Clone BO16336 Report

Search the DGRC for BO16336

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG42675-RB
Protein status:BO16336.pep: validated full length
Sequenced Size:1183

Clone Sequence Records

BO16336.3prime Sequence

901 bp (754 high quality bases) assembled on 2006-10-13

> BO16336.3prime
ATGGTCTAGAAAGCTTGCACGCCTCTTGGCCGGCGGACCGTTACGGGGCT
TGTTGTGCACCATGTTAACGCACTTGGGGATATGACGCTCCGCAGCCTGT
TCGTTGAATCGGCGACCACAGTGGGGACACTGGACATAGTCTGGATTCTC
CGAAGGTGGCGGTGGTGGCAGGTCGCTCAACTTGCCGCCGCGCGCCAAGT
GCGCCTTCACCTGCTTGGCCGCTCTAATCGACTGAATGAAGTCCTCGTGC
TTCTTACGCCAGTTGTTCTTCTTCACTCCAGTGGTCAGACCCTTCTGCTG
GGCAGCACTACTGTAAGTTGAACGGTTGCGATTGCCCTTCGACTTCATAT
TGAACGCCGCGGCCTCGGTGCCCTCGATCCGCTGCTTGGAGGCATCGAAT
ATCTTGCGTTTGGTGGTCAGCATGCGCTGGCACACCTCCTCGTGCTTCGC
CAGACGATCCGTGTTGAAGTGGCGTCCGCAGTAGCGGCATAAAGCGGTGC
CCTCTGGGATTGCAGTCGTTGTGTCCATGTTGACCTTTTTAACTGGTGAT
TTGGGTTCCGCCCGTCGAACAAATGGTGGCGAAAGACGACCGGCTGTCGG
GGCAGCACCGGTTCCTCCACTTACTCGTTGGGTCGCCTGAATCTTGGGAC
TGCGTTGTGGCGCGGGAGAACGTTGGTGGAGCGTGGTCTCCTGGGCCGGC
GGTGTCTTGCGGGTGACCACGGGCTTAAGGTTGCGATTCAAAGTCCCGCG
GGGCGTGGCGAACTTATTGTTATTGCTGTCACTAGTGATCCTCCTGCCTG
GTGCATTTGGTGCATCCCGCATGGTCAAGTCGGCCACGCCCTTGACGAGA
CGCTGCATTGGGGGCTGCGGGCGAGATTTTGTTTGGGCGGGTGGCGAGGG
C

BO16336.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10999-PA 1152 CG10999-RA 267..1149 901..19 4415 100 Minus
CG10999-PB 1152 CG10999-RB 267..1149 901..19 4415 100 Minus
CG10999-PC 564 CG10999-RC 18..561 562..19 2720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG42675-RG 1448 CG42675-RG 501..1383 901..19 4415 100 Minus
CG42675-RF 1834 CG42675-RF 887..1769 901..19 4415 100 Minus
CG42675-RE 1474 CG42675-RE 527..1409 901..19 4415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5818248..5818755 526..19 2540 100 Minus
3R 32079331 3R 5817728..5818068 901..561 1705 100 Minus
3R 32079331 3R 5818151..5818188 562..525 190 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:48:16 has no hits.

BO16336.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:11 Download gff for BO16336.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10999-PB 267..1152 16..901 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:06:27 Download gff for BO16336.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42675-RE 527..1409 19..901 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:28 Download gff for BO16336.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42675-RE 527..1409 19..901 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:28 Download gff for BO16336.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5817728..5818067 562..901 100 -> Minus
3R 5818152..5818187 526..561 100 -> Minus
3R 5818249..5818755 19..525 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:06:27 Download gff for BO16336.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1643450..1643789 562..901 100 -> Minus
arm_3R 1643874..1643909 526..561 100 -> Minus
arm_3R 1643971..1644477 19..525 100   Minus

