Clone Sequence Records
BO16332.3prime Sequence
521 bp (521 high quality bases) assembled on 2006-10-13
> BO16332.3prime
ATGGTCTAGAAAGCTTGCCGAGCTGCCCGTCTGCTCAAAGTCAACACCTG
GGGTAGGTGGTTTTGGATCGGTCTTCGATTCAACAGGCTCGGCTGGCGGT
TGACTGATGTGCGCGGCCTGCGTTGATGTCGAAGGTCCTTCCGGATGCGA
CGCCTCCGTGCATGGTTTGTCCCCGTGATTGTGATTGTGTTTTGCGTTTC
TCTGACGCTTTTCCGGATGTCCAAAGCAGTGCTCACAGTCTTCGTCATCC
TCAGAGGAGCTCTCGCCGAACGCGAGAGGTTTTTTGTAAATGCAGCAGCA
TTTGGACTTCTTGCGATTCAAATGCTCGTTGTCGATGATCCCAGCGTGAA
AGGCCACCCGGCGTTCATTACGCGGATGTTCGAGGCGCAACAGAAGAGTG
GGTGTGGTCCGGCCCGATTCCAATTGAGCACGGGCATCGGTTTCGTCAAT
TATTTCAGTTGTCGAGCCATTGGATGTCTCATTGTTCGTGCTCTGCTTAT
GTGCCATGTCGACTGATAACT
BO16332.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13994-PA | 492 | CG13994-RA | 1..489 | 507..19 | 2395 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13994-RB | 589 | CG13994-RB | 35..523 | 507..19 | 2415 | 99.6 | Minus |
CG13994-RA | 631 | CG13994-RA | 35..523 | 507..19 | 2415 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:09:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6063283..6063563 | 299..19 | 1405 | 100 | Minus |
2L | 23513712 | 2L | 6063023..6063231 | 507..299 | 1015 | 99 | Minus |
Blast to na_te.dros performed 2015-02-06 10:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 3481..3541 | 219..279 | 125 | 67.2 | Plus |
BO16332.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:05 Download gff for
BO16332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-PA | 1..492 | 18..507 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:42 Download gff for
BO16332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-RA | 29..523 | 19..514 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:11 Download gff for
BO16332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-RA | 29..523 | 19..514 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:11 Download gff for
BO16332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6063017..6063230 | 300..514 | 97 | -> | Minus |
2L | 6063283..6063563 | 19..299 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:42 Download gff for
BO16332.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6063017..6063230 | 300..514 | 97 | -> | Minus |
arm_2L | 6063283..6063563 | 19..299 | 100 | | Minus |
BO16332.5prime Sequence
521 bp (521 high quality bases) assembled on 2006-10-13
> BO16332.5prime
GAAGTTATCAGTCGACATGGCACATAAGCAGAGCACGAACAATGAGACAT
CCAATGGCTCGACAACTGAAATAATTGACGAAACCGATGCCCGTGCTCAA
TTGGAATCGGGCCGGACCACACCCACTCTTCTGTTGCGCCTCGAACATCC
GCGTAATGAACGCCGGGTGGCCTTTCACGCTGGGATCATCGACAACGAGC
ATTTGAATCGCAAGAAGTCCAAATGCTGCTGCATTTACAAAAAACCTCTC
GCGTTCGGCGAGAGCTCCTCTGAGGATGACGAAGACTGTGAGCACTGCTT
TGGACATCCGGAAAAGCGTCAGAGAAACGCAAAACACAATCACAATCACG
GGGACAAACCATGCACGGAGGCGTCGCATCCGGAAGGACCTTCGACATCA
ACGCAGGCCGCGCACATCAGTCAACCGCCAGCCGAGCCTGTTGAATCGAA
GACCGATCCAAAACCACCTACCCCAGGTGTTGACTTTGAGCAGACGGGCA
GCTCGGCAAGCTTTCTAGACC
BO16332.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13994-PA | 492 | CG13994-RA | 1..489 | 17..505 | 2395 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:03:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13994-RB | 589 | CG13994-RB | 35..523 | 17..505 | 2415 | 99.6 | Plus |
CG13994-RA | 631 | CG13994-RA | 35..523 | 17..505 | 2415 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6063283..6063563 | 225..505 | 1405 | 100 | Plus |
2L | 23513712 | 2L | 6063023..6063231 | 17..225 | 1015 | 99 | Plus |
Blast to na_te.dros performed 2015-01-31 10:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 3481..3541 | 305..245 | 125 | 67.2 | Minus |
BO16332.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:06 Download gff for
BO16332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-PA | 1..492 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:31:58 Download gff for
