Clone Sequence Records
BO16336.3prime Sequence
901 bp (754 high quality bases) assembled on 2006-10-13
> BO16336.3prime
ATGGTCTAGAAAGCTTGCACGCCTCTTGGCCGGCGGACCGTTACGGGGCT
TGTTGTGCACCATGTTAACGCACTTGGGGATATGACGCTCCGCAGCCTGT
TCGTTGAATCGGCGACCACAGTGGGGACACTGGACATAGTCTGGATTCTC
CGAAGGTGGCGGTGGTGGCAGGTCGCTCAACTTGCCGCCGCGCGCCAAGT
GCGCCTTCACCTGCTTGGCCGCTCTAATCGACTGAATGAAGTCCTCGTGC
TTCTTACGCCAGTTGTTCTTCTTCACTCCAGTGGTCAGACCCTTCTGCTG
GGCAGCACTACTGTAAGTTGAACGGTTGCGATTGCCCTTCGACTTCATAT
TGAACGCCGCGGCCTCGGTGCCCTCGATCCGCTGCTTGGAGGCATCGAAT
ATCTTGCGTTTGGTGGTCAGCATGCGCTGGCACACCTCCTCGTGCTTCGC
CAGACGATCCGTGTTGAAGTGGCGTCCGCAGTAGCGGCATAAAGCGGTGC
CCTCTGGGATTGCAGTCGTTGTGTCCATGTTGACCTTTTTAACTGGTGAT
TTGGGTTCCGCCCGTCGAACAAATGGTGGCGAAAGACGACCGGCTGTCGG
GGCAGCACCGGTTCCTCCACTTACTCGTTGGGTCGCCTGAATCTTGGGAC
TGCGTTGTGGCGCGGGAGAACGTTGGTGGAGCGTGGTCTCCTGGGCCGGC
GGTGTCTTGCGGGTGACCACGGGCTTAAGGTTGCGATTCAAAGTCCCGCG
GGGCGTGGCGAACTTATTGTTATTGCTGTCACTAGTGATCCTCCTGCCTG
GTGCATTTGGTGCATCCCGCATGGTCAAGTCGGCCACGCCCTTGACGAGA
CGCTGCATTGGGGGCTGCGGGCGAGATTTTGTTTGGGCGGGTGGCGAGGG
C
BO16336.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10999-PA | 1152 | CG10999-RA | 267..1149 | 901..19 | 4415 | 100 | Minus |
CG10999-PB | 1152 | CG10999-RB | 267..1149 | 901..19 | 4415 | 100 | Minus |
CG10999-PC | 564 | CG10999-RC | 18..561 | 562..19 | 2720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42675-RG | 1448 | CG42675-RG | 501..1383 | 901..19 | 4415 | 100 | Minus |
CG42675-RF | 1834 | CG42675-RF | 887..1769 | 901..19 | 4415 | 100 | Minus |
CG42675-RE | 1474 | CG42675-RE | 527..1409 | 901..19 | 4415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5818248..5818755 | 526..19 | 2540 | 100 | Minus |
3R | 32079331 | 3R | 5817728..5818068 | 901..561 | 1705 | 100 | Minus |
3R | 32079331 | 3R | 5818151..5818188 | 562..525 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:48:16 has no hits.
BO16336.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:11 Download gff for
BO16336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10999-PB | 267..1152 | 16..901 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:06:27 Download gff for
BO16336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42675-RE | 527..1409 | 19..901 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:28 Download gff for
BO16336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42675-RE | 527..1409 | 19..901 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:28 Download gff for
BO16336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5817728..5818067 | 562..901 | 100 | -> | Minus |
3R | 5818152..5818187 | 526..561 | 100 | -> | Minus |
3R | 5818249..5818755 | 19..525 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:06:27 Download gff for
BO16336.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1643450..1643789 | 562..901 | 100 | -> | Minus |
arm_3R | 1643874..1643909 | 526..561 | 100 | -> | Minus |
arm_3R | 1643971..1644477 | 19..525 | 100 | | Minus |
BO16336.5prime Sequence
864 bp (836 high quality bases) assembled on 2006-10-13
> BO16336.5prime
GAAGTTATCAGTCGACATGGCGTCACAAGGTTCCGGAGATATGAAGACCT
CAAGGCTGGCGCAAATGCAGATGCGTTTCCAGCAGCGCACGCAACAGGAG
CAGGAGGTGCGTAGGCGGGAGCTGATGAGCACGAAGTCAAGTGCCGAGAA
CCTGGCCACTGGAGCACCCAGTGCCGCCACCACCAGGTTGATCGGGAATG
GGAAAGTGCGCCAGATGTTCGACGAGCGCCGCCGCGGGGCGGGCATTGAT
CGCAGCAATCCCCTCAAGCCGATCGGCACTCTGCCCTCGCCACCCGCCCA
AACAAAATCTCGCCCGCAGCCCCCAATGCAGCGTCTCGTCAAGGGCGTGG
CCGACTTGACCATGCGGGATGCACCAAATGCACCAGGCAGGAGGATCACT
AGTGACAGCAATAACAATAAGTTCGCCACGCCCCGCGGGACTTTGAATCG
CAACCTTAAGCCCGTGGTCACCCGCAAGACACCGCCGGCCCAGGAGACCA
