Clone BO16328 Report

Search the DGRC for BO16328

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:28
Vector:pDNR-Dual
Associated Gene/Transcriptsunz-RA
Protein status:BO16328.pep: validated full length
Sequenced Size:694

Clone Sequence Records

BO16328.3prime Sequence

692 bp (692 high quality bases) assembled on 2006-10-13

> BO16328.3prime
ATGGTCTAGAAAGCTTGCATATAAACCTTCTGGCGGAAACATAGACTCAA
TGTTGTGGCAGTACGCCACCAGTGATCTGTCCTTGTCATCCGGGAATATT
TTACCCAAAAACTCGAGCAATCCAGGCTGATTCTGTACAATTTCGGCGTA
CTCTTCAAACGCTATCACCCCATCCTTGTCAGTGTCGAATTTTCCGAATA
TGAACTCGCACATGTCCGCTCGCAATTCGTTGACCTCGTCGTCGTCATCG
CCAGTGAAGAATTGTTCAATGGCCACGCCGACCACCTCGCGATTCAGAAC
CACAGCACCACCGCTTGTATAAACCTCAAATGCGAACTTCATTCGCTCCT
GCAGACTTCCGTTGAAGAACACACAGAACAGCCGCATCCAGGCTTCTGGA
GAGACTGATCGGCCATCCTGCGTGATATTCATCGAAATCCGGTCGATGAT
GGTCACGTCGAAGATCCCAAAGCTGACGAGGAATAGATTGTACAGCTGGC
TGGTGGACATCATGCGGGACCTGTTGTTCAGGGCGTACTTGTAAAACACG
ATCAGCAAGCTGACCACTTCGTTGGTGGAAAACTCCGTGGAGGCAGCGAA
GCTCTTGATCAAAGTACTGTACATGGTGAGGAACTTGTTGTTGGCCATGT
CGTCCAGGGTAAGGTCGATGCGGTTCATGTCGACTGATAACT

BO16328.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG15179-PA 663 CG15179-RA 1..660 678..19 3300 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:09:25
Subject Length Description Subject Range Query Range Score Percent Strand
sunz-RA 921 CG15179-RA 95..754 678..19 3300 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6630245..6630600 678..323 1780 100 Minus
3R 32079331 3R 6630819..6631017 217..19 995 100 Minus
3R 32079331 3R 6630652..6630762 326..216 555 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:09:21 has no hits.

BO16328.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:48:59 Download gff for BO16328.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15179-PA 1..663 15..678 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:37 Download gff for BO16328.3prime
Subject Subject Range Query Range Percent Splice Strand
sunz-RA 91..757 15..686 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:09 Download gff for BO16328.3prime
Subject Subject Range Query Range Percent Splice Strand
sunz-RA 91..757 15..686 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:09 Download gff for BO16328.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6630654..6630761 217..324 100 -> Minus
3R 6630241..6630598 325..686 98 -> Minus
3R 6630820..6631020 15..216 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:37 Download gff for BO16328.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2455963..2456320 325..686 98 -> Minus
arm_3R 2456376..2456483 217..324 100 -> Minus
arm_3R 2456542..2456742 15..216 99   Minus

BO16328.5prime Sequence

692 bp (692 high quality bases) assembled on 2006-10-13

> BO16328.5prime
GAAGTTATCAGTCGACATGAACCGCATCGACCTTACCCTGGACGACATGG
CCAACAACAAGTTCCTCACCATGTACAGTACTTTGATCAAGAGCTTCGCT
GCCTCCACGGAGTTTTCCACCAACGAAGTGGTCAGCTTGCTGATCGTGTT
TTACAAGTACGCCCTGAACAACAGGTCCCGCATGATGTCCACCAGCCAGC
TGTACAATCTATTCCTCGTCAGCTTTGGGATCTTCGACGTGACCATCATC
GACCGGATTTCGATGAATATCACGCAGGATGGCCGATCAGTCTCTCCAGA
AGCCTGGATGCGGCTGTTCTGTGTGTTCTTCAACGGAAGTCTGCAGGAGC
GAATGAAGTTCGCATTTGAGGTTTATACAAGCGGTGGTGCTGTGGTTCTG
AATCGCGAGGTGGTCGGCGTGGCCATTGAACAATTCTTCACTGGCGATGA
CGACGACGAGGTCAACGAATTGCGAGCGGACATGTGCGAGTTCATATTCG
GAAAATTCGACACTGACAAGGATGGGGTGATAGCGTTTGAAGAGTACGCC
GAAATTGTACAGAATCAGCCTGGATTGCTCGAGTTTTTGGGTAAAATATT
CCCGGATGACAAGGACAGATCACTGGTGGCGTACTGCCACAACATTGAGT
CTATGTTTCCGCCAGAAGGTTTATATGCAAGCTTTCTAGACC

BO16328.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG15179-PA 663 CG15179-RA 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
sunz-RA 921 CG15179-RA 95..754 17..676 3300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6630245..6630600 17..372 1780 100 Plus
3R 32079331 3R 6630819..6631017 478..676 995 100 Plus
3R 32079331 3R 6630652..6630762 369..479 555 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:00:22 has no hits.

