Clone Sequence Records
BO16358.3prime Sequence
719 bp (718 high quality bases) assembled on 2006-10-13
> BO16358.3prime
ATGGTCTAGAAAGCTTGCCATCTTCCTAATCTCAATCAGTAGGGCGCTGT
ATAGAGATTGACAGAACTCCTCGAGACCCGCGTACGCGTTCCTCTCGATA
AAGGTCTTGACCACTGCCCACACGGACTTGAGAAACTGGATCTCGGCAAA
GACCAAAACGTCCGTGTGCTCTTCCACGGTGGCCTTCAGGCAGAAGTGCA
TCAGGACGACGAAGGTGTCCGCGTAGGGGATATCTGCGTTAACGCTCTGC
ACATCGATCGAGTACAGTTGGCCGGGTTGGCTGCACTCGCGCATGGTCTG
TGTCTCGGTAATTTTGGCAGTTTTGGGACCAACGTTCGCCTGAAGTGCCA
CAGTCATTGAGACAGTGCGCTGATTCTGGCCGCCGGCATTTCGCGCCCAG
ACGCCCATATTCAGATCGGTGGACTTGCGCCGCTCATGGAAGCTCTGCAG
GAACGGCGAGGCAGAGAAGAGCATGTTGAACAGTGCGTCCACCCGCACCA
TCAGCCGCTCCTGCAGAAGCTTGCGCCCCTCGTGCGACGCACTGCACCGG
GCGGTTAGGTCCTCTGGCCTTCTGTACCCTGCGGCCGTTTTTAATTGTAG
TGTTTTCGATGGAGTACTTATTAGTGTGCTCCGGTGGCTCGGAGTTTTTT
TTCCGCGCTTACCGGATGTTTGCGGTATATTTTCTCTGCTGACCAGCGCC
GTAACTGCCACCGAATTGC
BO16358.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30284-PA | 1062 | CG30284-RA | 359..1059 | 719..19 | 3505 | 100 | Minus |
CG30284-PB | 978 | CG30284-RB | 415..975 | 579..19 | 2805 | 100 | Minus |
CG30284-PB | 978 | CG30284-RB | 359..416 | 719..662 | 290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:00:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30284-RA | 1180 | CG30284-RA | 435..1135 | 719..19 | 3505 | 100 | Minus |
CG30284-RB | 1083 | CG30284-RB | 478..1038 | 579..19 | 2805 | 100 | Minus |
CG30284-RB | 1083 | CG30284-RB | 422..479 | 719..662 | 290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21650865..21651565 | 19..719 | 3505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:00:48 has no hits.
BO16358.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:36 Download gff for
BO16358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-PA | 359..1062 | 18..719 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:51 Download gff for
BO16358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-RA | 435..1140 | 13..719 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:39:49 Download gff for
BO16358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-RA | 435..1140 | 13..719 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:39:49 Download gff for
BO16358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21650860..21651565 | 13..719 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:51 Download gff for
BO16358.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17538365..17539070 | 13..719 | 99 | | Plus |
BO16358.5prime Sequence
881 bp (810 high quality bases) assembled on 2006-10-13
> BO16358.5prime
GAAGTTATCAGTCGACATGAAGTCGATTCAGGCCCGGTTGAACCACCGAT
TCCGAAAAACTTTGGCGATGGACAAGCCGTCTAGCAGCAATAGCAATCGA
ATGAGCAGGAGCACTTCGAACTGCAGGAGCCCGGCCATAATACGCAGTCC
GCTGAACTCTGAGGAATTTCAGGACTCGGCAACGGCAGCCGCCACACAAC
AACGGCTTTTCTGGAGCGGCCAGCGGGCCTCGACGGCGGGCAGGGATGAT
AAAACCAAGCCTGATTCGACTGCCGCCGGAAAAAAGAAGCCACCTACGAC
GACAAGGCAGTCAAATTTTACCCAGACCGAACGAAGACGGACACATCGCA
AGCTGAGTCCGCGGAGCACGCGTTGCAATTCGGTGGCAGTTACGGCGCTG