BO16336.5prime Sequence

864 bp (836 high quality bases) assembled on 2006-10-13

> BO16336.5prime
GAAGTTATCAGTCGACATGGCGTCACAAGGTTCCGGAGATATGAAGACCT
CAAGGCTGGCGCAAATGCAGATGCGTTTCCAGCAGCGCACGCAACAGGAG
CAGGAGGTGCGTAGGCGGGAGCTGATGAGCACGAAGTCAAGTGCCGAGAA
CCTGGCCACTGGAGCACCCAGTGCCGCCACCACCAGGTTGATCGGGAATG
GGAAAGTGCGCCAGATGTTCGACGAGCGCCGCCGCGGGGCGGGCATTGAT
CGCAGCAATCCCCTCAAGCCGATCGGCACTCTGCCCTCGCCACCCGCCCA
AACAAAATCTCGCCCGCAGCCCCCAATGCAGCGTCTCGTCAAGGGCGTGG
CCGACTTGACCATGCGGGATGCACCAAATGCACCAGGCAGGAGGATCACT
AGTGACAGCAATAACAATAAGTTCGCCACGCCCCGCGGGACTTTGAATCG
CAACCTTAAGCCCGTGGTCACCCGCAAGACACCGCCGGCCCAGGAGACCA
CGCTCCACCAACGTTCTCCCGCGCCACAACGCAGTCCCAAGATTCAGGCG
ACCCAACGAGTAAGTGGAGGAACCGGTGCTGCCCCGACAGCCGGTCGTCT
TTCGCCACCATTTGTTCGACGGGCGGAACCCAAATCACCAGTTAAAAAGG
TCAACATGGACACAACGACTGCAATCCCAGAGGGCACCGCTTTATGCCGC
TACTGCGGACGCCACTTCAACACGGATCGTCTGGCGAAGCACGAGGAGGT
GTGCCAGCGCATGCTGACCACCAAACGCAAGATATTCGATGCCTCCAAGC
AGCGGATCGAGGGCACCGAGGCCGCGGCGTTCAATATGAAGTCGAAGGGC
AATCGCAACCGTTC

BO16336.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10999-PA 1152 CG10999-RA 1..848 17..864 4240 100 Plus
CG10999-PB 1152 CG10999-RB 1..848 17..864 4240 100 Plus
CG10999-PC 564 CG10999-RC 18..260 622..864 1215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG42675-RF 1834 CG42675-RF 621..1468 17..864 4240 100 Plus
CG42675-RC 1765 CG42675-RC 552..1399 17..864 4240 100 Plus
CG42675-RB 1688 CG42675-RB 475..1322 17..864 4240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5817513..5818068 68..623 2780 100 Plus
3R 32079331 3R 5818248..5818454 658..864 1035 100 Plus
3R 32079331 3R 5815230..5815283 17..70 270 100 Plus
3R 32079331 3R 5818151..5818188 622..659 190 100 Plus
Blast to na_te.dros performed on 2015-02-08 11:37:38 has no hits.

BO16336.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:12 Download gff for BO16336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10999-PB 1..848 17..864 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:35 Download gff for BO16336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42675-RB 475..1322 17..864 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:03 Download gff for BO16336.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42675-RB 475..1322 17..864 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:03 Download gff for BO16336.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5815230..5815283 17..70 100 -> Plus
3R 5817516..5818067 71..622 100 -> Plus
3R 5818152..5818187 623..658 100 -> Plus
3R 5818249..5818454 659..864 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:35 Download gff for BO16336.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1643971..1644176 659..864 100   Plus
arm_3R 1640952..1641005 17..70 100 -> Plus
arm_3R 1643238..1643789 71..622 100 -> Plus
arm_3R 1643874..1643909 623..658 100 -> Plus

BO16336.complete Sequence

1183 bp assembled on 2006-10-11

GenBank Submission: FJ633789

> BO16336.complete
GAAGTTATCAGTCGACATGGCGTCACAAGGTTCCGGAGATATGAAGACCT
CAAGGCTGGCGCAAATGCAGATGCGTTTCCAGCAGCGCACGCAACAGGAG
CAGGAGGTGCGTAGGCGGGAGCTGATGAGCACGAAGTCAAGTGCCGAGAA
CCTGGCCACTGGAGCACCCAGTGCCGCCACCACCAGGTTGATCGGGAATG
GGAAAGTGCGCCAGATGTTCGACGAGCGCCGCCGCGGGGCGGGCATTGAT
CGCAGCAATCCCCTCAAGCCGATCGGCACTCTGCCCTCGCCACCCGCCCA
AACAAAATCTCGCCCGCAGCCCCCAATGCAGCGTCTCGTCAAGGGCGTGG
CCGACTTGACCATGCGGGATGCACCAAATGCACCAGGCAGGAGGATCACT
AGTGACAGCAATAACAATAAGTTCGCCACGCCCCGCGGGACTTTGAATCG
CAACCTTAAGCCCGTGGTCACCCGCAAGACACCGCCGGCCCAGGAGACCA
CGCTCCACCAACGTTCTCCCGCGCCACAACGCAGTCCCAAGATTCAGGCG
ACCCAACGAGTAAGTGGAGGAACCGGTGCTGCCCCGACAGCCGGTCGTCT
TTCGCCACCATTTGTTCGACGGGCGGAACCCAAATCACCAGTTAAAAAGG
TCAACATGGACACAACGACTGCAATCCCAGAGGGCACCGCTTTATGCCGC
TACTGCGGACGCCACTTCAACACGGATCGTCTGGCGAAGCACGAGGAGGT
GTGCCAGCGCATGCTGACCACCAAACGCAAGATATTCGATGCCTCCAAGC
AGCGGATCGAGGGCACCGAGGCCGCGGCGTTCAATATGAAGTCGAAGGGC
AATCGCAACCGTTCAACTTACAGTAGTGCTGCCCAGCAGAAGGGTCTGAC
CACTGGAGTGAAGAAGAACAACTGGCGTAAGAAGCACGAGGACTTCATTC
AGTCGATTAGAGCGGCCAAGCAGGTGAAGGCGCACTTGGCGCGCGGCGGC
AAGTTGAGCGACCTGCCACCACCGCCACCTTCGGAGAATCCAGACTATGT
CCAGTGTCCCCACTGTGGTCGCCGATTCAACGAACAGGCTGCGGAGCGTC
ATATCCCCAAGTGCGTTAACATGGTGCACAACAAGCCCCGTAACGGTCCG
CCGGCCAAGAGGCGTGCAAGCTTTCTAGACCAT

