Clone Sequence Records
BO16343.3prime Sequence
784 bp (679 high quality bases) assembled on 2006-10-13
> BO16343.3prime
ATGGTCTAGAAAGCTTGCTTCCCCTGGTGGAGCTTCCTCTGCGGGAGCTT
CTGCTGCGTGAGGATGTTCTTCAGCCACTGCAGGGACTTCAGGCGCAGCA
GTAGCCTCTTGGGCAGGAGGAGCCACTTCAGGAGCGGGAGCAGTTTCGCC
TGGCTCCCCAGCAGCAGCGTCACCCTCTTCGGACTCGTCATCTTGAGCTG
GTGGCGGTGGAGCTTCATGAACACTTCGGTCTGACTCCGCATCTGAGCCC
CCAGACTCGCCTACGCCTTCCTCCTCCAGGTCGTGCAGGTCCTCCTTGGA
CTCCTGCTCCTCAGCCTCCGGTTGGATTTCCTCGTAGACAATAACTTCCT
TCCACAAAATCTCCTCGTCCACACAGACTGGCTCCTCGTCATGAGGTTCT
ACGCGCTTATTAAGGTCCAGATCCGAAATACCGGGCTGAGATCTTTCGAA
GCCTCCACAGGTGACACAGGAAGACGATGAGAGCAGCATTGAGGAATGCG
GGGATGTGGTGGACAAGGGTGCACTGCTGCTCTGCGTTTTCTTGACTCCC
GGCTGCGCGGCCCGCGCACTTGGCTTCGGAGCATAGGTCATGGTGGTCTG
CTGCGATTTGTCCTGGATAGCCACATCCGGTCGCTGCTGGCACTGGTTGC
TGATTTCCGGCATCTTTGGATTGCTGCGCACCAGGTAATCGGAAACACGC
ACCTTCCAGTTCTCCTGGCTGCAGTCGGTGTTCTGCATTATGTCGTAGAT
CTCCTCGAGCAGCGGCTTAAGCATCGGCCTGTTG
BO16343.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15547-PA | 1173 | CG15547-RA | 405..1170 | 784..19 | 3830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15547-RA | 1601 | CG15547-RA | 509..1274 | 784..19 | 3830 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30882119..30882884 | 19..784 | 3830 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:37:38 has no hits.
BO16343.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:17 Download gff for
BO16343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-PA | 405..1173 | 15..784 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:09 Download gff for
BO16343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-RA | 509..1281 | 10..784 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:35 Download gff for
BO16343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-RA | 509..1281 | 10..784 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:35 Download gff for
BO16343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30882112..30882884 | 10..784 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:09 Download gff for
BO16343.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26707834..26708606 | 10..784 | 99 | | Plus |
BO16343.5prime Sequence
924 bp (791 high quality bases) assembled on 2006-10-13
> BO16343.5prime
GAAGTTATCAGTCGACATGTTTGAGAACTCCCTGTTTATCATTAAGCCGG
ACTATCTGCACAAGCGGCGTCCGGTGCTCTTAAAGTTGCTGGCCGAGGGC
TTCCAGATTCAGGGTAATCGACGGATTGCCTTTTCGCCAGAAACTGCCGC
CGAGTTCTATGCCGATTATGCCGATGAAAAGGGGTTTATGCTGGAGGTCA
TTCTGCTTTCGAAGGGTGTTTCCGAGGCGTTCATAGTTACGAAGGAAAAC
GCCGTGCAGGAGCTGCTCAACATCATGATTTGTTATTTTGGTTCGGCATC
GGATCTGGAACGCAATATCCATGTCACCAAGAACAGTTACAGCGTGGCTC
GTGAGATAAACTTTATTTTTCCCAACTATATTCACGAGCCCCATCAAATG
TTCGACCACAACAACTTCTGCAACAGGCCGATGCTTAAGCCGCTGCTCGA
GGAGATCTACGACATAATGCAGAACACCGACTGCAGCCAGGAGAACTGGA
AGGTGCGTGTTTCCGATTACCTGGTGCGCAGCAATCCAAAGATGCCGGAA
ATCAGCAACCAGTGCCAGCAGCGACCGGATGTGGCTATCCAGGACAAATC
GCAGCAGACCACCATGACCTATGCTCCGAAGCCAAGTGCGCGGGCCGCGC
