Clone Sequence Records
BO16338.3prime Sequence
778 bp (729 high quality bases) assembled on 2006-10-13
> BO16338.3prime
ATGGTCTAGAAAGCTTGCGCACGACCCGTATTCCTCCATCCACTTTTCGA
AGCGGGCAACGTCATCGGCAGAGACGGACTTCTTGGTGCGCAGACGGGCG
TCCTGGAAGTCCTGCAAAGTAATCGGCTGGTCAACCTCCTCGCGTCGGAT
TTGCTTAATCTGATCGGGAGTGCGTCCGGAAATGAGGCGCCGCATGGCCA
TCATGGAGGCGTCCCGGCACACGTTGCTTATGTCCGATCCCGAGTAGCCC
TGCAGTTCGTCGCCGATTATTCCGGTGTTCAGACTGGGCGACAGGCATAC
GTCCTTCAGGCAGAGCTTGAGGAGAGCCGATCGGGTGCCCTCGTTTGGGA
GAGGAATATAGATTCGCTTTTCAAAACGTCTCCGGAAAGCCTCATCGATG
TCCCACGGGTGATTGGTGGCCGCCAGCACCATGATCACCTTCTCCTCCTG
CATGCTTGCGTTGAGTCCGTCCATTTGGATGAGCAGCTCGGCCTTGAACC
GCCGACTGGCCTCGTGCTCCGAGTCACTGCCCCTGGAGGCGCATAGGGCG
TCTATCTCGTCGATGAAAATGGTGCTGGGCGCATAAAATCGGGCCATCTC
GAACAGGAGACGCACCAGCTTCTCGCTCTCTCCTCGGTATTTCGAGGTCA
GGGTCGAGGAGGACACGTTGAAGAAGGTGGTTCCACATTCTGTGGCCACC
GCCTTGGCCAGCATGGTTTTGCCTGTTCCCGGCGGACCGACCATCAACAC
TCCACGCCACGGCCGGCGGATTCCCTTG
BO16338.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1193-PA | 1818 | CG1193-RA | 1056..1815 | 778..19 | 3800 | 100 | Minus |
CG1193-PB | 2010 | CG1193-RB | 1248..2007 | 778..19 | 3800 | 100 | Minus |
CG9475-PB | 1170 | Rpt3R-RB | 544..573 | 723..694 | 150 | 100 | Minus |
CG9475-PA | 1266 | Rpt3R-RA | 640..669 | 723..694 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kat-60L1-RH | 2313 | CG1193-RH | 1206..1965 | 778..19 | 3800 | 100 | Minus |
kat-60L1-RG | 2479 | CG1193-RG | 1372..2131 | 778..19 | 3800 | 100 | Minus |
kat-60L1-RF | 2172 | CG1193-RF | 1194..1953 | 778..19 | 3800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:17:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5786303..5786739 | 778..342 | 2185 | 100 | Minus |
3R | 32079331 | 3R | 5786794..5787117 | 342..19 | 1620 | 100 | Minus |
3R | 32079331 | 3R | 5228408..5228838 | 346..776 | 565 | 75.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:17:38 has no hits.
BO16338.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:13 Download gff for
BO16338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1193-PB | 1248..2010 | 18..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:12:06 Download gff for
BO16338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kat-60L1-RF | 1194..1958 | 11..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:28 Download gff for
BO16338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kat-60L1-RF | 1194..1958 | 11..778 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:28 Download gff for
BO16338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5786303..5786739 | 342..778 | 100 | -> | Minus |
3R | 5786795..5787122 | 11..341 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:12:06 Download gff for
BO16338.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1612025..1612461 | 342..778 | 100 | -> | Minus |
arm_3R | 1612517..1612844 | 11..341 | 98 | | Minus |
BO16338.5prime Sequence
928 bp (785 high quality bases) assembled on 2006-10-13
> BO16338.5prime
GAAGTTATCAGTCGACATGTTCAACACCAGTGCACAGAATTGGTTCGGCA
