Clone BO16343 Report

Search the DGRC for BO16343

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG15547-RA
Protein status:BO16343.pep: validated full length
Sequenced Size:1204

Clone Sequence Records

BO16343.3prime Sequence

784 bp (679 high quality bases) assembled on 2006-10-13

> BO16343.3prime
ATGGTCTAGAAAGCTTGCTTCCCCTGGTGGAGCTTCCTCTGCGGGAGCTT
CTGCTGCGTGAGGATGTTCTTCAGCCACTGCAGGGACTTCAGGCGCAGCA
GTAGCCTCTTGGGCAGGAGGAGCCACTTCAGGAGCGGGAGCAGTTTCGCC
TGGCTCCCCAGCAGCAGCGTCACCCTCTTCGGACTCGTCATCTTGAGCTG
GTGGCGGTGGAGCTTCATGAACACTTCGGTCTGACTCCGCATCTGAGCCC
CCAGACTCGCCTACGCCTTCCTCCTCCAGGTCGTGCAGGTCCTCCTTGGA
CTCCTGCTCCTCAGCCTCCGGTTGGATTTCCTCGTAGACAATAACTTCCT
TCCACAAAATCTCCTCGTCCACACAGACTGGCTCCTCGTCATGAGGTTCT
ACGCGCTTATTAAGGTCCAGATCCGAAATACCGGGCTGAGATCTTTCGAA
GCCTCCACAGGTGACACAGGAAGACGATGAGAGCAGCATTGAGGAATGCG
GGGATGTGGTGGACAAGGGTGCACTGCTGCTCTGCGTTTTCTTGACTCCC
GGCTGCGCGGCCCGCGCACTTGGCTTCGGAGCATAGGTCATGGTGGTCTG
CTGCGATTTGTCCTGGATAGCCACATCCGGTCGCTGCTGGCACTGGTTGC
TGATTTCCGGCATCTTTGGATTGCTGCGCACCAGGTAATCGGAAACACGC
ACCTTCCAGTTCTCCTGGCTGCAGTCGGTGTTCTGCATTATGTCGTAGAT
CTCCTCGAGCAGCGGCTTAAGCATCGGCCTGTTG

BO16343.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG15547-PA 1173 CG15547-RA 405..1170 784..19 3830 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG15547-RA 1601 CG15547-RA 509..1274 784..19 3830 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30882119..30882884 19..784 3830 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:37:38 has no hits.

BO16343.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:17 Download gff for BO16343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15547-PA 405..1173 15..784 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:09 Download gff for BO16343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 509..1281 10..784 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:35 Download gff for BO16343.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 509..1281 10..784 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:35 Download gff for BO16343.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30882112..30882884 10..784 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:09 Download gff for BO16343.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26707834..26708606 10..784 99   Plus

BO16343.5prime Sequence

924 bp (791 high quality bases) assembled on 2006-10-13

> BO16343.5prime
GAAGTTATCAGTCGACATGTTTGAGAACTCCCTGTTTATCATTAAGCCGG
ACTATCTGCACAAGCGGCGTCCGGTGCTCTTAAAGTTGCTGGCCGAGGGC
TTCCAGATTCAGGGTAATCGACGGATTGCCTTTTCGCCAGAAACTGCCGC
CGAGTTCTATGCCGATTATGCCGATGAAAAGGGGTTTATGCTGGAGGTCA
TTCTGCTTTCGAAGGGTGTTTCCGAGGCGTTCATAGTTACGAAGGAAAAC
GCCGTGCAGGAGCTGCTCAACATCATGATTTGTTATTTTGGTTCGGCATC
GGATCTGGAACGCAATATCCATGTCACCAAGAACAGTTACAGCGTGGCTC
GTGAGATAAACTTTATTTTTCCCAACTATATTCACGAGCCCCATCAAATG
TTCGACCACAACAACTTCTGCAACAGGCCGATGCTTAAGCCGCTGCTCGA
GGAGATCTACGACATAATGCAGAACACCGACTGCAGCCAGGAGAACTGGA
AGGTGCGTGTTTCCGATTACCTGGTGCGCAGCAATCCAAAGATGCCGGAA
ATCAGCAACCAGTGCCAGCAGCGACCGGATGTGGCTATCCAGGACAAATC
GCAGCAGACCACCATGACCTATGCTCCGAAGCCAAGTGCGCGGGCCGCGC
AGCCGGGAGTCAAGAAAACGCAGAGCAGCAGTGCACCCTTGTCCACCACA
TCCCCGCATTCCTCAATGCTGCTCTCATCGTCTTCCTGTGTCACCTGTGG
AGGCTTCGAAAGATCTCAGCCCGGTATTTCGGATCTGGACCTTAATAAGC
GCGTAGAACCTCATGACAAGGAGCCAGTCTGTGTGGACGAGGAGATTTTG
TGGAANGAAGTTATTGTCTACAAGGAAATCCAACCGGAGGCTGAGGAACA
GGAGCCCAGAGAGGACCTGCACGA

BO16343.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG15547-PA 1173 CG15547-RA 1..908 17..924 4371 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15547-RA 1601 CG15547-RA 101..1012 13..924 4459 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30882381..30882927 924..378 2634 98.7 Minus
3R 32079331 3R 30883128..30883403 288..13 1380 100 Minus
3R 32079331 3R 30882983..30883071 377..289 445 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:55:04 has no hits.