AGCCGGGAGTCAAGAAAACGCAGAGCAGCAGTGCACCCTTGTCCACCACA
TCCCCGCATTCCTCAATGCTGCTCTCATCGTCTTCCTGTGTCACCTGTGG
AGGCTTCGAAAGATCTCAGCCCGGTATTTCGGATCTGGACCTTAATAAGC
GCGTAGAACCTCATGACAAGGAGCCAGTCTGTGTGGACGAGGAGATTTTG
TGGAANGAAGTTATTGTCTACAAGGAAATCCAACCGGAGGCTGAGGAACA
GGAGCCCAGAGAGGACCTGCACGA
BO16343.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15547-PA | 1173 | CG15547-RA | 1..908 | 17..924 | 4371 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15547-RA | 1601 | CG15547-RA | 101..1012 | 13..924 | 4459 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30882381..30882927 | 924..378 | 2634 | 98.7 | Minus |
3R | 32079331 | 3R | 30883128..30883403 | 288..13 | 1380 | 100 | Minus |
3R | 32079331 | 3R | 30882983..30883071 | 377..289 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:55:04 has no hits.
BO16343.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:18 Download gff for
BO16343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-PA | 1..907 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:31 Download gff for
BO16343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-RA | 92..1011 | 5..923 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:31 Download gff for
BO16343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-RA | 92..1011 | 5..923 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:31 Download gff for
BO16343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30882382..30882927 | 378..923 | 98 | <- | Minus |
3R | 30882983..30883071 | 289..377 | 100 | <- | Minus |
3R | 30883128..30883410 | 5..288 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:31 Download gff for
BO16343.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26708104..26708649 | 378..923 | 98 | <- | Minus |
arm_3R | 26708705..26708793 | 289..377 | 100 | <- | Minus |
arm_3R | 26708850..26709132 | 5..288 | 98 | | Minus |
BO16343.complete Sequence
1204 bp assembled on 2006-10-11
GenBank Submission: FJ633790
> BO16343.complete
GAAGTTATCAGTCGACATGTTTGAGAACTCCCTGTTTATCATTAAGCCGG
ACTATCTGCACAAGCGGCGTCCGGTGCTCTTAAAGTTGCTGGCCGAGGGC
TTCCAGATTCAGGGTAATCGACGGATTGCCTTTTCGCCAGAAACTGCCGC
CGAGTTCTATGCCGATTATGCCGATGAAAAGGGGTTTATGCTGGAGGTCA
TTCTGCTTTCGAAGGGTGTTTCCGAGGCGTTCATAGTTACGAAGGAAAAC
GCCGTGCAGGAGCTGCTCAACATCATGATTTGTTATTTTGGTTCGGCATC
GGATCTGGAACGCAATATCCATGTCACCAAGAACAGTTACAGCGTGGCTC
GTGAGATAAACTTTATTTTTCCCAACTATATTCACGAGCCCCATCAAATG
TTCGACCACAACAACTTCTGCAACAGGCCGATGCTTAAGCCGCTGCTCGA
GGAGATCTACGACATAATGCAGAACACCGACTGCAGCCAGGAGAACTGGA
AGGTGCGTGTTTCCGATTACCTGGTGCGCAGCAATCCAAAGATGCCGGAA
ATCAGCAACCAGTGCCAGCAGCGACCGGATGTGGCTATCCAGGACAAATC
GCAGCAGACCACCATGACCTATGCTCCGAAGCCAAGTGCGCGGGCCGCGC
AGCCGGGAGTCAAGAAAACGCAGAGCAGCAGTGCACCCTTGTCCACCACA
TCCCCGCATTCCTCAATGCTGCTCTCATCGTCTTCCTGTGTCACCTGTGG
AGGCTTCGAAAGATCTCAGCCCGGTATTTCGGATCTGGACCTTAATAAGC
GCGTAGAACCTCATGACGAGGAGCCAGTCTGTGTGGACGAGGAGATTTTG
TGGAAGGAAGTTATTGTCTACGAGGAAATCCAACCGGAGGCTGAGGAGCA
GGAGTCCAAGGAGGACCTGCACGACCTGGAGGAGGAAGGCGTAGGCGAGT
