Clone BO16332 Report

Search the DGRC for BO16332

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG13994-RA
Protein status:BO16332.pep: validated full length
Sequenced Size:523

Clone Sequence Records

BO16332.3prime Sequence

521 bp (521 high quality bases) assembled on 2006-10-13

> BO16332.3prime
ATGGTCTAGAAAGCTTGCCGAGCTGCCCGTCTGCTCAAAGTCAACACCTG
GGGTAGGTGGTTTTGGATCGGTCTTCGATTCAACAGGCTCGGCTGGCGGT
TGACTGATGTGCGCGGCCTGCGTTGATGTCGAAGGTCCTTCCGGATGCGA
CGCCTCCGTGCATGGTTTGTCCCCGTGATTGTGATTGTGTTTTGCGTTTC
TCTGACGCTTTTCCGGATGTCCAAAGCAGTGCTCACAGTCTTCGTCATCC
TCAGAGGAGCTCTCGCCGAACGCGAGAGGTTTTTTGTAAATGCAGCAGCA
TTTGGACTTCTTGCGATTCAAATGCTCGTTGTCGATGATCCCAGCGTGAA
AGGCCACCCGGCGTTCATTACGCGGATGTTCGAGGCGCAACAGAAGAGTG
GGTGTGGTCCGGCCCGATTCCAATTGAGCACGGGCATCGGTTTCGTCAAT
TATTTCAGTTGTCGAGCCATTGGATGTCTCATTGTTCGTGCTCTGCTTAT
GTGCCATGTCGACTGATAACT

BO16332.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG13994-PA 492 CG13994-RA 1..489 507..19 2395 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:09:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG13994-RB 589 CG13994-RB 35..523 507..19 2415 99.6 Minus
CG13994-RA 631 CG13994-RA 35..523 507..19 2415 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6063283..6063563 299..19 1405 100 Minus
2L 23513712 2L 6063023..6063231 507..299 1015 99 Minus
Blast to na_te.dros performed 2015-02-06 10:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3481..3541 219..279 125 67.2 Plus

BO16332.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:05 Download gff for BO16332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13994-PA 1..492 18..507 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:42 Download gff for BO16332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13994-RA 29..523 19..514 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:11 Download gff for BO16332.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13994-RA 29..523 19..514 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:11 Download gff for BO16332.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6063017..6063230 300..514 97 -> Minus
2L 6063283..6063563 19..299 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:42 Download gff for BO16332.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6063017..6063230 300..514 97 -> Minus
arm_2L 6063283..6063563 19..299 100   Minus

BO16332.5prime Sequence

521 bp (521 high quality bases) assembled on 2006-10-13

> BO16332.5prime
GAAGTTATCAGTCGACATGGCACATAAGCAGAGCACGAACAATGAGACAT
CCAATGGCTCGACAACTGAAATAATTGACGAAACCGATGCCCGTGCTCAA
TTGGAATCGGGCCGGACCACACCCACTCTTCTGTTGCGCCTCGAACATCC
GCGTAATGAACGCCGGGTGGCCTTTCACGCTGGGATCATCGACAACGAGC
ATTTGAATCGCAAGAAGTCCAAATGCTGCTGCATTTACAAAAAACCTCTC
GCGTTCGGCGAGAGCTCCTCTGAGGATGACGAAGACTGTGAGCACTGCTT
TGGACATCCGGAAAAGCGTCAGAGAAACGCAAAACACAATCACAATCACG
GGGACAAACCATGCACGGAGGCGTCGCATCCGGAAGGACCTTCGACATCA
ACGCAGGCCGCGCACATCAGTCAACCGCCAGCCGAGCCTGTTGAATCGAA
GACCGATCCAAAACCACCTACCCCAGGTGTTGACTTTGAGCAGACGGGCA
GCTCGGCAAGCTTTCTAGACC

BO16332.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13994-PA 492 CG13994-RA 1..489 17..505 2395 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13994-RB 589 CG13994-RB 35..523 17..505 2415 99.6 Plus
CG13994-RA 631 CG13994-RA 35..523 17..505 2415 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6063283..6063563 225..505 1405 100 Plus
2L 23513712 2L 6063023..6063231 17..225 1015 99 Plus
Blast to na_te.dros performed 2015-01-31 10:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3481..3541 305..245 125 67.2 Minus

