence
Translation from 16 to 1663
> BO16327.pep
MLGKMSRNVTLSDEQSRLNARLEAHMVYICPECGKAFRTQAEWRQHLNTK
HDYLKKTYSDFNFIQIDERFHECQLCFKWVENAHKTIALLQYHYFMHLEH
SETYRCVHCRMAYTRRRALNVHLLDTHMREIEKYENKLRQMKRQQAKPTT
AAAPAGNAEKPMAVKPRGRPKGSTNRKQNDLLQKALMDIDLNTEMEKSPV
TALAAPVNEPKPISNVSELNLDRCLNAYEDIVRKEEKEVVPKYDDELDAL
CKEFFDDGPSAGKGEANEEQQQDDAHLQQGNQEVVIIEIDALGKEEVAQL
KKEMKSDPISQPTKRRRISTTPSRDSDTEMSTNGLTKLISYLCPKCGKEI
ASMDGWRAHVFKKHDFEHIIENSFKILESGRKAMCLQCREVQPTTVRSQL
QKHCFKHLPYRSYLKCTLCDRTKTSTSKILNHIRYNHQEELQRKNKTQLL
IKPEPMWASPNKSGQAAMADDAGSEDDQGEQAVCEHCDRVFRSKWRYERH
IASCRRSGAGKSVEGTVEALLNHLREGHMRMNAIWKTMQREKPASFLDH
BO16327.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1024-PE | 543 | CG1024-PE | 1..543 | 1..543 | 2896 | 100 | Plus |
| CG1024-PD | 543 | CG1024-PD | 1..543 | 1..543 | 2896 | 100 | Plus |
| CG1024-PB | 539 | CG1024-PB | 1..539 | 5..543 | 2876 | 100 | Plus |
| CG6791-PB | 1243 | CG6791-PB | 746..1177 | 22..437 | 232 | 22.5 | Plus |
| CG6791-PA | 1112 | CG6791-PA | 752..847 | 341..437 | 173 | 35.1 | Plus |
| CG6791-PB | 1243 | CG6791-PB | 512..617 | 339..444 | 172 | 29.9 | Plus |
| CG6791-PB | 1243 | CG6791-PB | 160..263 | 23..131 | 168 | 37.6 | Plus |
| CG6791-PB | 1243 | CG6791-PB | 261..472 | 245..488 | 168 | 23.9 | Plus |
| CG6791-PB | 1243 | CG6791-PB | 509..610 | 23..127 | 168 | 37.1 | Plus |
| CG6791-PB | 1243 | CG6791-PB | 327..446 | 10..127 | 165 | 34.4 | Plus |
| CG6791-PB | 1243 | CG6791-PB | 926..1038 | 10..123 | 163 | 33.6 | Plus |