CTGGGGGCTCAGATGCGGAGTCAGACCGAAGTGTTCATGAAGCTCCACCG
CCACCAGCTCAAGATGACGAGTCCGAAGAGGGTGACGCTGCTGCTGGGGA
GCCAGGCGAAACTGCTCCCGCTCCTGAAGTGGCTCCTCCTGCCCAAGAGG
CTACTGCTGCGCCTGAAGTCCCTGCAGTGGCTGAAGAACATCCTCACGCA
GCAGAAGCTCCCGCAGAGGAAGCTCCACCAGGGGAAGCAAGCTTTCTAGA
CCAT
BO16343.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:59:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15547-RA | 1173 | CG15547-PA | 1..1170 | 17..1186 | 5850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:59:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15547-RA | 1601 | CG15547-RA | 101..1274 | 13..1186 | 5870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30882119..30882927 | 1186..378 | 4045 | 100 | Minus |
3R | 32079331 | 3R | 30883128..30883403 | 288..13 | 1380 | 100 | Minus |
3R | 32079331 | 3R | 30882983..30883071 | 377..289 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:59:56 has no hits.
BO16343.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:56 Download gff for
BO16343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-RA | 1..1173 | 17..1190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:58 Download gff for
BO16343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-RA | 92..1277 | 5..1190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:18 Download gff for
BO16343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-RA | 111..1274 | 23..1188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:57 Download gff for
BO16343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-RA | 92..1277 | 5..1190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:28 Download gff for
BO16343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15547-RA | 111..1274 | 23..1188 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:28 Download gff for
BO16343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30882117..30882927 | 378..1188 | 99 | <- | Minus |
3R | 30882983..30883071 | 289..377 | 100 | <- | Minus |
3R | 30883128..30883393 | 23..288 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:18 Download gff for
BO16343.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26707839..26708649 | 378..1188 | 99 | <- | Minus |
arm_3R | 26708705..26708793 | 289..377 | 100 | <- | Minus |
arm_3R | 26708850..26709115 | 23..288 | 100 | | Minus |
BO16343.pep Sequence
Translation from 16 to 1204
> BO16343.pep
MFENSLFIIKPDYLHKRRPVLLKLLAEGFQIQGNRRIAFSPETAAEFYAD
YADEKGFMLEVILLSKGVSEAFIVTKENAVQELLNIMICYFGSASDLERN
IHVTKNSYSVAREINFIFPNYIHEPHQMFDHNNFCNRPMLKPLLEEIYDI
MQNTDCSQENWKVRVSDYLVRSNPKMPEISNQCQQRPDVAIQDKSQQTTM
TYAPKPSARAAQPGVKKTQSSSAPLSTTSPHSSMLLSSSSCVTCGGFERS
QPGISDLDLNKRVEPHDEEPVCVDEEILWKEVIVYEEIQPEAEEQESKED
LHDLEEEGVGESGGSDAESDRSVHEAPPPPAQDDESEEGDAAAGEPGETA
PAPEVAPPAQEATAAPEVPAVAEEHPHAAEAPAEEAPPGEASFLDH
BO16343.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15547-PA | 390 | CG15547-PA | 1..390 | 1..390 | 2041 | 100 | Plus |