Clone Sequence Records
BO16359.3prime Sequence
922 bp (787 high quality bases) assembled on 2006-10-13
> BO16359.3prime
ATGGTCTAGAAAGCTTGCCCGGCGATTGATCAGCCCGTTAGGAGGCGCCT
GTTGGCTAGCCGTATGCATCAGCTCTAGCTCGACCAGCAGTGGGAAGTGA
TCAGAGGGTATATGCGGATGTGGGCATCCAACAACCTTATTCTCGCGCAG
CCAATCATTGGAGACAGGACCCAGCAGGCCCAGCGGCACCATGCCCGTCT
TCGTGTAGAAAATGTAGTCGATGATGCCCTTAAAATCGAACGTATAGTTG
GTGTGCGGCATTATGTCCTCGTTGTAGGCGGAGGCTAGCTTGAACGAGTG
CGTAAACTCGTTGGTGTCGTTCGAGAGCAGCCGCTGCAGGCAGGACTTGT
AGCCCATGTCCTTGAAGTCCAAATGATCCATGGAAACGCGGCCCTTGCCG
AGAAACTCCACAACGCCTGAATCGGGTAGCGAGTTGAAGTCACCGCACAG
CAGCAGCTGGACAGCATTGGAGTCGTTCTTGTGACCAGGTCGGAAACTGT
GGCTCGCCTCGTCGATGATCGTCTTCAACTCATTGCTAAGCATCATCGTC
TGGATGAGCTTGACGTCGCAGAACTCAGGGTCCCAGTGTATGTGCGCCGT
GCAGACGAGCAGCGGCTGCGAGATCTGCGTCACCTCGGACATCGGCTCCC
ATGCGTTCTCCTTCACCTTGAGCAGTGCGGCCAGACCGATGTTATCCTTA
GGCATTACGCGGTTCAGCATGTTGTCGGAGCCCTCGGCATTGGCCATTGC
CAGCTGATTGAACTCGATCAATGATTCCTTGATCAGCGTAAACTTGGACG
CCCTGAAGAATATCGCACAGCCATCGACGTACTTCCTCTCCAGCTCGGAC
ATAGTCTTAGCACGCGACTTCGGTGAGAAGATTCCCTCGTACCCATCGTT
CTTGAGTTCCGGCAGGAAGAAA
BO16359.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:56:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31137-PA | 1659 | twin-RA | 754..1656 | 921..19 | 4515 | 100 | Minus |
| CG31137-PB | 1638 | twin-RB | 733..1635 | 921..19 | 4515 | 100 | Minus |
| CG31137-PE | 1659 | twin-RE | 754..1656 | 921..19 | 4515 | 100 | Minus |
| CG31137-PC | 1704 | twin-RC | 799..1701 | 921..19 | 4515 | 100 | Minus |
| CG31137-PD | 1077 | twin-RD | 172..1074 | 921..19 | 4515 | 100 | Minus |
| CG31137-PF | 1659 | twin-RF | 754..1656 | 921..19 | 4515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:38:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twin-RF | 2690 | CG31137-RF | 940..1842 | 921..19 | 4515 | 100 | Minus |
| twin-RD | 2950 | CG31137-RD | 1200..2102 | 921..19 | 4515 | 100 | Minus |
| twin-RC | 2586 | CG31137-RC | 836..1738 | 921..19 | 4515 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24198439..24199213 | 19..793 | 3875 | 100 | Plus |
| 3R | 32079331 | 3R | 24199273..24199402 | 792..921 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:38:45 has no hits.
