Clone Sequence Records
BO16342.3prime Sequence
725 bp (713 high quality bases) assembled on 2006-10-13
> BO16342.3prime
ATGGTCTAGAAAGCTTGCGTCCTTGCAGGTGGACGTGTCCATTGGACTGG
CTGGCTGGATAAAGGCCGTGGCCGCCGAGCTGGGCGGATTGGTTGGCGTA
AACGCCGACAGTGAGGAGTTGCTGCTGCTGTTAACAAGATTGCCGCTGGA
CGAGTTGTTCAGGCTGATGTTCATCAAATTGGACGACGACGACGAAGCGC
TGGAGTGGCTAGTGAGCTGGGCCAGCAGACCTCCACCTCCACCGCCGGCC
AAGAAGGTGGCACTGCCGCCAGCCGAATTTGACGAGCCAAGGCTTAGGCG
TTCGCCTCCCAGATTCGAGAGAAAGCCGCCAGCGGCATTCCCAGCTGACA
CGGACGCAGACGATGAGGAGCTGCCGGTTCCCAAAATGCCCAGCAGTGGG
TTGGTTGAGGTCAGCACGTTCGGTGCGGAAGTGTTCAGGCCCAGCATGGG
CGTTGGGAGTGCTGGCTTGATGAAGCGTTCGCTGGCACGACGATTCACTA
GCTGGCCGCAGGCATAGCAGCGGTTTTGCACCGCCGTGCCCGGACTTAGA
GGTCGGCTACTCGAGGGACTGTGGGAGACGGGACTGCTGATGGTGCGTTG
ACGTTGGGCGCTCACCGCTGAAGCTGCGGCGGCGGCTGCTGCCGTCGCTA
CAGCGAACGAACCGCCTCCCATCAGGTTCTCGTTGTAGAAGCGTTCCTCG
TCCATCTCCAGCGAGGATTCCGATT
BO16342.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-PA | 1599 | CG6664-RA | 890..1596 | 725..19 | 3435 | 99.4 | Minus |
| CG6664-PB | 1599 | CG6664-RB | 890..1596 | 725..19 | 3435 | 99.4 | Minus |
| CG6664-PC | 1599 | CG6664-RC | 890..1596 | 725..19 | 3435 | 99.4 | Minus |
| CG6664-PD | 1716 | CG6664-RD | 1007..1713 | 725..19 | 3435 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-RC | 2603 | CG6664-RC | 1330..2036 | 725..19 | 3475 | 99.4 | Minus |
| CG6664-RB | 2552 | CG6664-RB | 1279..1985 | 725..19 | 3475 | 99.4 | Minus |
| CG6664-RA | 2482 | CG6664-RA | 1209..1915 | 725..19 | 3475 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:37:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17013453..17013930 | 19..496 | 2330 | 99.2 | Plus |
| 3L | 28110227 | 3L | 17013993..17014222 | 496..725 | 1150 | 100 | Plus |
Blast to na_te.dros performed 2015-01-30 18:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2804..2967 | 170..13 | 138 | 57.3 | Minus |
BO16342.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:15 Download gff for
BO16342.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-PD | 1007..1716 | 18..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:24:06 Download gff for
BO16342.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RB | 1279..1985 | 19..725 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:42:25 Download gff for
BO16342.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 1209..1915 | 19..725 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:42:25 Download gff for