BO16332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-RA | 29..523 | 10..505 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:45 Download gff for
BO16332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-RA | 29..523 | 10..505 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:45 Download gff for
BO16332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6063017..6063230 | 10..224 | 97 | -> | Plus |
2L | 6063283..6063563 | 225..505 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:31:58 Download gff for
BO16332.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6063017..6063230 | 10..224 | 97 | -> | Plus |
arm_2L | 6063283..6063563 | 225..505 | 100 | | Plus |
BO16332.complete Sequence
523 bp assembled on 2006-10-11
GenBank Submission: FJ633788
> BO16332.complete
GAAGTTATCAGTCGACATGGCACATAAGCAGAGCACGAACAATGAGACAT
CCAATGGCTCGACAACTGAAATAATTGACGAAACCGATGCCCGTGCTCAA
TTGGAATCGGGCCGGACCACACCCACTCTTCTGTTGCGCCTCGAACATCC
GCGTAATGAACGCCGGGTGGCCTTTCACGCTGGGATCATCGACAACGAGC
ATTTGAATCGCAAGAAGTCCAAATGCTGCTGCATTTACAAAAAACCTCTC
GCGTTCGGCGAGAGCTCCTCTGAGGATGACGAAGACTGTGAGCACTGCTT
TGGACATCCGGAAAAGCGTCAGAGAAACGCAAAACACAATCACAATCACG
GGGACAAACCATGCACGGAGGCGTCGCATCCGGAAGGACCTTCGACATCA
ACGCAGGCCGCGCACATCAGTCAACCGCCAGCCGAGCCTGTTGAATCGAA
GACCGATCCAAAACCACCTACCCCAGGTGTTGACTTTGAGCAGACGGGCA
GCTCGGCAAGCTTTCTAGACCAT
BO16332.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:47:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13994-RB | 492 | CG13994-PB | 1..489 | 17..505 | 2415 | 99.6 | Plus |
CG13994-RA | 492 | CG13994-PA | 1..489 | 17..505 | 2415 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13994-RB | 589 | CG13994-RB | 35..523 | 17..505 | 2415 | 99.6 | Plus |
CG13994-RA | 631 | CG13994-RA | 35..523 | 17..505 | 2415 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:47:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6063283..6063563 | 225..505 | 1405 | 100 | Plus |
2L | 23513712 | 2L | 6063023..6063231 | 17..225 | 1015 | 99 | Plus |
Blast to na_te.dros performed 2014-11-27 10:47:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 3481..3541 | 305..245 | 125 | 67.2 | Minus |
BO16332.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:49 Download gff for
BO16332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-RA | 1..492 | 17..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:55 Download gff for
BO16332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-RA | 1..494 | 14..505 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:10 Download gff for
BO16332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-RA | 35..523 | 17..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:49 Download gff for
BO16332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-RA | 1..494 | 14..505 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:58 Download gff for
BO16332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13994-RA | 35..523 | 17..507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:58 Download gff for
BO16332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6063023..6063230 | 17..224 | 99 | -> | Plus |
2L | 6063283..6063563 | 225..507 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:10 Download gff for
BO16332.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6063023..6063230 | 17..224 | 99 | -> | Plus |
arm_2L | 6063283..6063563 | 225..507 | 99 | | Plus |
BO16332.pep Sequence
Translation from 16 to 523
> BO16332.pep
MAHKQSTNNETSNGSTTEIIDETDARAQLESGRTTPTLLLRLEHPRNERR
VAFHAGIIDNEHLNRKKSKCCCIYKKPLAFGESSSEDDEDCEHCFGHPEK
RQRNAKHNHNHGDKPCTEASHPEGPSTSTQAAHISQPPAEPVESKTDPKP
PTPGVDFEQTGSSASFLDH
BO16332.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13994-PB | 163 | CG13994-PB | 1..163 | 1..163 | 891 | 100 | Plus |
CG13994-PA | 163 | CG13994-PA | 1..163 | 1..163 | 891 | 100 | Plus |
I-3-PB | 215 | CG11233-PB | 30..167 | 6..147 | 278 | 43.1 | Plus |