Clone Sequence Records
BO16346.3prime Sequence
817 bp (710 high quality bases) assembled on 2006-10-13
> BO16346.3prime
ATGGTCTAGAAAGCTTGCATGCTTTCCCAGTTTTTGCCGATTTTTCTCCG
CCTCTTTCATCGGAGCTATATAGTGGCGCTTAAACATGTCATAGATGGAG
AAGTACACGGCACTCATCAGTCCTGCCTTGAGTAGAGTAGGCAACATTCC
CTTATAGAAGCCTCCGATTCCTTCCTCCCGAAACGTGGTGGTGATGCAGC
CCAGGATCGTAGGGCACTCGGGGTTGCGGCCAAAGGTCTTACGTTCCTGT
TTGAAGGCCATCAGCTGGATGCGCTTTTTAAGCAGGTCCGCCGGGTACAC
GATCATCTTGGCCAACACCCCTGACAGCGCCCCATTGAGAAACAGAAATG
CGCCGTGGATTTCCTGGCGCTGGTCGGGAGGCTTGGCCATCAAGACAGCC
GCGTTGAGGTACTTGTAGAAGAGAAAGTTTGCCCCTACCAGCGGAAACAC
CTGCACAAGCGTGAAGGGTAGTCCTCGGGAAAGTCCCATCCACCCCTCCA
TCTTATAGACCTTTCGAAGTCCGGTAAAAGTGTTCATCTGACTGCGGCGC
GAGGAGGGGTCTGCGGCCACCATCTGTGTTCTTACCACGTCGAACGGCTG
GGCGGCCACGGCTCCCAGACATCCGGCTATGCCGCCGCAGATGAAAAACA
TGAGAAAGGGTCGCTCCCTCCAGTAGTCAAACTGGTGGGCCATGGAGCGA
AGCTGTTCGTAGGACCAGAACTGTACCAGAGCGTACGAAATGCTCAGAAC
CTGGCCGGAGTTGTGACCACGGAACATACCGCGCATTCCCTCCTCGGCGT
ACACCGACTTGAAAGCG
BO16346.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:54:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2857-PA | 972 | CG2857-RA | 171..969 | 817..19 | 3945 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tpc2-RB | 2769 | CG2857-RB | 401..1199 | 817..19 | 3965 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24899536..24900334 | 19..817 | 3965 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:21:12 has no hits.
BO16346.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:23 Download gff for
BO16346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2857-PA | 171..972 | 18..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:20:14 Download gff for
BO16346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpc2-RB | 401..1199 | 19..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:28:17 Download gff for
BO16346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpc2-RB | 401..1199 | 19..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:28:17 Download gff for
BO16346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24899536..24900334 | 19..817 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:20:14 Download gff for
BO16346.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20787059..20787857 | 19..817 | 99 | | Plus |
BO16346.5prime Sequence
678 bp (585 high quality bases) assembled on 2006-10-13
> BO16346.5prime
TCGAAGTTATCAGTCGACATGCCCGAAAACTCGGTGGTAGTCCAGTTAAT
GCAGGCCGTCGGCGGCGGAATCGCCGGAGCTGCGACGCGGACCATAACCC
AGCCGCTGGACGTTCTGAAGATCCGATTCCAGATGCAAGTGGAGCCGGTG
ACAAACCATAAGGGGTCCAAATACCGTGGAGTCATCCACGCTTTCAAGTC
GGTGTACGCCGAGGAGGGAATGCGCGGTATGTTCCGTGGTCACAACTCCG
GCCAGGTTCTGAGCATTTCGTACGCTCTGGTACAGTTCTGGTCCTACGAA
CAGCTTCGCTCCATGGCCCACCAGTTTGACTACTGGAGGGAGCGACCCTT
TCTCATGTTTTTCATCTGCGGCGGCATAGCCGGATGTCTGGGAGCCGTGG
CCGCCCAGCCGTTCGACGTGGAAAGAACACAGATGGTGGCCGCAGACCCC
TCCTCGCGCCGCAGTCAGATGAACACTTTTACCGGACTTCGAAAGGTCTA
TAAGATGGAGGGGTGGATGGGACTTTCCCGAGGACTACCCTTCACGCTTG
TGCAGGTGTTTCCGCTGGTAGGGGCAAACTTTCTCTTCTACTAGTACCTC
AACGCGGCTGTCTTGATGGCCAAGCCTCCCGAACAGCGCCAGGAAATCCA
CGGCGCATTTCGTTTCCTCAATGGGGCG
BO16346.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:54:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2857-PA | 972 | CG2857-RA | 1..660 | 19..678 | 3150 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 08:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tpc2-RB | 2769 | CG2857-RB | 231..890 | 19..678 | 3210 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 08:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24899845..24900504 | 678..19 | 3210 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 08:40:18 has no hits.