BO16343.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:18 Download gff for BO16343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15547-PA 1..907 17..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:31 Download gff for BO16343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 92..1011 5..923 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:31 Download gff for BO16343.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 92..1011 5..923 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:31 Download gff for BO16343.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30882382..30882927 378..923 98 <- Minus
3R 30882983..30883071 289..377 100 <- Minus
3R 30883128..30883410 5..288 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:31 Download gff for BO16343.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26708104..26708649 378..923 98 <- Minus
arm_3R 26708705..26708793 289..377 100 <- Minus
arm_3R 26708850..26709132 5..288 98   Minus

BO16343.complete Sequence

1204 bp assembled on 2006-10-11

GenBank Submission: FJ633790

> BO16343.complete
GAAGTTATCAGTCGACATGTTTGAGAACTCCCTGTTTATCATTAAGCCGG
ACTATCTGCACAAGCGGCGTCCGGTGCTCTTAAAGTTGCTGGCCGAGGGC
TTCCAGATTCAGGGTAATCGACGGATTGCCTTTTCGCCAGAAACTGCCGC
CGAGTTCTATGCCGATTATGCCGATGAAAAGGGGTTTATGCTGGAGGTCA
TTCTGCTTTCGAAGGGTGTTTCCGAGGCGTTCATAGTTACGAAGGAAAAC
GCCGTGCAGGAGCTGCTCAACATCATGATTTGTTATTTTGGTTCGGCATC
GGATCTGGAACGCAATATCCATGTCACCAAGAACAGTTACAGCGTGGCTC
GTGAGATAAACTTTATTTTTCCCAACTATATTCACGAGCCCCATCAAATG
TTCGACCACAACAACTTCTGCAACAGGCCGATGCTTAAGCCGCTGCTCGA
GGAGATCTACGACATAATGCAGAACACCGACTGCAGCCAGGAGAACTGGA
AGGTGCGTGTTTCCGATTACCTGGTGCGCAGCAATCCAAAGATGCCGGAA
ATCAGCAACCAGTGCCAGCAGCGACCGGATGTGGCTATCCAGGACAAATC
GCAGCAGACCACCATGACCTATGCTCCGAAGCCAAGTGCGCGGGCCGCGC
AGCCGGGAGTCAAGAAAACGCAGAGCAGCAGTGCACCCTTGTCCACCACA
TCCCCGCATTCCTCAATGCTGCTCTCATCGTCTTCCTGTGTCACCTGTGG
AGGCTTCGAAAGATCTCAGCCCGGTATTTCGGATCTGGACCTTAATAAGC
GCGTAGAACCTCATGACGAGGAGCCAGTCTGTGTGGACGAGGAGATTTTG
TGGAAGGAAGTTATTGTCTACGAGGAAATCCAACCGGAGGCTGAGGAGCA
GGAGTCCAAGGAGGACCTGCACGACCTGGAGGAGGAAGGCGTAGGCGAGT
CTGGGGGCTCAGATGCGGAGTCAGACCGAAGTGTTCATGAAGCTCCACCG
CCACCAGCTCAAGATGACGAGTCCGAAGAGGGTGACGCTGCTGCTGGGGA
GCCAGGCGAAACTGCTCCCGCTCCTGAAGTGGCTCCTCCTGCCCAAGAGG
CTACTGCTGCGCCTGAAGTCCCTGCAGTGGCTGAAGAACATCCTCACGCA
GCAGAAGCTCCCGCAGAGGAAGCTCCACCAGGGGAAGCAAGCTTTCTAGA
CCAT

BO16343.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:59:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG15547-RA 1173 CG15547-PA 1..1170 17..1186 5850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:59:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15547-RA 1601 CG15547-RA 101..1274 13..1186 5870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30882119..30882927 1186..378 4045 100 Minus
3R 32079331 3R 30883128..30883403 288..13 1380 100 Minus
3R 32079331 3R 30882983..30883071 377..289 445 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:59:56 has no hits.

BO16343.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:56 Download gff for BO16343.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 1..1173 17..1190 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:58 Download gff for BO16343.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 92..1277 5..1190 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:18 Download gff for BO16343.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 111..1274 23..1188 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:57 Download gff for BO16343.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 92..1277 5..1190 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:28 Download gff for BO16343.complete
Subject Subject Range Query Range Percent Splice Strand
CG15547-RA 111..1274 23..1188 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:28 Download gff for BO16343.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30882117..30882927 378..1188 99 <- Minus
3R 30882983..30883071 289..377 100 <- Minus
3R 30883128..30883393 23..288 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:18 Download gff for BO16343.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26707839..26708649 378..1188 99 <- Minus
arm_3R 26708705..26708793 289..377 100 <- Minus
arm_3R 26708850..26709115 23..288 100   Minus

BO16343.pep Sequence

Translation from 16 to 1204

> BO16343.pep
MFENSLFIIKPDYLHKRRPVLLKLLAEGFQIQGNRRIAFSPETAAEFYAD
YADEKGFMLEVILLSKGVSEAFIVTKENAVQELLNIMICYFGSASDLERN
IHVTKNSYSVAREINFIFPNYIHEPHQMFDHNNFCNRPMLKPLLEEIYDI
MQNTDCSQENWKVRVSDYLVRSNPKMPEISNQCQQRPDVAIQDKSQQTTM
TYAPKPSARAAQPGVKKTQSSSAPLSTTSPHSSMLLSSSSCVTCGGFERS
QPGISDLDLNKRVEPHDEEPVCVDEEILWKEVIVYEEIQPEAEEQESKED
LHDLEEEGVGESGGSDAESDRSVHEAPPPPAQDDESEEGDAAAGEPGETA
PAPEVAPPAQEATAAPEVPAVAEEHPHAAEAPAEEAPPGEASFLDH

BO16343.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG15547-PA 390 CG15547-PA 1..390 1..390 2041 100 Plus