Clone BO16338 Report

Search the DGRC for BO16338

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:38
Vector:pDNR-Dual
Associated Gene/Transcriptkat-60L1-RB
Protein status:BO16338.pep: validated full length
Sequenced Size:2041

Clone Sequence Records

BO16338.3prime Sequence

778 bp (729 high quality bases) assembled on 2006-10-13

> BO16338.3prime
ATGGTCTAGAAAGCTTGCGCACGACCCGTATTCCTCCATCCACTTTTCGA
AGCGGGCAACGTCATCGGCAGAGACGGACTTCTTGGTGCGCAGACGGGCG
TCCTGGAAGTCCTGCAAAGTAATCGGCTGGTCAACCTCCTCGCGTCGGAT
TTGCTTAATCTGATCGGGAGTGCGTCCGGAAATGAGGCGCCGCATGGCCA
TCATGGAGGCGTCCCGGCACACGTTGCTTATGTCCGATCCCGAGTAGCCC
TGCAGTTCGTCGCCGATTATTCCGGTGTTCAGACTGGGCGACAGGCATAC
GTCCTTCAGGCAGAGCTTGAGGAGAGCCGATCGGGTGCCCTCGTTTGGGA
GAGGAATATAGATTCGCTTTTCAAAACGTCTCCGGAAAGCCTCATCGATG
TCCCACGGGTGATTGGTGGCCGCCAGCACCATGATCACCTTCTCCTCCTG
CATGCTTGCGTTGAGTCCGTCCATTTGGATGAGCAGCTCGGCCTTGAACC
GCCGACTGGCCTCGTGCTCCGAGTCACTGCCCCTGGAGGCGCATAGGGCG
TCTATCTCGTCGATGAAAATGGTGCTGGGCGCATAAAATCGGGCCATCTC
GAACAGGAGACGCACCAGCTTCTCGCTCTCTCCTCGGTATTTCGAGGTCA
GGGTCGAGGAGGACACGTTGAAGAAGGTGGTTCCACATTCTGTGGCCACC
GCCTTGGCCAGCATGGTTTTGCCTGTTCCCGGCGGACCGACCATCAACAC
TCCACGCCACGGCCGGCGGATTCCCTTG

BO16338.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1193-PA 1818 CG1193-RA 1056..1815 778..19 3800 100 Minus
CG1193-PB 2010 CG1193-RB 1248..2007 778..19 3800 100 Minus
CG9475-PB 1170 Rpt3R-RB 544..573 723..694 150 100 Minus
CG9475-PA 1266 Rpt3R-RA 640..669 723..694 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-RH 2313 CG1193-RH 1206..1965 778..19 3800 100 Minus
kat-60L1-RG 2479 CG1193-RG 1372..2131 778..19 3800 100 Minus
kat-60L1-RF 2172 CG1193-RF 1194..1953 778..19 3800 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:17:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5786303..5786739 778..342 2185 100 Minus
3R 32079331 3R 5786794..5787117 342..19 1620 100 Minus
3R 32079331 3R 5228408..5228838 346..776 565 75.4 Plus
Blast to na_te.dros performed on 2015-02-10 15:17:38 has no hits.

BO16338.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:13 Download gff for BO16338.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1193-PB 1248..2010 18..778 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:12:06 Download gff for BO16338.3prime
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RF 1194..1958 11..778 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:28 Download gff for BO16338.3prime
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RF 1194..1958 11..778 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:28 Download gff for BO16338.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5786303..5786739 342..778 100 -> Minus
3R 5786795..5787122 11..341 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:12:06 Download gff for BO16338.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1612025..1612461 342..778 100 -> Minus
arm_3R 1612517..1612844 11..341 98   Minus