TGGGCCAGACAGCCGTGGATCCGAGCGGCGGAGTGGCCCAGTTGCTCAAC
AACAATTCGAGTCTCTACAATCAGCAGCAGCAGCAGGCGGCGGCGGCGCA
ACATTCCTTCATGCGCCAGCGATCGCTGACCAGCTCCAATCCCGTCCTGG
GGCGTTCAAACGCCTTGGCCACGCGGCCCCAGTCGCCGCCCAACGTCCAG
GTTGAGTACGAGGTGGCGGTACCCTTCGTTCCCACCTACCGGCACACTCC
ATACCACTCGCTCTGGGATCTGCACCAATGCTCTTCCACACCTCCGACAA
GCCTGTCGCACATGGCCCGGATGATGGACTCCCTGATCCTCGACTCGCTA
TCCCCATTTGGCTTCACGAAGATCACGGCCACCAGTCGACCTTCCCGGAA
CGCCAGCTTGAAGAAGAGCTCGGAAGGCGGCCACTCCTCGACAGCAGAGC
GCCACCGGCCCGTCAACAACCTGGGCTCTAATGCACCTGGGGGATTGGGC
ATTGGCGGAAGTGTTCCGTTGCGCAGCAAGCAGCGGCTACCCACGCAAGA
AGTGGCACCACAACCGCGAGCCAGTCAGACGGCCCAAATGCCATTTCCGT
CGCAGCAGCAGGATAATCGGTGGGTGTCCTCCCTGCGTCGGCGGGATCCC
GAGCTGCAGCCCACTTTACCCTCCATCAACAGCAATGCGAACAGCAGCAG
CCTCAGCCAGAGCCACCACGGAAGTGCTGGGACCGTGNNGATTGGCGGGC
GCAGGAGCACCTACACCCGCCGCCAGCATGGGCACAATGCGCCTGGGGCG
ACCCAGCAGGGCATCCGCCATGACCGCCGCCTTGCCGAAAGAGCCGATCC
GTGGAAGCGCTGCGGGGCAGGGAAGCTC
BO16338.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1193-PB | 2010 | CG1193-RB | 1..887 | 17..905 | 4221 | 99.2 | Plus |
CG1193-PA | 1818 | CG1193-RA | 122..695 | 330..905 | 2656 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kat-60L1-RC | 2338 | CG1193-RC | 112..1021 | 16..928 | 4344 | 98.8 | Plus |
kat-60L1-RB | 2467 | CG1193-RB | 112..1021 | 16..928 | 4344 | 98.8 | Plus |
kat-60L1-RG | 2479 | CG1193-RG | 112..1033 | 16..928 | 4214 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:03:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5783216..5783530 | 16..330 | 1575 | 100 | Plus |
3R | 32079331 | 3R | 5785112..5785381 | 330..599 | 1350 | 100 | Plus |
3R | 32079331 | 3R | 5785440..5785761 | 598..921 | 1344 | 95.7 | Plus |
Blast to na_te.dros performed 2015-02-12 19:03:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3243..3321 | 689..769 | 120 | 64.2 | Plus |
BO16338.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:14 Download gff for
BO16338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1193-PB | 1..909 | 17..928 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:28:28 Download gff for
BO16338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kat-60L1-RB | 106..1021 | 9..928 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:54:21 Download gff for
BO16338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kat-60L1-RB | 106..1021 | 9..928 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:54:21 Download gff for
BO16338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5783210..5783530 | 9..330 | 99 | -> | Plus |
3R | 5785113..5785381 | 331..599 | 100 | -> | Plus |
3R | 5785442..5785767 | 600..928 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:28:28 Download gff for
BO16338.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1608932..1609252 | 9..330 | 99 | -> | Plus |
arm_3R | 1610835..1611103 | 331..599 | 100 | -> | Plus |
arm_3R | 1611164..1611489 | 600..928 | 96 | | Plus |
BO16338.complete Sequence
2041 bp assembled on 2006-12-18
GenBank Submission: FJ638748
> BO16338.complete
GAAGTTATCAGTCGACATGTTCAACACCAGTGCACAGAATTGGTTCGGCA