CGCTCCACCAACGTTCTCCCGCGCCACAACGCAGTCCCAAGATTCAGGCG
ACCCAACGAGTAAGTGGAGGAACCGGTGCTGCCCCGACAGCCGGTCGTCT
TTCGCCACCATTTGTTCGACGGGCGGAACCCAAATCACCAGTTAAAAAGG
TCAACATGGACACAACGACTGCAATCCCAGAGGGCACCGCTTTATGCCGC
TACTGCGGACGCCACTTCAACACGGATCGTCTGGCGAAGCACGAGGAGGT
GTGCCAGCGCATGCTGACCACCAAACGCAAGATATTCGATGCCTCCAAGC
AGCGGATCGAGGGCACCGAGGCCGCGGCGTTCAATATGAAGTCGAAGGGC
AATCGCAACCGTTC
BO16336.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10999-PA | 1152 | CG10999-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
CG10999-PB | 1152 | CG10999-RB | 1..848 | 17..864 | 4240 | 100 | Plus |
CG10999-PC | 564 | CG10999-RC | 18..260 | 622..864 | 1215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42675-RF | 1834 | CG42675-RF | 621..1468 | 17..864 | 4240 | 100 | Plus |
CG42675-RC | 1765 | CG42675-RC | 552..1399 | 17..864 | 4240 | 100 | Plus |
CG42675-RB | 1688 | CG42675-RB | 475..1322 | 17..864 | 4240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5817513..5818068 | 68..623 | 2780 | 100 | Plus |
3R | 32079331 | 3R | 5818248..5818454 | 658..864 | 1035 | 100 | Plus |
3R | 32079331 | 3R | 5815230..5815283 | 17..70 | 270 | 100 | Plus |
3R | 32079331 | 3R | 5818151..5818188 | 622..659 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:37:38 has no hits.
BO16336.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:12 Download gff for
BO16336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10999-PB | 1..848 | 17..864 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:35 Download gff for
BO16336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42675-RB | 475..1322 | 17..864 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:03 Download gff for
BO16336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42675-RB | 475..1322 | 17..864 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:03 Download gff for
BO16336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5815230..5815283 | 17..70 | 100 | -> | Plus |
3R | 5817516..5818067 | 71..622 | 100 | -> | Plus |
3R | 5818152..5818187 | 623..658 | 100 | -> | Plus |
3R | 5818249..5818454 | 659..864 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:35 Download gff for
BO16336.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1643971..1644176 | 659..864 | 100 | | Plus |
arm_3R | 1640952..1641005 | 17..70 | 100 | -> | Plus |
arm_3R | 1643238..1643789 | 71..622 | 100 | -> | Plus |
arm_3R | 1643874..1643909 | 623..658 | 100 | -> | Plus |
BO16336.complete Sequence
1183 bp assembled on 2006-10-11
GenBank Submission: FJ633789
> BO16336.complete
GAAGTTATCAGTCGACATGGCGTCACAAGGTTCCGGAGATATGAAGACCT
CAAGGCTGGCGCAAATGCAGATGCGTTTCCAGCAGCGCACGCAACAGGAG
CAGGAGGTGCGTAGGCGGGAGCTGATGAGCACGAAGTCAAGTGCCGAGAA
CCTGGCCACTGGAGCACCCAGTGCCGCCACCACCAGGTTGATCGGGAATG
GGAAAGTGCGCCAGATGTTCGACGAGCGCCGCCGCGGGGCGGGCATTGAT
CGCAGCAATCCCCTCAAGCCGATCGGCACTCTGCCCTCGCCACCCGCCCA
AACAAAATCTCGCCCGCAGCCCCCAATGCAGCGTCTCGTCAAGGGCGTGG
CCGACTTGACCATGCGGGATGCACCAAATGCACCAGGCAGGAGGATCACT
AGTGACAGCAATAACAATAAGTTCGCCACGCCCCGCGGGACTTTGAATCG
CAACCTTAAGCCCGTGGTCACCCGCAAGACACCGCCGGCCCAGGAGACCA
CGCTCCACCAACGTTCTCCCGCGCCACAACGCAGTCCCAAGATTCAGGCG
ACCCAACGAGTAAGTGGAGGAACCGGTGCTGCCCCGACAGCCGGTCGTCT
TTCGCCACCATTTGTTCGACGGGCGGAACCCAAATCACCAGTTAAAAAGG
TCAACATGGACACAACGACTGCAATCCCAGAGGGCACCGCTTTATGCCGC
TACTGCGGACGCCACTTCAACACGGATCGTCTGGCGAAGCACGAGGAGGT
GTGCCAGCGCATGCTGACCACCAAACGCAAGATATTCGATGCCTCCAAGC
AGCGGATCGAGGGCACCGAGGCCGCGGCGTTCAATATGAAGTCGAAGGGC
AATCGCAACCGTTCAACTTACAGTAGTGCTGCCCAGCAGAAGGGTCTGAC
CACTGGAGTGAAGAAGAACAACTGGCGTAAGAAGCACGAGGACTTCATTC
