Clone Sequence Records
BO16352.3prime Sequence
918 bp (833 high quality bases) assembled on 2006-10-13
> BO16352.3prime
ATGGTCTAGAAAGCTTGCGTCGCCGTCACCGTGGCTTTGCAATTGTCGTG
TGTCACAAGATCCACTTTGATCACCGTCATTCCGCAATCTATGCGATCTG
GTTCGGCTTGCAGGTAGACAGACTTCTATGTCCTGGGGCTCGCTGGGGCA
GGCGGCGGTAAGTAGATCCACGGAGTAATCATCCCGGACGTGCAGGGTGT
CGCCAAGCTGACAAAGAATGCCCCGGAACTCGGGGTAGGCCTGGCAGCAG
TCATCGGGAATAGAGATTGACAGCCGCAGCGACATCACGTTTCCGGGAGC
GAAGGGATAGTCAAGGAGTCTGCGACTGGTGTCTCGCTTTCCCAGACCCA
CGTGCGAGACCACGACTGGGGAGCAGTTGTACTTGCGAGCCAACTCCACT
GTCTCGGCTGCACTGCTGACACCCTTAGGCAACACGCGGAGCTCCCTTAG
GTGCCGAGCCAGAAGGATTAAATAGGCGGCGTGCAGTTCCAGAGGTGTGC
GGACGGCACCCTCACATCCTGCGTACTGTATCAACGAGCACAGATCCCGA
CGCATGTCCAACAGCGCACCATAAATCATTTTCTGGGGCGGCGTGAATCG
CCCCGAGCTGGGCCAGCATCTGGCCAGTCCCCCCTCGTAGCCTCCGTACT
GACATCCAGCGTCCATCTGCCACAGCCCATTGCCATCCAATCCGCACGAA
GTTTTTGTCACGTCGGGACGAGCGTGGCGCANACGGCACTTGTAGTCAAA
TGAAGCGGCCAGCTCCTGAGGAATCTGATGATGCTGTGCGATTACCTCCG
CCATGGAGTCCGCAGCGGTGGCGTTAGCCCGACGCAGGGCTCTCAGCTCC
CGCGAGGTCTTGACGGTGCGTGTGTACTGGAGGATGTATCGGGGATTGCC
CATAGGAATCTTGGCTTC
BO16352.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:55:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32454-PA | 1605 | CG32454-RA | 703..1602 | 918..19 | 4481 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:23:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32454-RA | 1835 | CG32454-RA | 746..1645 | 918..19 | 4489 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:23:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22730511..22731410 | 918..19 | 4489 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:23:15 has no hits.
BO16352.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:31 Download gff for
BO16352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-PA | 703..1605 | 16..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:12:56 Download gff for
BO16352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-RA | 746..1650 | 13..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:53:14 Download gff for
BO16352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-RA | 746..1650 | 13..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:14 Download gff for
BO16352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22730511..22731415 | 13..918 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:12:56 Download gff for
BO16352.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22723611..22724515 | 13..918 | 99 | | Minus |
BO16352.5prime Sequence
944 bp (772 high quality bases) assembled on 2006-10-13
> BO16352.5prime
GAAGTTATCAGTCGACATGCTGCGGTTTCTTCGAAATTTTAAGTATTATG
CCTGGCAAGAGGTGCGTCGCGGTTGTTCCGTAGTGGCCCCACCGGATAGG
AGTGATGTGCTTCTGGTGCTGCCAACGGTCTGGCCCTCCGAGCTTACCAA
GAGGATCCGCCCGCTCTCAGTGCCCGACCTGATCGAGAAGTTCTCCTGCG
ATGCCCCTGGCGGACAGTTCGCCACAATGTCCGAGTACCTGCGCAGCGAT
CCACGGCCCGACGGAGTTCTCCTGCCGGATGAAATTGATCTGCACCGAAA
AATGTCCCTGGACGACCTTAATTCTTATATGCACGCGAAGGACGCATTCA
AAGAGCCGCACAGGAAAAACCGCATATTTTCGCACGTTCTTGTGGTGGCC