BO16338.5prime Sequence

928 bp (785 high quality bases) assembled on 2006-10-13

> BO16338.5prime
GAAGTTATCAGTCGACATGTTCAACACCAGTGCACAGAATTGGTTCGGCA
TGGGCCAGACAGCCGTGGATCCGAGCGGCGGAGTGGCCCAGTTGCTCAAC
AACAATTCGAGTCTCTACAATCAGCAGCAGCAGCAGGCGGCGGCGGCGCA
ACATTCCTTCATGCGCCAGCGATCGCTGACCAGCTCCAATCCCGTCCTGG
GGCGTTCAAACGCCTTGGCCACGCGGCCCCAGTCGCCGCCCAACGTCCAG
GTTGAGTACGAGGTGGCGGTACCCTTCGTTCCCACCTACCGGCACACTCC
ATACCACTCGCTCTGGGATCTGCACCAATGCTCTTCCACACCTCCGACAA
GCCTGTCGCACATGGCCCGGATGATGGACTCCCTGATCCTCGACTCGCTA
TCCCCATTTGGCTTCACGAAGATCACGGCCACCAGTCGACCTTCCCGGAA
CGCCAGCTTGAAGAAGAGCTCGGAAGGCGGCCACTCCTCGACAGCAGAGC
GCCACCGGCCCGTCAACAACCTGGGCTCTAATGCACCTGGGGGATTGGGC
ATTGGCGGAAGTGTTCCGTTGCGCAGCAAGCAGCGGCTACCCACGCAAGA
AGTGGCACCACAACCGCGAGCCAGTCAGACGGCCCAAATGCCATTTCCGT
CGCAGCAGCAGGATAATCGGTGGGTGTCCTCCCTGCGTCGGCGGGATCCC
GAGCTGCAGCCCACTTTACCCTCCATCAACAGCAATGCGAACAGCAGCAG
CCTCAGCCAGAGCCACCACGGAAGTGCTGGGACCGTGNNGATTGGCGGGC
GCAGGAGCACCTACACCCGCCGCCAGCATGGGCACAATGCGCCTGGGGCG
ACCCAGCAGGGCATCCGCCATGACCGCCGCCTTGCCGAAAGAGCCGATCC
GTGGAAGCGCTGCGGGGCAGGGAAGCTC

BO16338.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1193-PB 2010 CG1193-RB 1..887 17..905 4221 99.2 Plus
CG1193-PA 1818 CG1193-RA 122..695 330..905 2656 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-RC 2338 CG1193-RC 112..1021 16..928 4344 98.8 Plus
kat-60L1-RB 2467 CG1193-RB 112..1021 16..928 4344 98.8 Plus
kat-60L1-RG 2479 CG1193-RG 112..1033 16..928 4214 97.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5783216..5783530 16..330 1575 100 Plus
3R 32079331 3R 5785112..5785381 330..599 1350 100 Plus
3R 32079331 3R 5785440..5785761 598..921 1344 95.7 Plus
Blast to na_te.dros performed 2015-02-12 19:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3243..3321 689..769 120 64.2 Plus

BO16338.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:14 Download gff for BO16338.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1193-PB 1..909 17..928 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:28:28 Download gff for BO16338.5prime
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RB 106..1021 9..928 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:54:21 Download gff for BO16338.5prime
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RB 106..1021 9..928 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:54:21 Download gff for BO16338.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5783210..5783530 9..330 99 -> Plus
3R 5785113..5785381 331..599 100 -> Plus
3R 5785442..5785767 600..928 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:28:28 Download gff for BO16338.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1608932..1609252 9..330 99 -> Plus
arm_3R 1610835..1611103 331..599 100 -> Plus
arm_3R 1611164..1611489 600..928 96   Plus