BO16342.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17013453..17013929 | 19..495 | 99 | <- | Plus |
| 3L | 17013993..17014222 | 496..725 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:24:06 Download gff for
BO16342.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17006553..17007029 | 19..495 | 99 | <- | Plus |
| arm_3L | 17007093..17007322 | 496..725 | 100 | | Plus |
BO16342.5prime Sequence
788 bp (773 high quality bases) assembled on 2006-10-13
> BO16342.5prime
GAAGTTATCAGTCGACATGTATAATATATATGTGCTTAAAAAGCGACTGG
CATACATTATTTCTCGTCATACATATATGTATATGCTCAAAAAACGTAAT
GGCAATGGGCCATTTACCTTTAGTTTTGCAGGCATGGAAAGTCCCTGTGA
ATCCGAAAGTTCGCTGGACGGCGGCACCATGCTGCCACCAAGCCCAGTTT
CCCGGGAGCAGCTCCAGAAGAGGATCGAATCGCTTACCCAGCAGAACAAG
GTGCTGAAAGCCGAACTGGATACCTTCAAGACCAAGTGCAAAGTGGTGCA
AGAGGAGAATCGCTGCCTCAAGCAAGCCTCAGTCATCATTCAAGCCAAAG
CCGAGCAGGAGGAAGAATACATCTCAAACACGCTGCTAAAAAAGATTCAG
GCCCTCAAAAAGGAGAAGGAGACTCTGGCGCACCACTACGAGCGCGAGGA
GGAGTGTCTGACCAACGATCTCTCCCGGAAGCTCGACCAGCTGCGTCAGG
AGAAGTGCAAGCTGGAGCAGACACTTGAGCAGGAGCAGGAGTGCCTCGTC
AACAAGCTTATGCGCAAGATTGAGAAGCTCCAGGCGGAGACGGACAACAA
GCAGACCAATCTCGAGCAGCTGCGCCGCGAAATGGTCGAGTTGGAGAACA
CGCTTGAGCAGGAACAGGAAGCTCTTGTAAACAAGCTGTGGAAGCGCATG
GACAAGCTGGAGACCGAGAAGCGTTCGCTGCAAATCAAGCTGGATCAGCC
GGTTTCCGATCCGACTACGCCGCGAGACATCACAAACA
BO16342.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-PD | 1716 | CG6664-RD | 1..772 | 17..788 | 3760 | 99.4 | Plus |
| CG6664-PA | 1599 | CG6664-RA | 1..655 | 134..788 | 3200 | 99.5 | Plus |
| CG6664-PB | 1599 | CG6664-RB | 1..655 | 134..788 | 3200 | 99.5 | Plus |
| CG6664-PC | 1599 | CG6664-RC | 1..655 | 134..788 | 3200 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 16:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-RA | 2482 | CG6664-RA | 308..974 | 122..788 | 3290 | 99.6 | Plus |
| CG6664-RB | 2552 | CG6664-RB | 380..1044 | 124..788 | 3280 | 99.5 | Plus |
| CG6664-RC | 2603 | CG6664-RC | 436..1095 | 129..788 | 3255 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 16:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17014457..17014904 | 788..341 | 2240 | 100 | Minus |
| 3L | 28110227 | 3L | 17015140..17015373 | 250..17 | 1110 | 98.3 | Minus |
| 3L | 28110227 | 3L | 17014987..17015077 | 340..250 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 16:09:14 has no hits.
