Clone Sequence Records
BO16328.3prime Sequence
692 bp (692 high quality bases) assembled on 2006-10-13
> BO16328.3prime
ATGGTCTAGAAAGCTTGCATATAAACCTTCTGGCGGAAACATAGACTCAA
TGTTGTGGCAGTACGCCACCAGTGATCTGTCCTTGTCATCCGGGAATATT
TTACCCAAAAACTCGAGCAATCCAGGCTGATTCTGTACAATTTCGGCGTA
CTCTTCAAACGCTATCACCCCATCCTTGTCAGTGTCGAATTTTCCGAATA
TGAACTCGCACATGTCCGCTCGCAATTCGTTGACCTCGTCGTCGTCATCG
CCAGTGAAGAATTGTTCAATGGCCACGCCGACCACCTCGCGATTCAGAAC
CACAGCACCACCGCTTGTATAAACCTCAAATGCGAACTTCATTCGCTCCT
GCAGACTTCCGTTGAAGAACACACAGAACAGCCGCATCCAGGCTTCTGGA
GAGACTGATCGGCCATCCTGCGTGATATTCATCGAAATCCGGTCGATGAT
GGTCACGTCGAAGATCCCAAAGCTGACGAGGAATAGATTGTACAGCTGGC
TGGTGGACATCATGCGGGACCTGTTGTTCAGGGCGTACTTGTAAAACACG
ATCAGCAAGCTGACCACTTCGTTGGTGGAAAACTCCGTGGAGGCAGCGAA
GCTCTTGATCAAAGTACTGTACATGGTGAGGAACTTGTTGTTGGCCATGT
CGTCCAGGGTAAGGTCGATGCGGTTCATGTCGACTGATAACT
BO16328.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15179-PA | 663 | CG15179-RA | 1..660 | 678..19 | 3300 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:09:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sunz-RA | 921 | CG15179-RA | 95..754 | 678..19 | 3300 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:09:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6630245..6630600 | 678..323 | 1780 | 100 | Minus |
3R | 32079331 | 3R | 6630819..6631017 | 217..19 | 995 | 100 | Minus |
3R | 32079331 | 3R | 6630652..6630762 | 326..216 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:09:21 has no hits.
BO16328.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:59 Download gff for
BO16328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15179-PA | 1..663 | 15..678 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:37 Download gff for
BO16328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sunz-RA | 91..757 | 15..686 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:09 Download gff for
BO16328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sunz-RA | 91..757 | 15..686 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:09 Download gff for
BO16328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6630654..6630761 | 217..324 | 100 | -> | Minus |
3R | 6630241..6630598 | 325..686 | 98 | -> | Minus |
3R | 6630820..6631020 | 15..216 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:37 Download gff for
BO16328.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2455963..2456320 | 325..686 | 98 | -> | Minus |
arm_3R | 2456376..2456483 | 217..324 | 100 | -> | Minus |
arm_3R | 2456542..2456742 | 15..216 | 99 | | Minus |
BO16328.5prime Sequence
692 bp (692 high quality bases) assembled on 2006-10-13
> BO16328.5prime
GAAGTTATCAGTCGACATGAACCGCATCGACCTTACCCTGGACGACATGG
CCAACAACAAGTTCCTCACCATGTACAGTACTTTGATCAAGAGCTTCGCT
GCCTCCACGGAGTTTTCCACCAACGAAGTGGTCAGCTTGCTGATCGTGTT
TTACAAGTACGCCCTGAACAACAGGTCCCGCATGATGTCCACCAGCCAGC
TGTACAATCTATTCCTCGTCAGCTTTGGGATCTTCGACGTGACCATCATC
GACCGGATTTCGATGAATATCACGCAGGATGGCCGATCAGTCTCTCCAGA
AGCCTGGATGCGGCTGTTCTGTGTGTTCTTCAACGGAAGTCTGCAGGAGC
GAATGAAGTTCGCATTTGAGGTTTATACAAGCGGTGGTGCTGTGGTTCTG
AATCGCGAGGTGGTCGGCGTGGCCATTGAACAATTCTTCACTGGCGATGA
CGACGACGAGGTCAACGAATTGCGAGCGGACATGTGCGAGTTCATATTCG
GAAAATTCGACACTGACAAGGATGGGGTGATAGCGTTTGAAGAGTACGCC
GAAATTGTACAGAATCAGCCTGGATTGCTCGAGTTTTTGGGTAAAATATT
CCCGGATGACAAGGACAGATCACTGGTGGCGTACTGCCACAACATTGAGT
CTATGTTTCCGCCAGAAGGTTTATATGCAAGCTTTCTAGACC
BO16328.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15179-PA | 663 | CG15179-RA | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sunz-RA | 921 | CG15179-RA | 95..754 | 17..676 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6630245..6630600 | 17..372 | 1780 | 100 | Plus |
3R | 32079331 | 3R | 6630819..6631017 | 478..676 | 995 | 100 | Plus |
3R | 32079331 | 3R | 6630652..6630762 | 369..479 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:00:22 has no hits.