GTCAGCAGAGAAAATATACCGCAAACATCCGGTAAGCGCGGAAAAAAAAC
TCCGAGCCACCGGAGCACACTAATAAGTACTCCATCGAAAACACTACAAT
TAAAAACGGCCGCAGGGTACAGAAGGCCAGAGGACCTAACCGCCCGGTGC
AGTGCGTCGCACGAGGGGCGCAAGCTTCTGCAGGAGCGGCTGATGGTGCG
GGTGGACGCACTGTTCAACATGCTCTTCTCTGCCTCGCCGTTCCTGCAGA
GCTTCCATGAGCGGCGCAAGTCCACCGATCTGAATATGGGCGTCTGGGCG
CGAAATGCCGGCGGCCAGAATCAGCGCACTGTCTCAATGACTGTGGCACT
TCAGGCGAACGTTGGTCCCAAAACTGCCAAAATTACCGAGACACAGACCA
TGCGCGAGTGCAGCCAACCCGGCCAACTGTACTCGATCGATGTGCAGAGC
GTTAACGCAGATATCCCCTACGCGGACACCT
BO16358.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30284-PA | 1062 | CG30284-RA | 1..865 | 17..881 | 4325 | 100 | Plus |
CG30284-PB | 978 | CG30284-RB | 1..416 | 17..432 | 2080 | 100 | Plus |
CG30284-PB | 978 | CG30284-RB | 415..781 | 515..881 | 1835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30284-RA | 1180 | CG30284-RA | 77..941 | 17..881 | 4325 | 100 | Plus |
CG30284-RB | 1083 | CG30284-RB | 64..479 | 17..432 | 2080 | 100 | Plus |
CG30284-RB | 1083 | CG30284-RB | 478..844 | 515..881 | 1835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21651059..21651923 | 881..17 | 4325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:38:19 has no hits.
BO16358.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:37 Download gff for
BO16358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-PA | 1..865 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:43 Download gff for
BO16358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-RA | 77..941 | 17..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:08 Download gff for
BO16358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-RA | 77..941 | 17..881 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:08 Download gff for
BO16358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21651059..21651923 | 17..881 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:43 Download gff for
BO16358.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17538564..17539428 | 17..881 | 100 | | Minus |
BO16358.complete Sequence
1093 bp assembled on 2006-10-11
GenBank Submission: FJ633794
> BO16358.complete
GAAGTTATCAGTCGACATGAAGTCGATTCAGGCCCGGTTGAACCACCGAT
TCCGAAAAACTTTGGCGATGGACAAGCCGTCTAGCAGCAATAGCAATCGA
ATGAGCAGGAGCACTTCGAACTGCAGGAGCCCGGCCATAATACGCAGTCC
GCTGAACTCTGAGGAATTTCAGGACTCGGCAACGGCAGCCGCCACACAAC
AACGGCTTTTCTGGAGCGGCCAGCGGGCCTCGACGGCGGGCAGGGATGAT
AAAACCAAGCCTGATTCGACTGCCGCCGGAAAAAAGAAGCCACCTACGAC
GACAAGGCAGTCAAATTTTACCCAGACCGAACGAAGACGGACACATCGCA
AGCTGAGTCCGCGGAGCACGCGTTGCAATTCGGTGGCAGTTACGGCGCTG
GTCAGCAGAGAAAATATACCGCAAACATCCGGTAAGCGCGGAAAAAAAAC
TCCGAGCCACCGGAGCACACTAATAAGTACTCCATCGAAAACACTACAAT
TAAAAACGGCCGCAGGGTACAGAAGGCCAGAGGACCTAACCGCCCGGTGC
AGTGCGTCGCACGAGGGGCGCAAGCTTCTGCAGGAGCGGCTGATGGTGCG
GGTGGACGCACTGTTCAACATGCTCTTCTCTGCCTCGCCGTTCCTGCAGA
GCTTCCATGAGCGGCGCAAGTCCACCGATCTGAATATGGGCGTCTGGGCG
CGAAATGCCGGCGGCCAGAATCAGCGCACTGTCTCAATGACTGTGGCACT
TCAGGCGAACGTTGGTCCCAAAACTGCCAAAATTACCGAGACACAGACCA
TGCGCGAGTGCAGCCAACCCGGCCAACTGTACTCGATCGATGTGCAGAGC
GTTAACGCAGATATCCCCTACGCGGACACCTTCGTCGTCCTGATGCACTT