BO16359.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:37 Download gff for
BO16359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31137-PF | 756..1659 | 18..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:24:30 Download gff for
BO16359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RC | 838..1744 | 15..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:42:43 Download gff for
BO16359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RC | 838..1744 | 15..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:42:43 Download gff for
BO16359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24198433..24199213 | 15..793 | 99 | <- | Plus |
| 3R | 24199275..24199400 | 794..919 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:24:30 Download gff for
BO16359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20024155..20024935 | 15..793 | 99 | <- | Plus |
| arm_3R | 20024997..20025122 | 794..919 | 100 | | Plus |
BO16359.5prime Sequence
942 bp (810 high quality bases) assembled on 2006-10-13
> BO16359.5prime
GAAGTTATCAGTCGACATGTCTCGTAACAAAGACAAATACGACAGCGCCA
ATCGGCGGCAGCAGATCTTTCTGTCGCAGGAGGACATAGCTGCGGGCAAG
AAGACGAACTGGAGTGGCCTAGAGATTACTGGCTGCGTCCGCAATATCAG
CCCGTCGCTGTGGGAATTTGAGCATCTAACCGCCCTCTACCTGAACGACA
ACCAGCTGCTGCGATTGCCCGCAGACGTTGGCATGCTGACCAGCCTCCGA
ACTTTGGACCTGTCCAGCAATAAGCTAAGAAGTCTTCCCGCAGAGCTCGG
CGAGCTCATCCAGTTGCGGGAGCTGTTGCTGAACAACAACTTTCTGCGCG
TACTGCCTTACGAGATCGGCAAGCTGTTCCACCTCGTCATACTCGGCCTC
ATGGGCAATCCGCTGCAAAAGGAGTTCATGAACATCTACAACGAACCGAA
CGGCACGCAGAAACTGCTCACCTACATGCTGGACAACTTGTCATTTACCG
TGAATCCACCGCCCCAGAGGCCCTGGCTGCCACTGGCCAAGCCCAACAAA
ACGCGACCAGCCTGCATTTTTACGGTCATGTGCTATAATGTGCTCTGCGA
CAAGTACGCGACGCGACAAATGTACGGATACTGTCCGTCGTGGGCGCTAT
GCTGGGAGTACCGAAAAAAGTCGATTATCGACGAGATACGGCACTATGCA
GCGGACATTATCAGTCTGCAGGAGATCGAAACGGAGCAATTCTATCACTT
CTTCCTGCCGGAACTCAAGAACGATGGGTACGAGGGAATCTTCTCACCGA
AGTCGCGTGCTAAGACTATGTCCGAGCTGGAGAGGAAGTACGTCGATGGC
TGTGCGATATTCTTCAGGGCGTCCAAGTTTACGCTGATCAAGGAATCATT
GATCCAGTTCAATCAGCTGGCAATGGCCAATGGCGAGGGCTC
BO16359.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:56:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31137-PA | 1659 | twin-RA | 22..947 | 17..942 | 4580 | 99.7 | Plus |
| CG31137-PB | 1638 | twin-RB | 1..926 | 17..942 | 4580 | 99.7 | Plus |
| CG31137-PE | 1659 | twin-RE | 22..947 | 17..942 | 4580 | 99.7 | Plus |
| CG31137-PC | 1704 | twin-RC | 67..992 | 17..942 | 4580 | 99.7 | Plus |
| CG31137-PF | 1659 | twin-RF | 22..947 | 17..942 | 4580 | 99.7 | Plus |
| CG31137-PD | 1077 | twin-RD | 1..365 | 578..942 | 1775 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twin-RF | 2690 | CG31137-RF | 208..1133 | 17..942 | 4600 | 99.8 | Plus |
| twin-RC | 2586 | CG31137-RC | 104..1029 | 17..942 | 4600 | 99.8 | Plus |
| twin-RE | 3548 | CG31137-RE | 368..1293 | 17..942 | 4600 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24199273..24199587 | 878..564 | 1575 | 100 | Minus |
| 3R | 32079331 | 3R | 24219964..24220157 | 319..126 | 955 | 99.5 | Minus |
| 3R | 32079331 | 3R | 24219600..24219776 | 494..318 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 24220214..24220329 | 132..17 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 24199882..24199951 | 564..495 | 350 | 100 | Minus |
| 3R | 32079331 | 3R | 24199148..24199213 | 942..877 | 300 | 97 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:28:41 has no hits.