BO16332.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:06 Download gff for BO16332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13994-PA 1..492 17..506 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:31:58 Download gff for BO16332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13994-RA 29..523 10..505 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:45 Download gff for BO16332.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13994-RA 29..523 10..505 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:45 Download gff for BO16332.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6063017..6063230 10..224 97 -> Plus
2L 6063283..6063563 225..505 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:31:58 Download gff for BO16332.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6063017..6063230 10..224 97 -> Plus
arm_2L 6063283..6063563 225..505 100   Plus

BO16332.complete Sequence

523 bp assembled on 2006-10-11

GenBank Submission: FJ633788

> BO16332.complete
GAAGTTATCAGTCGACATGGCACATAAGCAGAGCACGAACAATGAGACAT
CCAATGGCTCGACAACTGAAATAATTGACGAAACCGATGCCCGTGCTCAA
TTGGAATCGGGCCGGACCACACCCACTCTTCTGTTGCGCCTCGAACATCC
GCGTAATGAACGCCGGGTGGCCTTTCACGCTGGGATCATCGACAACGAGC
ATTTGAATCGCAAGAAGTCCAAATGCTGCTGCATTTACAAAAAACCTCTC
GCGTTCGGCGAGAGCTCCTCTGAGGATGACGAAGACTGTGAGCACTGCTT
TGGACATCCGGAAAAGCGTCAGAGAAACGCAAAACACAATCACAATCACG
GGGACAAACCATGCACGGAGGCGTCGCATCCGGAAGGACCTTCGACATCA
ACGCAGGCCGCGCACATCAGTCAACCGCCAGCCGAGCCTGTTGAATCGAA
GACCGATCCAAAACCACCTACCCCAGGTGTTGACTTTGAGCAGACGGGCA
GCTCGGCAAGCTTTCTAGACCAT

BO16332.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13994-RB 492 CG13994-PB 1..489 17..505 2415 99.6 Plus
CG13994-RA 492 CG13994-PA 1..489 17..505 2415 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG13994-RB 589 CG13994-RB 35..523 17..505 2415 99.6 Plus
CG13994-RA 631 CG13994-RA 35..523 17..505 2415 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6063283..6063563 225..505 1405 100 Plus
2L 23513712 2L 6063023..6063231 17..225 1015 99 Plus
Blast to na_te.dros performed 2014-11-27 10:47:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 3481..3541 305..245 125 67.2 Minus

BO16332.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:49 Download gff for BO16332.complete
Subject Subject Range Query Range Percent Splice Strand
CG13994-RA 1..492 17..506 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:55 Download gff for BO16332.complete
Subject Subject Range Query Range Percent Splice Strand
CG13994-RA 1..494 14..505 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:10 Download gff for BO16332.complete
Subject Subject Range Query Range Percent Splice Strand
CG13994-RA 35..523 17..507 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:49 Download gff for BO16332.complete
Subject Subject Range Query Range Percent Splice Strand
CG13994-RA 1..494 14..505 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:58 Download gff for BO16332.complete
Subject Subject Range Query Range Percent Splice Strand
CG13994-RA 35..523 17..507 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:58 Download gff for BO16332.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6063023..6063230 17..224 99 -> Plus
2L 6063283..6063563 225..507 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:10 Download gff for BO16332.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6063023..6063230 17..224 99 -> Plus
arm_2L 6063283..6063563 225..507 99   Plus

BO16332.pep Sequence

Translation from 16 to 523

> BO16332.pep
MAHKQSTNNETSNGSTTEIIDETDARAQLESGRTTPTLLLRLEHPRNERR
VAFHAGIIDNEHLNRKKSKCCCIYKKPLAFGESSSEDDEDCEHCFGHPEK
RQRNAKHNHNHGDKPCTEASHPEGPSTSTQAAHISQPPAEPVESKTDPKP
PTPGVDFEQTGSSASFLDH

BO16332.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13994-PB 163 CG13994-PB 1..163 1..163 891 100 Plus
CG13994-PA 163 CG13994-PA 1..163 1..163 891 100 Plus
I-3-PB 215 CG11233-PB 30..167 6..147 278 43.1 Plus