BO16342.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:16 Download gff for
BO16342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-PD | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:28:21 Download gff for
BO16342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 306..973 | 117..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:58:56 Download gff for
BO16342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 306..973 | 117..787 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 18:58:56 Download gff for
BO16342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17014458..17014904 | 341..787 | 100 | <- | Minus |
| 3L | 17014987..17015077 | 250..340 | 100 | <- | Minus |
| 3L | 17015141..17015378 | 9..249 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:28:21 Download gff for
BO16342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17007558..17008004 | 341..787 | 100 | <- | Minus |
| arm_3L | 17008087..17008177 | 250..340 | 100 | <- | Minus |
| arm_3L | 17008241..17008478 | 9..249 | 96 | | Minus |
BO16342.complete Sequence
1747 bp assembled on 2009-08-24
> BO16342.complete
GAAGTTATCAGTCGACATGTATAATATATATGTGCTTAAAAAGCGACTGG
CATACATTATTTCTCGTCATACATATATGTATATGCTCAAAAAACGTAAT
GGCAATGGGCCATTTACCTTTAGTTTTGCAGGCATGGAAAGTCCCTGTGA
ATCCGAAAGTTCGCTGGACGGCGGCACCATGCTGCCACCAAGCCCAGTTT
CCCGGGAGCAGCTCCAGAAGAGGATCGAATCGCTTACCCAGCAGAACAAG
GTGCTGAAAGCCGAACTGGATACCTTCAAGACCAAGTGCAAAGTGGTGCA
AGAGGAGAATCGCTGCCTCAAGCAAGCCTCAGTCATCATTCAAGCCAAAG
CCGAGCAGGAGGAAGAATACATCTCAAACACGCTGCTAAAAAAGATTCAG
GCCCTCAAAAAGGAGAAGGAGACTCTGGCGCACCACTACGAGCGCGAGGA
GGAGTGTCTGACCAACGATCTCTCCCGGAAGCTCGACCAGCTGCGTCAGG
AGAAGTGCAAGCTGGAGCAGACACTTGAGCAGGAGCAGGAGTGCCTCGTC
AACAAGCTTATGCGCAAGATTGAGAAGCTCCAGGCGGAGACGGACAACAA
GCAGACCAATCTCGAGCAGCTGCGCCGCGAAATGGTCGAGTTGGAGAACA
CGCTTGAGCAGGAACAGGAAGCTCTTGTAAACAAGCTGTGGAAGCGCATG
GACAAGCTGGAGACCGAGAAGCGTTCGCTGCAAATCAAGCTGGATCAGCC
GGTTTCCGATCCGACTACGCCGCGAGACATCACAAACAACGCCCATGCCA
ATGGTGGCGATACGGCCACCAGTTTGAGTGCTCATATCCAGATTCTGCGC
TCCGAAGTGCTTCGCTATCGCTCCGACCTGGCGAGCGCTCAGAAGGAAGC
CACTATCAAAACACAGCAGTATGCGCAGGAAGAGAAGTCGATTCGCGAGG
AAAACGCTCGCCTTCAGCGCAAGCTAAAGCAGGAGGTGGAGCGCCGCGAA
GCCCTATGCCGGCACCTCTCCGAATCGGAATCCTCGCTGGAGATGGACGA
GGAACGCTTCTACAACGAGAACCTGATGGGAGGCGGTTCGTTCGCTGTAG
CGACGGCAGCAGCCGCCGCCGCAGCTTCAGCGGTGAGCGCCCAACGTCAA
CGCACCATCAGCAGTCCCGTCTCCCACAGTCCCTCGAGTAGCCGACCTCT
AAGTCCGGGCACGGCGGTGCAAAACCGCTGCTATGCCTGCGGCCAGCTAG
TGAATCGTCGTGCCAGCGAACGCTTCATCAAGCCAGCACTCCCAACGCCC
ATGCTGGGCCTGAACACTTCCGCACCGAACGTGCTGACCTCAACCAACCC
ACTGCTGGGCATTTTGGGAACCGGCAGCTCCTCATCGTCTGCGTCCGTGT
CAGCTGGGAATGCCGCTGGCGGCTTTCTCTCGAATCTGGGAGGCGAACGC
CTAAGCCTTGGCTCGTCAAATTCGGCTGGCGGCAGTGCCACCTTCTTGGC
CGGCGGTGGAGGTGGAGGTCTGCTGGCCCAGCTCACTAGCCACTCCAGCG
CTTCGTCGTCGTCGTCCAATTTGATGAACATCAGCCTGAACAACTCGTCC
AGCGGCAATCTTGTTAACAGCAGCAGCAACTCCTCACTGTCGGCGTTTAC
GCCAACCAATCCGCCCAGCTCGGCGGCCACGGCCTTTATCCAGCCAGCCA
GTCCAATGGACACGTCCACCTGCAAGGACGCAAGCTTTCTAGACCAT
BO16342.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-RC | 1599 | CG6664-PC | 1..1596 | 134..1729 | 7875 | 99.6 | Plus |
| CG6664-RB | 1599 | CG6664-PB | 1..1596 | 134..1729 | 7875 | 99.6 | Plus |
| CG6664-RA | 1599 | CG6664-PA | 1..1596 | 134..1729 | 7875 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-RA | 2482 | CG6664-RA | 308..1915 | 122..1729 | 7935 | 99.6 | Plus |
| CG6664-RB | 2552 | CG6664-RB | 380..1985 | 124..1729 | 7925 | 99.6 | Plus |
| CG6664-RC | 2603 | CG6664-RC | 436..2036 | 129..1729 | 7900 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17013993..17014904 | 1252..341 | 4560 | 100 | Minus |
| 3L | 28110227 | 3L | 17013453..17013930 | 1729..1252 | 2330 | 99.2 | Minus |
| 3L | 28110227 | 3L | 17015140..17015373 | 250..17 | 1110 | 98.3 | Minus |
| 3L | 28110227 | 3L | 17014987..17015077 | 340..250 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:33:36 has no hits.