BO16359.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:38 Download gff for
BO16359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31137-PF | 22..947 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:21:20 Download gff for
BO16359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 368..1293 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:14 Download gff for
BO16359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 368..1293 | 17..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:14 Download gff for
BO16359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24199883..24199951 | 495..563 | 100 | <- | Minus |
| 3R | 24219600..24219775 | 319..494 | 100 | <- | Minus |
| 3R | 24219965..24220151 | 132..318 | 100 | <- | Minus |
| 3R | 24220215..24220329 | 17..131 | 100 | | Minus |
| 3R | 24199148..24199213 | 877..942 | 96 | <- | Minus |
| 3R | 24199275..24199587 | 564..876 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:21:20 Download gff for
BO16359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20045687..20045873 | 132..318 | 100 | <- | Minus |
| arm_3R | 20045937..20046051 | 17..131 | 100 | | Minus |
| arm_3R | 20024870..20024935 | 877..942 | 96 | <- | Minus |
| arm_3R | 20024997..20025309 | 564..876 | 100 | <- | Minus |
| arm_3R | 20025605..20025673 | 495..563 | 100 | <- | Minus |
| arm_3R | 20045322..20045497 | 319..494 | 100 | <- | Minus |
BO16359.complete Sequence
1669 bp assembled on 2007-03-23
GenBank Submission: FJ633795
> BO16359.complete
GAAGTTATCAGTCGACATGTCTCGTAACAAAGACAAATACGACAGCGCCA
ATCGGCGGCAGCAGATCTTTCTGTCGCAGGAGGACATAGCTGCGGGCAAG
AAGACGAACTGGAGTGGCCTAGAGATTACTGGCTGCGTCCGCAATATCAG
CCCGTCGCTGTGGGAATTTGAGCATCTAACCGCCCTCTACCTGAACGACA
ACCAGCTGCTGCGATTGCCCGCAGACGTTGGCATGCTGACCAGCCTCCGA
ACTTTGGACCTGTCCAGCAATAAGCTAAGAAGTCTTCCCGCAGAGCTCGG
CGAGCTCATCCAGTTGCGGGAGCTGTTGCTGAACAACAACTTTCTGCGCG
TACTGCCTTACGAGATCGGCAAGCTGTTCCACCTCGTCATACTCGGCCTC
ATGGGCAATCCGCTGCAAAAGGAGTTCATGAACATCTACAACGAACCGAA
CGGCACGCAGAAACTGCTCACCTACATGCTGGACAACTTGTCATTTACCG
TGAATCCACCGCCCCAGAGGCCCTGGCTGCCACTGGCCAAGCCCAACAAA
ACGCGACCAGCCTGCATTTTTACGGTCATGTGCTATAATGTGCTCTGCGA
CAAGTACGCGACGCGACAAATGTACGGATACTGTCCGTCGTGGGCGCTAT
GCTGGGAGTACCGAAAAAAGTCGATTATCGACGAGATACGGCACTATGCA
GCGGACATTATCAGTCTGCAGGAGATCGAAACGGAGCAATTCTATCACTT
CTTCCTGCCGGAACTCAAGAACGATGGGTACGAGGGAATCTTCTCACCGA
AGTCGCGTGCTAAGACTATGTCCGAGCTGGAGAGGAAGTACGTCGATGGC
TGTGCGATATTCTTCAGGGCGTCCAAGTTTACGCTGATCAAGGAATCATT
GATCGAGTTCAATCAGCTGGCAATGGCCAATGCCGAGGGCTCCGACAACA
TGCTGAACCGCGTAATGCCTAAGGATAACATCGGTCTGGCCGCACTGCTC
AAGGTGAAGGAGAACGCATGGGAGCCGATGTCCGAGGTGACGCAGATCTC
GCAGCCGCTGCTCGTCTGCACGGCGCACATACACTGGGACCCTGAGTTCT
GCGACGTCAAGCTCATCCAGACGATGATGCTTAGCAATGAGTTGAAGACG
ATCATCGACGAGGCGAGCCACAGTTTCCGACCTGGTCACAAGAACGACTC
CAATGCTGTCCAGCTGCTGCTGTGCGGTGACTTCAACTCGCTACCCGATT
CAGGCGTTGTGGAGTTTCTCGGCAAGGGCCGCGTTTCCATGGATCATTTG
GACTTCAAGGACATGGGCTACAAGTCCTGCCTGCAGCGGCTGCTCTCGAA
CGACACCAACGAGTTTACGCACTCGTTCAAGCTAGCCTCCGCCTACAACG
AGGACATAATGCCGCACACCAACTATACGTTCGATTTTAAGGGCATCATC
GACTACATTTTCTACACGAAGACGGGCATGGTGCCGCTGGGCCTGCTGGG
TCCTGTCTCCAATGATTGGCTGCGCGAGAATAAGGTTGTTGGATGCCCAC
ATCCGCATATACCCTCTGATCACTTCCCACTGCTGGTCGAGCTAGAGCTG
ATGCATACGGCTAGCCAACAGGCGCCTCCTAACGGGCTGATCAATCGCCG
GGCAAGCTTTCTAGACCAT
BO16359.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:11:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twin-RF | 1659 | CG31137-PF | 22..1656 | 17..1651 | 8175 | 100 | Plus |
| twin-RC | 1704 | CG31137-PC | 67..1701 | 17..1651 | 8175 | 100 | Plus |
| twin-RE | 1659 | CG31137-PE | 22..1656 | 17..1651 | 8175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:11:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twin-RF | 2690 | CG31137-RF | 208..1842 | 17..1651 | 8175 | 100 | Plus |
| twin-RC | 2586 | CG31137-RC | 104..1738 | 17..1651 | 8175 | 100 | Plus |
| twin-RE | 3548 | CG31137-RE | 368..2002 | 17..1651 | 8175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:11:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24198439..24199213 | 1651..877 | 3875 | 100 | Minus |
| 3R | 32079331 | 3R | 24199273..24199587 | 878..564 | 1575 | 100 | Minus |
| 3R | 32079331 | 3R | 24219964..24220157 | 319..126 | 955 | 99.5 | Minus |
| 3R | 32079331 | 3R | 24219600..24219776 | 494..318 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 24220214..24220329 | 132..17 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 24199882..24199951 | 564..495 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:11:04 has no hits.