GGAGCTGACTCAGCTCGGAGTTACCCCTTTCGGCAGAGGCCTGACTTCCT
CTATCTTTGCGACTGCTTGAGACCAGGGGCAGCATTGGTTCTCACCCGCA
GCCGAAAGCGAAATACTGGCGCGTTGCTCTTTCTTTCCCAGGATGTGGAC
TCCCAGCTGTCCACCATTTTTAGCCATATGCACTACGTGGACGACGTTCT
GCCCCTCGCAATGCTTAAGAAAAGTTTACTCTGGCTGTTAAGGGATCACT
CGCCCGAGCTATGGCACTTCTACGACCCATCGAGTCCTGTCAGTTGTATA
GTGCAAGAGGTGGCTAATGAAGCCAAGATTCCTATGGGCAATCCCCGATA
CATCCTCCAGTACACACGCACCGTCAAGACCTCGCGGGAGCTGAGAGCCC
TGCGTCGGGCTAACGCCACCGCTGCGGACTCCATGGCGGAGGTAATCGCA
CAGCATCATCAGATTCCTCAGGAGCTGGCCGCTTCATTTGACTACNAGTG
CCGTTTGCGCCACGCTCGTCCCGACGTGACAAAAACTTCGTTGC
BO16352.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:55:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32454-PA | 1605 | CG32454-RA | 1..925 | 17..941 | 4606 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32454-RA | 1835 | CG32454-RA | 44..968 | 17..941 | 4614 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22729809..22730733 | 17..941 | 4614 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:23:55 has no hits.
BO16352.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:32 Download gff for
BO16352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-PA | 1..927 | 17..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:21:04 Download gff for
BO16352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-RA | 38..970 | 8..944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:31 Download gff for
BO16352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-RA | 38..970 | 8..944 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:31 Download gff for
BO16352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22729803..22730735 | 8..944 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:21:04 Download gff for
BO16352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22722903..22723835 | 8..944 | 99 | | Plus |
BO16352.complete Sequence
1636 bp assembled on 2007-03-23
GenBank Submission: FJ633793
> BO16352.complete
GAAGTTATCAGTCGACATGCTGCGGTTTCTTCGAAATTTTAAGTATTATG
CCTGGCAAGAGGTGCGTCGCGGTTGTTCCGTAGTGGCCCCACCGGATAGG
AGTGATGTGCTTCTGGTGCTGCCAACGGTCTGGCCCTCCGAGCTTACCAA
GAGGATCCGCCCGCTCTCAGTGCCCGACCTGATCGAGAAGTTCTCCTGCG
ATGCCCCTGGCGGACAGTTCGCCACAATGTCCGAGTACCTGCGCAGCGAT
CCACGGCCCGACGGAGTTCTCCTGCCGGATGAAATTGATCTGCACCGAAA
AATGTCCCTGGACGACCTTAATTCTTATATGCACGCGAAGGACGCATTCA
AAGAGCCGCACAGGAAAAACCGCATATTTTCGCACGTTCTTGTGGTGGCC
GGAGCTGACTCAGCTCGGAGTTACCCCTTTCGGCAGAGGCCTGACTTCCT
CTATCTTTGCGACTGCTTGAGACCAGGGGCAGCATTGGTTCTCACCCGCA
GCCGAAAGCGAAATACTGGCGCGTTGCTCTTTCTTTCCCAGGATGTGGAC
TCCCAGCTGTCCACCATTTTTAGCCATATGCACTACGTGGACGACGTTCT
GCCCCTCGCAATGCTTAAGAAAAGTTTACTCTGGCTGTTAAGGGATCACT
CGCCCGAGCTATGGCACTTCTACGACCCATCGAGTCCTGTCAGTTGTATA
GTGCAAGAGGTGGCTAATGAAGCCAAGATTCCTATGGGCAATCCCCGATA
CATCCTCCAGTACACACGCACCGTCAAGACCTCGCGGGAGCTGAGAGCCC
TGCGTCGGGCTAACGCCACCGCTGCGGACTCCATGGCGGAGGTAATCGCA
CAGCATCATCAGATTCCTCAGGAGCTGGCCGCTTCATTTGACTACAAGTG
CCGTTTGCGCCACGCTCGTCCCGACGTGACAAAAACTTCGTGCGGATTGG
ATGGCAATGGGCTGTGGCAGATGGACGCTGGATGTCAGTACGGAGGCTAC
GAGGGGGGACTGGCCAGATGCTGGCCCAGCTCGGGGCGATTCACGCCGCC