BO16338.complete Sequence

2041 bp assembled on 2006-12-18

GenBank Submission: FJ638748

> BO16338.complete
GAAGTTATCAGTCGACATGTTCAACACCAGTGCACAGAATTGGTTCGGCA
TGGGCCAGACAGCCGTGGATCCGAGCGGCGGAGTGGCCCAGTTGCTCAAC
AACAATTCGAGTCTCTACAATCAGCAGCAGCAGCAGGCGGCGGCGGCGCA
ACATTCCTTCATGCGCCAGCGATCGCTGACCAGCTCCAATCCCGTCCTGG
GGCGTTCAAACGCCTTGGCCACGCGGCCCCAGTCGCCGCCCAACGTCCAG
GTTGAGTACGAGGTGGCGGTACCCTTCGTTCCCACCTACCGGCACACTCC
ATACCACTCGCTCTGGGATCTGCACCAATGCTCTTCCACACCTCCGACAA
GCCTGTCGCACATGGCCCGGATGATGGACTCCCTGATCCTCGACTCGCTA
TCCCCATTTGGCTTCACGAAGATCACGGCCACCAGTCGACCTTCCCGGAA
CGCCAGCTTGAAGAAGAGCTCGGAAGGCGGCCACTCCTCGACAGCAGAGC
GCCACCGGCCCGTCAACAACCTGGGCTCTAATGCACCTGGGGGATTGGGC
ATTGGCGGAAGTGTTCCGTTGCGCAGCAAGCAGCGGCTACCCACGCAAGA
AGTGGCACCACAACCGCGAGCCAGTCAGACGGCCCAAATGCCATTTCCGT
CGCAGCAGCAGGATAATCGGTGGGTGTCCTCCCTGCGTCGGCGGGATCCC
GAGCTGCAGCCCACTTTACCCTCCATCAACAGCAATGCGAACAGCAGCAG
CCTCAGCCAGAGCCACCACGGAAGTGCTGGGAACGTGGGATTGGCGGGCG
CAGGAGCACCTACACCCGCCGCCAGCATGGGCACAATGCGCCTGGGGCGA
CCAGCAAGGGCATCCGCCATGACCGCCGCCTTGCGGAAGAGCCGATCCGT
GGAGCGCCTGCGGGCCAGGAAGCTCAGCACAAACACCCAGCTTAACTTGA
AGCACAAGCCGGTTAAGAAGAACTCGCTGGACGAAAACTCCAACTCGGAT
GACCAAGACGCCACCACATCCCTGGAAGACAACTCGCACGCCCAGTCCCT
AGCCACCAGCCACAACACGCCCAAATGCTCACCGAAGACCAAGGCCAAGC
ACTTCTCGCCCTTGGGCTACGAGGTTCATCTGGTGGACACCCTGGAGAAG
GACATTCTGCAGCGCCATCCGTGCATCAAGTGGACCGATGTGGCTGGGCT
CAATGAGGCCAAGACAATACTCCAGGAAGCAGTGGTGCTTCCGGTAATCA
TGCCGGAGTTCTTCAAGGGAATCCGCCGGCCGTGGCGTGGAGTGTTGATG
GTCGGTCCGCCGGGAACAGGCAAAACCATGCTGGCCAAGGCGGTGGCCAC
AGAATGTGGAACCACCTTCTTCAACGTGTCCTCCTCGACCCTGACCTCGA
AATACCGAGGAGAGAGCGAGAAGCTGGTGCGTCTCCTGTTCGAGATGGCC
CGATTTTATGCGCCCAGCACCATTTTCATCGACGAGATAGACGCCCTATG
CGCCTCCAGGGGCAGTGACTCGGAGCACGAGGCCAGTCGGCGGTTCAAGG
CCGAGCTGCTCATCCAAATGGACGGACTCAACGCAAGCATGCAGGAGGAG
AAGGTGATCATGGTGCTGGCGGCCACCAATCACCCGTGGGACATCGATGA
GGCTTTCCGGAGACGTTTTGAAAAGCGAATCTATATTCCTCTCCCAAACG
AGGGCACCCGATCGGCTCTCCTCAAGCTCTGCCTGAAGGACGTATGCCTG
TCGCCCAGTCTGAACACCGGAATAATCGGCGACGAACTGCAGGGCTACTC
GGGATCGGACATAAGCAACGTGTGCCGGGACGCCTCCATGATGGCCATGC
GGCGCCTCATTTCCGGACGCACTCCCGATCAGATTAAGCAAATCCGACGC
GAGGAGGTTGACCAGCCGATTACTTTGCAGGACTTCCAGGACGCCCGTCT
GCGCACCAAGAAGTCCGTCTCTGCCGATGACGTTGCCCGCTTCGAAAAGT
GGATGGAGGAATACGGGTCGTGCGCAAGCTTTCTAGACCAT