BO16328.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:00 Download gff for BO16328.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15179-PA 1..663 17..680 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:46 Download gff for BO16328.5prime
Subject Subject Range Query Range Percent Splice Strand
sunz-RA 91..757 9..680 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:38:57 Download gff for BO16328.5prime
Subject Subject Range Query Range Percent Splice Strand
sunz-RA 91..757 9..680 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:38:57 Download gff for BO16328.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6630241..6630598 9..370 98 -> Plus
3R 6630654..6630761 371..478 100 -> Plus
3R 6630820..6631020 479..680 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:46 Download gff for BO16328.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2455963..2456320 9..370 98 -> Plus
arm_3R 2456376..2456483 371..478 100 -> Plus
arm_3R 2456542..2456742 479..680 99   Plus

BO16328.complete Sequence

694 bp assembled on 2006-10-11

GenBank Submission: FJ633787

> BO16328.complete
GAAGTTATCAGTCGACATGAACCGCATCGACCTTACCCTGGACGACATGG
CCAACAACAAGTTCCTCACCATGTACAGTACTTTGATCAAGAGCTTCGCT
GCCTCCACGGAGTTTTCCACCAACGAAGTGGTCAGCTTGCTGATCGTGTT
TTACAAGTACGCCCTGAACAACAGGTCCCGCATGATGTCCACCAGCCAGC
TGTACAATCTATTCCTCGTCAGCTTTGGGATCTTCGACGTGACCATCATC
GACCGGATTTCGATGAATATCACGCAGGATGGCCGATCAGTCTCTCCAGA
AGCCTGGATGCGGCTGTTCTGTGTGTTCTTCAACGGAAGTCTGCAGGAGC
GAATGAAGTTCGCATTTGAGGTTTATACAAGCGGTGGTGCTGTGGTTCTG
AATCGCGAGGTGGTCGGCGTGGCCATTGAACAATTCTTCACTGGCGATGA
CGACGACGAGGTCAACGAATTGCGAGCGGACATGTGCGAGTTCATATTCG
GAAAATTCGACACTGACAAGGATGGGGTGATAGCGTTTGAAGAGTACGCC
GAAATTGTACAGAATCAGCCTGGATTGCTCGAGTTTTTGGGTAAAATATT
CCCGGATGACAAGGACAGATCACTGGTGGCGTACTGCCACAACATTGAGT
CTATGTTTCCGCCAGAAGGTTTATATGCAAGCTTTCTAGACCAT

BO16328.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:01:38
Subject Length Description Subject Range Query Range Score Percent Strand
sunz-RA 663 CG15179-PA 1..660 17..676 3300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
sunz-RA 921 CG15179-RA 95..754 17..676 3300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6630245..6630600 17..372 1780 100 Plus
3R 32079331 3R 6630819..6631017 478..676 995 100 Plus
3R 32079331 3R 6630652..6630762 369..479 555 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:01:37 has no hits.

BO16328.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:46 Download gff for BO16328.complete
Subject Subject Range Query Range Percent Splice Strand
sunz-RA 1..663 17..680 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:53 Download gff for BO16328.complete
Subject Subject Range Query Range Percent Splice Strand
sunz-RA 72..738 9..680 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:52 Download gff for BO16328.complete
Subject Subject Range Query Range Percent Splice Strand
sunz-RA 95..754 17..678 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:47 Download gff for BO16328.complete
Subject Subject Range Query Range Percent Splice Strand
sunz-RA 92..758 9..680 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:08:39 Download gff for BO16328.complete
Subject Subject Range Query Range Percent Splice Strand
sunz-RA 95..754 17..678 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:08:39 Download gff for BO16328.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6630245..6630598 17..370 100 -> Plus
3R 6630654..6630761 371..478 100 -> Plus
3R 6630820..6631017 479..678 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:52 Download gff for BO16328.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2455967..2456320 17..370 100 -> Plus
arm_3R 2456376..2456483 371..478 100 -> Plus
arm_3R 2456542..2456739 479..678 99   Plus

BO16328.pep Sequence

Translation from 16 to 694

> BO16328.pep
MNRIDLTLDDMANNKFLTMYSTLIKSFAASTEFSTNEVVSLLIVFYKYAL
NNRSRMMSTSQLYNLFLVSFGIFDVTIIDRISMNITQDGRSVSPEAWMRL
FCVFFNGSLQERMKFAFEVYTSGGAVVLNREVVGVAIEQFFTGDDDDEVN
ELRADMCEFIFGKFDTDKDGVIAFEEYAEIVQNQPGLLEFLGKIFPDDKD
RSLVAYCHNIESMFPPEGLYASFLDH

BO16328.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
sunz-PA 220 CG15179-PA 1..220 1..220 1132 100 Plus
sowi-PA 217 CG15178-PA 1..213 1..211 529 45.1 Plus
CG15177-PA 225 CG15177-PA 1..216 1..213 507 47.2 Plus
CG15177-PB 217 CG15177-PB 1..208 1..213 465 44.9 Plus
d-cup-PA 219 CG14387-PA 2..217 3..218 426 39.4 Plus