CTGCCTGAAGGCCACCGTGGAAGAGCACACGGACGTTTTGGTCTTTGCCG
AGATCCAGTTTCTCAAGTCCGTGTGGGCAGTGGTCAAGACCTTTATCGAG
AGGAACGCGTACGCGGGTCTCGAGGAGTTCTGTCAATCTCTATACAGCGC
CCTACTGATTGAGATTAGGAAGATGGCAAGCTTTCTAGACCAT
BO16358.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:09:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30284-RA | 1062 | CG30284-PA | 1..1059 | 17..1075 | 5295 | 100 | Plus |
CG30284-RB | 978 | CG30284-PB | 415..975 | 515..1075 | 2805 | 100 | Plus |
CG30284-RB | 978 | CG30284-PB | 1..416 | 17..432 | 2080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30284-RA | 1180 | CG30284-RA | 77..1135 | 17..1075 | 5295 | 100 | Plus |
CG30284-RB | 1083 | CG30284-RB | 478..1038 | 515..1075 | 2805 | 100 | Plus |
CG30284-RB | 1083 | CG30284-RB | 64..479 | 17..432 | 2080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21650865..21651923 | 1075..17 | 5295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:09:48 has no hits.
BO16358.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:29:01 Download gff for
BO16358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-RA | 1..1062 | 17..1076 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:48:00 Download gff for
BO16358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-RA | 77..1140 | 17..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:17 Download gff for
BO16358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-RA | 77..1135 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:29:01 Download gff for
BO16358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-RA | 77..1140 | 17..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:50 Download gff for
BO16358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30284-RA | 77..1135 | 17..1077 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:50 Download gff for
BO16358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21650863..21651923 | 17..1077 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:17 Download gff for
BO16358.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17538368..17539428 | 17..1077 | 99 | | Minus |
BO16358.pep Sequence
Translation from 16 to 1093
> BO16358.pep
MKSIQARLNHRFRKTLAMDKPSSSNSNRMSRSTSNCRSPAIIRSPLNSEE
FQDSATAAATQQRLFWSGQRASTAGRDDKTKPDSTAAGKKKPPTTTRQSN
FTQTERRRTHRKLSPRSTRCNSVAVTALVSRENIPQTSGKRGKKTPSHRS
TLISTPSKTLQLKTAAGYRRPEDLTARCSASHEGRKLLQERLMVRVDALF
NMLFSASPFLQSFHERRKSTDLNMGVWARNAGGQNQRTVSMTVALQANVG
PKTAKITETQTMRECSQPGQLYSIDVQSVNADIPYADTFVVLMHFCLKAT
VEEHTDVLVFAEIQFLKSVWAVVKTFIERNAYAGLEEFCQSLYSALLIEI
RKMASFLDH
BO16358.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30284-PA | 353 | CG30284-PA | 1..353 | 1..353 | 1794 | 100 | Plus |
CG30284-PB | 325 | CG30284-PB | 1..325 | 1..353 | 1616 | 92.1 | Plus |
CG34394-PG | 804 | CG34394-PG | 126..469 | 19..349 | 525 | 35.4 | Plus |
CG34394-PA | 1138 | CG34394-PA | 561..904 | 19..349 | 525 | 35.4 | Plus |
CG34394-PH | 1206 | CG34394-PH | 537..880 | 19..349 | 525 | 35.4 | Plus |