TGGGCCAGACAGCCGTGGATCCGAGCGGCGGAGTGGCCCAGTTGCTCAAC
AACAATTCGAGTCTCTACAATCAGCAGCAGCAGCAGGCGGCGGCGGCGCA
ACATTCCTTCATGCGCCAGCGATCGCTGACCAGCTCCAATCCCGTCCTGG
GGCGTTCAAACGCCTTGGCCACGCGGCCCCAGTCGCCGCCCAACGTCCAG
GTTGAGTACGAGGTGGCGGTACCCTTCGTTCCCACCTACCGGCACACTCC
ATACCACTCGCTCTGGGATCTGCACCAATGCTCTTCCACACCTCCGACAA
GCCTGTCGCACATGGCCCGGATGATGGACTCCCTGATCCTCGACTCGCTA
TCCCCATTTGGCTTCACGAAGATCACGGCCACCAGTCGACCTTCCCGGAA
CGCCAGCTTGAAGAAGAGCTCGGAAGGCGGCCACTCCTCGACAGCAGAGC
GCCACCGGCCCGTCAACAACCTGGGCTCTAATGCACCTGGGGGATTGGGC
ATTGGCGGAAGTGTTCCGTTGCGCAGCAAGCAGCGGCTACCCACGCAAGA
AGTGGCACCACAACCGCGAGCCAGTCAGACGGCCCAAATGCCATTTCCGT
CGCAGCAGCAGGATAATCGGTGGGTGTCCTCCCTGCGTCGGCGGGATCCC
GAGCTGCAGCCCACTTTACCCTCCATCAACAGCAATGCGAACAGCAGCAG
CCTCAGCCAGAGCCACCACGGAAGTGCTGGGAACGTGGGATTGGCGGGCG
CAGGAGCACCTACACCCGCCGCCAGCATGGGCACAATGCGCCTGGGGCGA
CCAGCAAGGGCATCCGCCATGACCGCCGCCTTGCGGAAGAGCCGATCCGT
GGAGCGCCTGCGGGCCAGGAAGCTCAGCACAAACACCCAGCTTAACTTGA
AGCACAAGCCGGTTAAGAAGAACTCGCTGGACGAAAACTCCAACTCGGAT
GACCAAGACGCCACCACATCCCTGGAAGACAACTCGCACGCCCAGTCCCT
AGCCACCAGCCACAACACGCCCAAATGCTCACCGAAGACCAAGGCCAAGC
ACTTCTCGCCCTTGGGCTACGAGGTTCATCTGGTGGACACCCTGGAGAAG
GACATTCTGCAGCGCCATCCGTGCATCAAGTGGACCGATGTGGCTGGGCT
CAATGAGGCCAAGACAATACTCCAGGAAGCAGTGGTGCTTCCGGTAATCA
TGCCGGAGTTCTTCAAGGGAATCCGCCGGCCGTGGCGTGGAGTGTTGATG
GTCGGTCCGCCGGGAACAGGCAAAACCATGCTGGCCAAGGCGGTGGCCAC
AGAATGTGGAACCACCTTCTTCAACGTGTCCTCCTCGACCCTGACCTCGA
AATACCGAGGAGAGAGCGAGAAGCTGGTGCGTCTCCTGTTCGAGATGGCC
CGATTTTATGCGCCCAGCACCATTTTCATCGACGAGATAGACGCCCTATG
CGCCTCCAGGGGCAGTGACTCGGAGCACGAGGCCAGTCGGCGGTTCAAGG
CCGAGCTGCTCATCCAAATGGACGGACTCAACGCAAGCATGCAGGAGGAG
AAGGTGATCATGGTGCTGGCGGCCACCAATCACCCGTGGGACATCGATGA
GGCTTTCCGGAGACGTTTTGAAAAGCGAATCTATATTCCTCTCCCAAACG
AGGGCACCCGATCGGCTCTCCTCAAGCTCTGCCTGAAGGACGTATGCCTG
TCGCCCAGTCTGAACACCGGAATAATCGGCGACGAACTGCAGGGCTACTC
GGGATCGGACATAAGCAACGTGTGCCGGGACGCCTCCATGATGGCCATGC
GGCGCCTCATTTCCGGACGCACTCCCGATCAGATTAAGCAAATCCGACGC
GAGGAGGTTGACCAGCCGATTACTTTGCAGGACTTCCAGGACGCCCGTCT
GCGCACCAAGAAGTCCGTCTCTGCCGATGACGTTGCCCGCTTCGAAAAGT
GGATGGAGGAATACGGGTCGTGCGCAAGCTTTCTAGACCAT
BO16338.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kat-60L1-RC | 2010 | CG1193-PC | 1..2007 | 17..2023 | 10035 | 100 | Plus |
kat-60L1-RB | 2010 | CG1193-PB | 1..2007 | 17..2023 | 10035 | 100 | Plus |
kat-60L1-RG | 2022 | CG1193-PG | 1..2019 | 17..2023 | 9880 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kat-60L1-RC | 2338 | CG1193-RC | 112..2119 | 16..2023 | 10040 | 100 | Plus |
kat-60L1-RB | 2467 | CG1193-RB | 112..2119 | 16..2023 | 10040 | 100 | Plus |
kat-60L1-RG | 2479 | CG1193-RG | 112..2131 | 16..2023 | 9885 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5785440..5786068 | 598..1226 | 3145 | 100 | Plus |
3R | 32079331 | 3R | 5786263..5786739 | 1224..1700 | 2385 | 100 | Plus |
3R | 32079331 | 3R | 5786794..5787117 | 1700..2023 | 1620 | 100 | Plus |
3R | 32079331 | 3R | 5783216..5783530 | 16..330 | 1575 | 100 | Plus |
3R | 32079331 | 3R | 5785112..5785381 | 330..599 | 1350 | 100 | Plus |