CCAGAAAATGATTTATGGTGCGCTGTTGGACATGCGTCGGGATCTGTGCT
CGTTGATACAGTACGCAGGATGTGAGGGTGCCGTCCGCACACCTCTGGAA
CTGCACGCCGCCTATTTAATCCTTCTGGCTCGGCACCTAAGGGAGCTCCG
CGTGTTGCCTAAGGGTGTCAGCAGTGCAGCCGAGACAGTGGAGTTGGCTC
GCAAGTACAACTGCTCCCCAGTCGTGGTCTCGCACGTGGGTCTGGGAAAG
CGAGACACCAGTCGCAGACTCCTTGACTATCCCTTCGCTCCCGGAAACGT
GATGTCGCTGCGGCTGTCAATCTCTATTCCCGATGACTGCTGCCAGGCCT
ACCCCGAGTTCCGGGGCATTCTTTGTCAGCTTGGCGACACCCTGCACGTC
CGGGATGATTACTCCGTGGATCTACTTACCGCCGCCTGCCCCAGCGAGCC
CCAGGACATAGAAGTCTGTCTACCTGCAAGCCGAACCAGATCGCATAGAT
TGCGGAATGACGGTGATCAAAGTGGATCTTGTGACACACGACAATTGCAA
AGCCACGGTGACGGCGACGCAAGCTTTCTAGACCAT
BO16352.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32454-RA | 1605 | CG32454-PA | 1..1602 | 17..1618 | 8010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32454-RA | 1835 | CG32454-RA | 44..1645 | 17..1618 | 8010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22729809..22731410 | 17..1618 | 8010 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:06:52 has no hits.
BO16352.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:02 Download gff for
BO16352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-RA | 1..1605 | 17..1621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:00 Download gff for
BO16352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-RA | 38..1648 | 8..1621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:01 Download gff for
BO16352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-RA | 44..1645 | 17..1620 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:03 Download gff for
BO16352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-RA | 38..1648 | 8..1621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:29 Download gff for
BO16352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32454-RA | 44..1645 | 17..1620 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:29 Download gff for
BO16352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22729809..22731410 | 17..1620 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:01 Download gff for
BO16352.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22722909..22724510 | 17..1620 | 99 | | Plus |
BO16352.pep Sequence
Translation from 16 to 1636
> BO16352.pep
MLRFLRNFKYYAWQEVRRGCSVVAPPDRSDVLLVLPTVWPSELTKRIRPL
SVPDLIEKFSCDAPGGQFATMSEYLRSDPRPDGVLLPDEIDLHRKMSLDD
LNSYMHAKDAFKEPHRKNRIFSHVLVVAGADSARSYPFRQRPDFLYLCDC
LRPGAALVLTRSRKRNTGALLFLSQDVDSQLSTIFSHMHYVDDVLPLAML
KKSLLWLLRDHSPELWHFYDPSSPVSCIVQEVANEAKIPMGNPRYILQYT
RTVKTSRELRALRRANATAADSMAEVIAQHHQIPQELAASFDYKCRLRHA
RPDVTKTSCGLDGNGLWQMDAGCQYGGYEGGLARCWPSSGRFTPPQKMIY
GALLDMRRDLCSLIQYAGCEGAVRTPLELHAAYLILLARHLRELRVLPKG
VSSAAETVELARKYNCSPVVVSHVGLGKRDTSRRLLDYPFAPGNVMSLRL
SISIPDDCCQAYPEFRGILCQLGDTLHVRDDYSVDLLTAACPSEPQDIEV
CLPASRTRSHRLRNDGDQSGSCDTRQLQSHGDGDASFLDH
BO16352.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32454-PA | 534 | CG32454-PA | 1..534 | 1..534 | 2835 | 100 | Plus |
| CG9581-PA | 545 | CG9581-PA | 92..530 | 89..501 | 365 | 28.1 | Plus |