BO16342.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-26 17:03:07 Download gff for
BO16342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RD | 408..2120 | 17..1731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:51:04 Download gff for
BO16342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 306..1915 | 117..1731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:51:24 Download gff for
BO16342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6664-RA | 306..1915 | 117..1731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:51:24 Download gff for
BO16342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17013993..17014904 | 341..1252 | 100 | <- | Minus |
| 3L | 17014987..17015077 | 250..340 | 100 | <- | Minus |
| 3L | 17015141..17015373 | 17..249 | 98 | | Minus |
| 3L | 17013451..17013929 | 1253..1731 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:51:04 Download gff for
BO16342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17006551..17007029 | 1253..1731 | 98 | <- | Minus |
| arm_3L | 17007093..17008004 | 341..1252 | 100 | <- | Minus |
| arm_3L | 17008087..17008177 | 250..340 | 100 | <- | Minus |
| arm_3L | 17008241..17008473 | 17..249 | 98 | | Minus |
BO16342.pep Sequence
Translation from 16 to 1747
> BO16342.pep
MYNIYVLKKRLAYIISRHTYMYMLKKRNGNGPFTFSFAGMESPCESESSL
DGGTMLPPSPVSREQLQKRIESLTQQNKVLKAELDTFKTKCKVVQEENRC
LKQASVIIQAKAEQEEEYISNTLLKKIQALKKEKETLAHHYEREEECLTN
DLSRKLDQLRQEKCKLEQTLEQEQECLVNKLMRKIEKLQAETDNKQTNLE
QLRREMVELENTLEQEQEALVNKLWKRMDKLETEKRSLQIKLDQPVSDPT
TPRDITNNAHANGGDTATSLSAHIQILRSEVLRYRSDLASAQKEATIKTQ
QYAQEEKSIREENARLQRKLKQEVERREALCRHLSESESSLEMDEERFYN
ENLMGGGSFAVATAAAAAAASAVSAQRQRTISSPVSHSPSSSRPLSPGTA
VQNRCYACGQLVNRRASERFIKPALPTPMLGLNTSAPNVLTSTNPLLGIL
GTGSSSSSASVSAGNAAGGFLSNLGGERLSLGSSNSAGGSATFLAGGGGG
GLLAQLTSHSSASSSSSNLMNISLNNSSSGNLVNSSSNSSLSAFTPTNPP
SSAATAFIQPASPMDTSTCKDASFLDH
BO16342.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:54:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6664-PC | 532 | CG6664-PC | 1..532 | 40..571 | 2647 | 100 | Plus |
| CG6664-PB | 532 | CG6664-PB | 1..532 | 40..571 | 2647 | 100 | Plus |
| CG6664-PA | 532 | CG6664-PA | 1..532 | 40..571 | 2647 | 100 | Plus |