AGTCGATTAGAGCGGCCAAGCAGGTGAAGGCGCACTTGGCGCGCGGCGGC
AAGTTGAGCGACCTGCCACCACCGCCACCTTCGGAGAATCCAGACTATGT
CCAGTGTCCCCACTGTGGTCGCCGATTCAACGAACAGGCTGCGGAGCGTC
ATATCCCCAAGTGCGTTAACATGGTGCACAACAAGCCCCGTAACGGTCCG
CCGGCCAAGAGGCGTGCAAGCTTTCTAGACCAT
BO16336.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:33:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42675-RF | 1152 | CG42675-PF | 1..1149 | 17..1165 | 5745 | 100 | Plus |
CG42675-RC | 1152 | CG42675-PC | 1..1149 | 17..1165 | 5745 | 100 | Plus |
CG42675-RB | 1152 | CG42675-PB | 1..1149 | 17..1165 | 5745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42675-RF | 1834 | CG42675-RF | 621..1769 | 17..1165 | 5745 | 100 | Plus |
CG42675-RC | 1765 | CG42675-RC | 552..1700 | 17..1165 | 5745 | 100 | Plus |
CG42675-RB | 1688 | CG42675-RB | 475..1623 | 17..1165 | 5745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5817513..5818068 | 68..623 | 2780 | 100 | Plus |
3R | 32079331 | 3R | 5818248..5818755 | 658..1165 | 2540 | 100 | Plus |
3R | 32079331 | 3R | 5815230..5815283 | 17..70 | 270 | 100 | Plus |
3R | 32079331 | 3R | 5818151..5818188 | 622..659 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:33:38 has no hits.
BO16336.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:52 Download gff for
BO16336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10999-RB | 1..1152 | 17..1168 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:56 Download gff for
BO16336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10999-RB | 552..1700 | 17..1165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:32 Download gff for
BO16336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42675-RB | 475..1623 | 17..1167 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:53 Download gff for
BO16336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10999-RB | 552..1700 | 17..1165 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:48 Download gff for
BO16336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42675-RB | 475..1623 | 17..1167 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:48 Download gff for
BO16336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5815230..5815283 | 17..70 | 100 | -> | Plus |
3R | 5817516..5818067 | 71..622 | 100 | -> | Plus |
3R | 5818152..5818187 | 623..658 | 100 | -> | Plus |
3R | 5818249..5818755 | 659..1167 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:32 Download gff for
BO16336.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1640952..1641005 | 17..70 | 100 | -> | Plus |
arm_3R | 1643238..1643789 | 71..622 | 100 | -> | Plus |
arm_3R | 1643874..1643909 | 623..658 | 100 | -> | Plus |
arm_3R | 1643971..1644477 | 659..1167 | 99 | | Plus |
BO16336.pep Sequence
Translation from 16 to 1183
> BO16336.pep
MASQGSGDMKTSRLAQMQMRFQQRTQQEQEVRRRELMSTKSSAENLATGA
PSAATTRLIGNGKVRQMFDERRRGAGIDRSNPLKPIGTLPSPPAQTKSRP
QPPMQRLVKGVADLTMRDAPNAPGRRITSDSNNNKFATPRGTLNRNLKPV
VTRKTPPAQETTLHQRSPAPQRSPKIQATQRVSGGTGAAPTAGRLSPPFV
RRAEPKSPVKKVNMDTTTAIPEGTALCRYCGRHFNTDRLAKHEEVCQRML
TTKRKIFDASKQRIEGTEAAAFNMKSKGNRNRSTYSSAAQQKGLTTGVKK
NNWRKKHEDFIQSIRAAKQVKAHLARGGKLSDLPPPPPSENPDYVQCPHC
GRRFNEQAAERHIPKCVNMVHNKPRNGPPAKRRASFLDH
BO16336.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42675-PF | 383 | CG42675-PF | 1..383 | 1..383 | 2005 | 100 | Plus |
CG42675-PC | 383 | CG10999-PB | 1..383 | 1..383 | 2005 | 100 | Plus |
CG42675-PB | 383 | CG10999-PA | 1..383 | 1..383 | 2005 | 100 | Plus |
CG42675-PE | 412 | CG42675-PE | 35..412 | 6..383 | 1920 | 97.1 | Plus |
CG42675-PG | 427 | CG42675-PG | 63..427 | 19..383 | 1918 | 100 | Plus |