BO16359.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:04 Download gff for
BO16359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 22..1659 | 17..1652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:49:39 Download gff for
BO16359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 368..2002 | 17..1653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:20 Download gff for
BO16359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 368..2002 | 17..1653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:04 Download gff for
BO16359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 368..2008 | 17..1655 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:12:46 Download gff for
BO16359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 368..2002 | 17..1653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:12:46 Download gff for
BO16359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24219965..24220151 | 132..318 | 100 | <- | Minus |
| 3R | 24220215..24220329 | 17..131 | 100 | | Minus |
| 3R | 24219600..24219775 | 319..494 | 100 | <- | Minus |
| 3R | 24198435..24199213 | 877..1653 | 99 | <- | Minus |
| 3R | 24199275..24199587 | 564..876 | 100 | <- | Minus |
| 3R | 24199883..24199951 | 495..563 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:20 Download gff for
BO16359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20024157..20024935 | 877..1653 | 99 | <- | Minus |
| arm_3R | 20024997..20025309 | 564..876 | 100 | <- | Minus |
| arm_3R | 20025605..20025673 | 495..563 | 100 | <- | Minus |
| arm_3R | 20045322..20045497 | 319..494 | 100 | <- | Minus |
| arm_3R | 20045687..20045873 | 132..318 | 100 | <- | Minus |
| arm_3R | 20045937..20046051 | 17..131 | 100 | | Minus |
BO16359.pep Sequence
Translation from 16 to 1669
> BO16359.pep
MSRNKDKYDSANRRQQIFLSQEDIAAGKKTNWSGLEITGCVRNISPSLWE
FEHLTALYLNDNQLLRLPADVGMLTSLRTLDLSSNKLRSLPAELGELIQL
RELLLNNNFLRVLPYEIGKLFHLVILGLMGNPLQKEFMNIYNEPNGTQKL
LTYMLDNLSFTVNPPPQRPWLPLAKPNKTRPACIFTVMCYNVLCDKYATR
QMYGYCPSWALCWEYRKKSIIDEIRHYAADIISLQEIETEQFYHFFLPEL
KNDGYEGIFSPKSRAKTMSELERKYVDGCAIFFRASKFTLIKESLIEFNQ
LAMANAEGSDNMLNRVMPKDNIGLAALLKVKENAWEPMSEVTQISQPLLV
CTAHIHWDPEFCDVKLIQTMMLSNELKTIIDEASHSFRPGHKNDSNAVQL
LLCGDFNSLPDSGVVEFLGKGRVSMDHLDFKDMGYKSCLQRLLSNDTNEF
THSFKLASAYNEDIMPHTNYTFDFKGIIDYIFYTKTGMVPLGLLGPVSND
WLRENKVVGCPHPHIPSDHFPLLVELELMHTASQQAPPNGLINRRASFLD
H
BO16359.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twin-PF | 552 | CG31137-PF | 8..552 | 1..545 | 2897 | 100 | Plus |
| twin-PC | 567 | CG31137-PC | 23..567 | 1..545 | 2897 | 100 | Plus |
| twin-PE | 552 | CG31137-PE | 8..552 | 1..545 | 2897 | 100 | Plus |
| twin-PB | 545 | CG31137-PB | 1..545 | 1..545 | 2897 | 100 | Plus |
| twin-PA | 552 | CG31137-PA | 8..552 | 1..545 | 2897 | 100 | Plus |