BO16336.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:33:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG42675-RF 1152 CG42675-PF 1..1149 17..1165 5745 100 Plus
CG42675-RC 1152 CG42675-PC 1..1149 17..1165 5745 100 Plus
CG42675-RB 1152 CG42675-PB 1..1149 17..1165 5745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG42675-RF 1834 CG42675-RF 621..1769 17..1165 5745 100 Plus
CG42675-RC 1765 CG42675-RC 552..1700 17..1165 5745 100 Plus
CG42675-RB 1688 CG42675-RB 475..1623 17..1165 5745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5817513..5818068 68..623 2780 100 Plus
3R 32079331 3R 5818248..5818755 658..1165 2540 100 Plus
3R 32079331 3R 5815230..5815283 17..70 270 100 Plus
3R 32079331 3R 5818151..5818188 622..659 190 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:33:38 has no hits.

BO16336.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:52 Download gff for BO16336.complete
Subject Subject Range Query Range Percent Splice Strand
CG10999-RB 1..1152 17..1168 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:56 Download gff for BO16336.complete
Subject Subject Range Query Range Percent Splice Strand
CG10999-RB 552..1700 17..1165 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:32 Download gff for BO16336.complete
Subject Subject Range Query Range Percent Splice Strand
CG42675-RB 475..1623 17..1167 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:53 Download gff for BO16336.complete
Subject Subject Range Query Range Percent Splice Strand
CG10999-RB 552..1700 17..1165 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:48 Download gff for BO16336.complete
Subject Subject Range Query Range Percent Splice Strand
CG42675-RB 475..1623 17..1167 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:48 Download gff for BO16336.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5815230..5815283 17..70 100 -> Plus
3R 5817516..5818067 71..622 100 -> Plus
3R 5818152..5818187 623..658 100 -> Plus
3R 5818249..5818755 659..1167 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:32 Download gff for BO16336.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1640952..1641005 17..70 100 -> Plus
arm_3R 1643238..1643789 71..622 100 -> Plus
arm_3R 1643874..1643909 623..658 100 -> Plus
arm_3R 1643971..1644477 659..1167 99   Plus

BO16336.pep Sequence

Translation from 16 to 1183

> BO16336.pep
MASQGSGDMKTSRLAQMQMRFQQRTQQEQEVRRRELMSTKSSAENLATGA
PSAATTRLIGNGKVRQMFDERRRGAGIDRSNPLKPIGTLPSPPAQTKSRP
QPPMQRLVKGVADLTMRDAPNAPGRRITSDSNNNKFATPRGTLNRNLKPV
VTRKTPPAQETTLHQRSPAPQRSPKIQATQRVSGGTGAAPTAGRLSPPFV
RRAEPKSPVKKVNMDTTTAIPEGTALCRYCGRHFNTDRLAKHEEVCQRML
TTKRKIFDASKQRIEGTEAAAFNMKSKGNRNRSTYSSAAQQKGLTTGVKK
NNWRKKHEDFIQSIRAAKQVKAHLARGGKLSDLPPPPPSENPDYVQCPHC
GRRFNEQAAERHIPKCVNMVHNKPRNGPPAKRRASFLDH

BO16336.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG42675-PF 383 CG42675-PF 1..383 1..383 2005 100 Plus
CG42675-PC 383 CG10999-PB 1..383 1..383 2005 100 Plus
CG42675-PB 383 CG10999-PA 1..383 1..383 2005 100 Plus
CG42675-PE 412 CG42675-PE 35..412 6..383 1920 97.1 Plus
CG42675-PG 427 CG42675-PG 63..427 19..383 1918 100 Plus