BO16338.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-RC 2010 CG1193-PC 1..2007 17..2023 10035 100 Plus
kat-60L1-RB 2010 CG1193-PB 1..2007 17..2023 10035 100 Plus
kat-60L1-RG 2022 CG1193-PG 1..2019 17..2023 9880 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-RC 2338 CG1193-RC 112..2119 16..2023 10040 100 Plus
kat-60L1-RB 2467 CG1193-RB 112..2119 16..2023 10040 100 Plus
kat-60L1-RG 2479 CG1193-RG 112..2131 16..2023 9885 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5785440..5786068 598..1226 3145 100 Plus
3R 32079331 3R 5786263..5786739 1224..1700 2385 100 Plus
3R 32079331 3R 5786794..5787117 1700..2023 1620 100 Plus
3R 32079331 3R 5783216..5783530 16..330 1575 100 Plus
3R 32079331 3R 5785112..5785381 330..599 1350 100 Plus
3R 32079331 3R 5228408..5228838 1696..1266 565 75.4 Minus
Blast to na_te.dros performed 2014-11-27 07:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3243..3321 689..769 120 64.2 Plus

BO16338.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:36 Download gff for BO16338.complete
Subject Subject Range Query Range Percent Splice Strand
CG1193-RB 1..2010 17..2024 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:57 Download gff for BO16338.complete
Subject Subject Range Query Range Percent Splice Strand
CG1193-RB 106..2124 9..2031 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:06 Download gff for BO16338.complete
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RB 118..2119 22..2025 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:36 Download gff for BO16338.complete
Subject Subject Range Query Range Percent Splice Strand
CG1193-RB 106..2124 9..2031 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:01 Download gff for BO16338.complete
Subject Subject Range Query Range Percent Splice Strand
kat-60L1-RB 118..2119 22..2025 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:01 Download gff for BO16338.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5783222..5783530 22..330 100 -> Plus
3R 5785113..5785381 331..599 100 -> Plus
3R 5785442..5786067 600..1225 100 -> Plus
3R 5786265..5786739 1226..1700 100 -> Plus
3R 5786795..5787117 1701..2025 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:06 Download gff for BO16338.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1608944..1609252 22..330 100 -> Plus
arm_3R 1610835..1611103 331..599 100 -> Plus
arm_3R 1611164..1611789 600..1225 100 -> Plus
arm_3R 1611987..1612461 1226..1700 100 -> Plus
arm_3R 1612517..1612839 1701..2025 99   Plus

BO16338.pep Sequence

Translation from 16 to 2041

> BO16338.pep
MFNTSAQNWFGMGQTAVDPSGGVAQLLNNNSSLYNQQQQQAAAAQHSFMR
QRSLTSSNPVLGRSNALATRPQSPPNVQVEYEVAVPFVPTYRHTPYHSLW
DLHQCSSTPPTSLSHMARMMDSLILDSLSPFGFTKITATSRPSRNASLKK
SSEGGHSSTAERHRPVNNLGSNAPGGLGIGGSVPLRSKQRLPTQEVAPQP
RASQTAQMPFPSQQQDNRWVSSLRRRDPELQPTLPSINSNANSSSLSQSH
HGSAGNVGLAGAGAPTPAASMGTMRLGRPARASAMTAALRKSRSVERLRA
RKLSTNTQLNLKHKPVKKNSLDENSNSDDQDATTSLEDNSHAQSLATSHN
TPKCSPKTKAKHFSPLGYEVHLVDTLEKDILQRHPCIKWTDVAGLNEAKT
ILQEAVVLPVIMPEFFKGIRRPWRGVLMVGPPGTGKTMLAKAVATECGTT
FFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDALCASRGS
DSEHEASRRFKAELLIQMDGLNASMQEEKVIMVLAATNHPWDIDEAFRRR
FEKRIYIPLPNEGTRSALLKLCLKDVCLSPSLNTGIIGDELQGYSGSDIS
NVCRDASMMAMRRLISGRTPDQIKQIRREEVDQPITLQDFQDARLRTKKS
VSADDVARFEKWMEEYGSCASFLDH

BO16338.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
kat-60L1-PC 669 CG1193-PC 1..669 1..669 3451 100 Plus
kat-60L1-PB 669 CG1193-PB 1..669 1..669 3451 100 Plus
kat-60L1-PG 673 CG1193-PG 1..673 1..669 3436 99.4 Plus
kat-60L1-PE 673 CG1193-PE 1..673 1..669 3436 99.4 Plus
kat-60L1-PF 605 CG1193-PF 42..605 106..669 2891 100 Plus