3R | 32079331 | 3R | 5228408..5228838 | 1696..1266 | 565 | 75.4 | Minus |
Blast to na_te.dros performed 2014-11-27 07:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3243..3321 | 689..769 | 120 | 64.2 | Plus |
BO16338.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:36 Download gff for
BO16338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1193-RB | 1..2010 | 17..2024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:57 Download gff for
BO16338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1193-RB | 106..2124 | 9..2031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:06 Download gff for
BO16338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kat-60L1-RB | 118..2119 | 22..2025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:36 Download gff for
BO16338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1193-RB | 106..2124 | 9..2031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:01 Download gff for
BO16338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kat-60L1-RB | 118..2119 | 22..2025 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:01 Download gff for
BO16338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5783222..5783530 | 22..330 | 100 | -> | Plus |
3R | 5785113..5785381 | 331..599 | 100 | -> | Plus |
3R | 5785442..5786067 | 600..1225 | 100 | -> | Plus |
3R | 5786265..5786739 | 1226..1700 | 100 | -> | Plus |
3R | 5786795..5787117 | 1701..2025 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:06 Download gff for
BO16338.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1608944..1609252 | 22..330 | 100 | -> | Plus |
arm_3R | 1610835..1611103 | 331..599 | 100 | -> | Plus |
arm_3R | 1611164..1611789 | 600..1225 | 100 | -> | Plus |
arm_3R | 1611987..1612461 | 1226..1700 | 100 | -> | Plus |
arm_3R | 1612517..1612839 | 1701..2025 | 99 | | Plus |
BO16338.pep Sequence
Translation from 16 to 2041
> BO16338.pep
MFNTSAQNWFGMGQTAVDPSGGVAQLLNNNSSLYNQQQQQAAAAQHSFMR
QRSLTSSNPVLGRSNALATRPQSPPNVQVEYEVAVPFVPTYRHTPYHSLW
DLHQCSSTPPTSLSHMARMMDSLILDSLSPFGFTKITATSRPSRNASLKK
SSEGGHSSTAERHRPVNNLGSNAPGGLGIGGSVPLRSKQRLPTQEVAPQP
RASQTAQMPFPSQQQDNRWVSSLRRRDPELQPTLPSINSNANSSSLSQSH
HGSAGNVGLAGAGAPTPAASMGTMRLGRPARASAMTAALRKSRSVERLRA
RKLSTNTQLNLKHKPVKKNSLDENSNSDDQDATTSLEDNSHAQSLATSHN
TPKCSPKTKAKHFSPLGYEVHLVDTLEKDILQRHPCIKWTDVAGLNEAKT
ILQEAVVLPVIMPEFFKGIRRPWRGVLMVGPPGTGKTMLAKAVATECGTT
FFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDALCASRGS
DSEHEASRRFKAELLIQMDGLNASMQEEKVIMVLAATNHPWDIDEAFRRR
FEKRIYIPLPNEGTRSALLKLCLKDVCLSPSLNTGIIGDELQGYSGSDIS
NVCRDASMMAMRRLISGRTPDQIKQIRREEVDQPITLQDFQDARLRTKKS
VSADDVARFEKWMEEYGSCASFLDH
BO16338.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kat-60L1-PC | 669 | CG1193-PC | 1..669 | 1..669 | 3451 | 100 | Plus |
kat-60L1-PB | 669 | CG1193-PB | 1..669 | 1..669 | 3451 | 100 | Plus |
kat-60L1-PG | 673 | CG1193-PG | 1..673 | 1..669 | 3436 | 99.4 | Plus |
kat-60L1-PE | 673 | CG1193-PE | 1..673 | 1..669 | 3436 | 99.4 | Plus |
kat-60L1-PF | 605 | CG1193-PF | 42..605 | 106..669 | 2891 | 100 | Plus |