BO16328.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:00 Download gff for
BO16328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15179-PA | 1..663 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:46 Download gff for
BO16328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sunz-RA | 91..757 | 9..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:57 Download gff for
BO16328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sunz-RA | 91..757 | 9..680 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:57 Download gff for
BO16328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6630241..6630598 | 9..370 | 98 | -> | Plus |
3R | 6630654..6630761 | 371..478 | 100 | -> | Plus |
3R | 6630820..6631020 | 479..680 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:46 Download gff for
BO16328.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2455963..2456320 | 9..370 | 98 | -> | Plus |
arm_3R | 2456376..2456483 | 371..478 | 100 | -> | Plus |
arm_3R | 2456542..2456742 | 479..680 | 99 | | Plus |
BO16328.complete Sequence
694 bp assembled on 2006-10-11
GenBank Submission: FJ633787
> BO16328.complete
GAAGTTATCAGTCGACATGAACCGCATCGACCTTACCCTGGACGACATGG
CCAACAACAAGTTCCTCACCATGTACAGTACTTTGATCAAGAGCTTCGCT
GCCTCCACGGAGTTTTCCACCAACGAAGTGGTCAGCTTGCTGATCGTGTT
TTACAAGTACGCCCTGAACAACAGGTCCCGCATGATGTCCACCAGCCAGC
TGTACAATCTATTCCTCGTCAGCTTTGGGATCTTCGACGTGACCATCATC
GACCGGATTTCGATGAATATCACGCAGGATGGCCGATCAGTCTCTCCAGA
AGCCTGGATGCGGCTGTTCTGTGTGTTCTTCAACGGAAGTCTGCAGGAGC
GAATGAAGTTCGCATTTGAGGTTTATACAAGCGGTGGTGCTGTGGTTCTG
AATCGCGAGGTGGTCGGCGTGGCCATTGAACAATTCTTCACTGGCGATGA
CGACGACGAGGTCAACGAATTGCGAGCGGACATGTGCGAGTTCATATTCG
GAAAATTCGACACTGACAAGGATGGGGTGATAGCGTTTGAAGAGTACGCC
GAAATTGTACAGAATCAGCCTGGATTGCTCGAGTTTTTGGGTAAAATATT
CCCGGATGACAAGGACAGATCACTGGTGGCGTACTGCCACAACATTGAGT
CTATGTTTCCGCCAGAAGGTTTATATGCAAGCTTTCTAGACCAT
BO16328.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sunz-RA | 663 | CG15179-PA | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sunz-RA | 921 | CG15179-RA | 95..754 | 17..676 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6630245..6630600 | 17..372 | 1780 | 100 | Plus |
3R | 32079331 | 3R | 6630819..6631017 | 478..676 | 995 | 100 | Plus |
3R | 32079331 | 3R | 6630652..6630762 | 369..479 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:01:37 has no hits.
BO16328.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:46 Download gff for
BO16328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sunz-RA | 1..663 | 17..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:53 Download gff for
BO16328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sunz-RA | 72..738 | 9..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:52 Download gff for
BO16328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sunz-RA | 95..754 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:47 Download gff for
BO16328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sunz-RA | 92..758 | 9..680 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:39 Download gff for
BO16328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sunz-RA | 95..754 | 17..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:39 Download gff for
BO16328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6630245..6630598 | 17..370 | 100 | -> | Plus |
3R | 6630654..6630761 | 371..478 | 100 | -> | Plus |
3R | 6630820..6631017 | 479..678 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:52 Download gff for
BO16328.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2455967..2456320 | 17..370 | 100 | -> | Plus |
arm_3R | 2456376..2456483 | 371..478 | 100 | -> | Plus |
arm_3R | 2456542..2456739 | 479..678 | 99 | | Plus |
BO16328.pep Sequence
Translation from 16 to 694
> BO16328.pep
MNRIDLTLDDMANNKFLTMYSTLIKSFAASTEFSTNEVVSLLIVFYKYAL
NNRSRMMSTSQLYNLFLVSFGIFDVTIIDRISMNITQDGRSVSPEAWMRL
FCVFFNGSLQERMKFAFEVYTSGGAVVLNREVVGVAIEQFFTGDDDDEVN
ELRADMCEFIFGKFDTDKDGVIAFEEYAEIVQNQPGLLEFLGKIFPDDKD
RSLVAYCHNIESMFPPEGLYASFLDH
BO16328.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sunz-PA | 220 | CG15179-PA | 1..220 | 1..220 | 1132 | 100 | Plus |
sowi-PA | 217 | CG15178-PA | 1..213 | 1..211 | 529 | 45.1 | Plus |
CG15177-PA | 225 | CG15177-PA | 1..216 | 1..213 | 507 | 47.2 | Plus |
CG15177-PB | 217 | CG15177-PB | 1..208 | 1..213 | 465 | 44.9 | Plus |
d-cup-PA | 219 | CG14387-PA | 2..217 | 3..218 | 426 | 39.4 | Plus |