BO16346.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:23 Download gff for
BO16346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2857-PA | 1..660 | 19..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 14:58:49 Download gff for
BO16346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpc2-RB | 225..890 | 11..678 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:35 Download gff for
BO16346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpc2-RB | 225..890 | 11..678 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:35 Download gff for
BO16346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24899845..24900510 | 11..678 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 14:58:49 Download gff for
BO16346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20787368..20788033 | 11..678 | 98 | | Minus |
BO16346.complete Sequence
1003 bp assembled on 2007-03-23
GenBank Submission: FJ633791
> BO16346.complete
GAAGTTATCAGTCGACATGCCCGAAAACTCGGTGGTAGTCCAGTTAATGC
AGGCCGTCGGCGGCGGAATCGCCGGAGCTGCGACGCGGACCATAACCCAG
CCGCTGGACGTTCTGAAGATCCGATTCCAGATGCAAGTGGAGCCGGTGAC
AAACCATAAGGGGTCCAAATACCGTGGAGTCATCCACGCTTTCAAGTCGG
TGTACGCCGAGGAGGGAATGCGCGGTATGTTCCGTGGTCACAACTCCGGC
CAGGTTCTGAGCATTTCGTACGCTCTGGTACAGTTCTGGTCCTACGAACA
GCTTCGCTCCATGGCCCACCAGTTTGACTACTGGAGGGAGCGACCCTTTC
TCATGTTTTTCATCTGCGGCGGCATAGCCGGATGTCTGGGAGCCGTGGCC
GCCCAGCCGTTCGACGTGGTAAGAACACAGATGGTGGCCGCAGACCCCTC
CTCGCGCCGCAGTCAGATGAACACTTTTACCGGACTTCGAAAGGTCTATA
AGATGGAGGGGTGGATGGGACTTTCCCGAGGACTACCCTTCACGCTTGTG
CAGGTGTTTCCGCTGGTAGGGGCAAACTTTCTCTTCTACAAGTACCTCAA
CGCGGCTGTCTTGATGGCCAAGCCTCCCGACCAGCGCCAGGAAATCCACG
GCGCATTTCTGTTTCTCAATGGGGCGCTGTCAGGGGTGTTGGCCAAGATG
ATCGTGTACCCGGCGGACCTGCTTAAAAAGCGCATCCAGCTGATGGCCTT
CAAACAGGAACGTAAGACCTTTGGCCGCAACCCCGAGTGCCCTACGATCC
TGGGCTGCATCACCACCACGTTTCGGGAGGAAGGAATCGGAGGCTTCTAT
AAGGGAATGTTGCCTACTCTACTCAAGGCAGGACTGATGAGTGCCGTGTA
CTTCTCCATCTATGACATGTTTAAGCGCCACTATATAGCTCCGATGAAAG
AGGCGGAGAAAAATCGGCAAAAACTGGGAAAGCATGCAAGCTTTCTAGAC
CAT
BO16346.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tpc2-RB | 972 | CG2857-PB | 1..969 | 17..985 | 4815 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:06:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tpc2-RB | 2769 | CG2857-RB | 231..1199 | 17..985 | 4815 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:06:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24899536..24900504 | 985..17 | 4815 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:06:49 has no hits.
BO16346.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:05 Download gff for
BO16346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2857-RA | 1..972 | 17..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:04 Download gff for
BO16346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2857-RA | 159..1133 | 9..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:19 Download gff for
BO16346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpc2-RB | 231..1199 | 17..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:05 Download gff for
BO16346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2857-RA | 159..1133 | 9..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:05 Download gff for
BO16346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpc2-RB | 231..1199 | 17..987 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:05 Download gff for
BO16346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24899534..24900504 | 17..987 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:19 Download gff for
BO16346.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20787057..20788027 | 17..987 | 99 | | Minus |
BO16346.pep Sequence
Translation from 16 to 1003
> BO16346.pep
MPENSVVVQLMQAVGGGIAGAATRTITQPLDVLKIRFQMQVEPVTNHKGS
KYRGVIHAFKSVYAEEGMRGMFRGHNSGQVLSISYALVQFWSYEQLRSMA
HQFDYWRERPFLMFFICGGIAGCLGAVAAQPFDVVRTQMVAADPSSRRSQ
MNTFTGLRKVYKMEGWMGLSRGLPFTLVQVFPLVGANFLFYKYLNAAVLM
AKPPDQRQEIHGAFLFLNGALSGVLAKMIVYPADLLKKRIQLMAFKQERK
TFGRNPECPTILGCITTTFREEGIGGFYKGMLPTLLKAGLMSAVYFSIYD
MFKRHYIAPMKEAEKNRQKLGKHASFLDH
BO16346.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tpc2-PB | 323 | CG2857-PB | 1..323 | 1..323 | 1685 | 100 | Plus |
| Tpc1-PA | 332 | CG6608-PA | 22..329 | 3..304 | 630 | 41.6 | Plus |
| Tpc1-PB | 332 | CG6608-PB | 22..329 | 3..304 | 630 | 41.6 | Plus |
| att-ORFA-PD | 364 | CG4241-PD | 70..364 | 4..315 | 299 | 28.8 | Plus |
| att-ORFA-PE | 290 | CG4241-PE | 2..290 | 14..315 | 289 | 29.1 | Plus |
