Clone BO16363 Report

Search the DGRC for BO16363

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:63
Vector:pDNR-Dual
Associated Gene/Transcriptp53-RB
Protein status:BO16363.pep: validated full length
Sequenced Size:1519

Clone Sequence Records

BO16363.3prime Sequence

883 bp (807 high quality bases) assembled on 2006-10-13

> BO16363.3prime
ATGGTCTAGAAAGCTTGCTGGCAGCTCGTAGGCACGTTTCTTAAGGCTCA
GCAATTTGTTGGCATGGCGACGTAGATTCTCTTGGTTGGGATTGCGCAGG
ACTTCAGCCGCCGCCTCCTTAATCATGCCCTCGATGCTCTGCAGCAGCCA
TTCCTTATTGGGGCACGTAATAGCCAGACGGTAATCGCCATCCGGTGTCC
GCGACACGTTCCACTCTGCGGCGGAGTCGTCGCAGTCTCGGCTATCATTG
CTCTCCGTGTCCTCCGTCTTTATAGCAATGCACCGACGCACCTTGGACGG
CTCATCTTCTTCGGCGGCTTCCGGCACGGACTTGCGCTTCTTGCTATTGA
GCTGGCGTTCGTCTTGGATGCGATCCCGCTTGGGGCACGTACATATTTTA
ACATGTATAACATGCTGTCCCACGATATCGCCGCATGCTTTCTCCAGGCA
GAAGACTAAGGAAGTTTCTTTTCGCCCGATACACGAGTTTTGGCAGACGA
ACTTGAAGGCCAGGGTCTGGCGCGTGAGCCCACTGCGGGTTACAGACCGG
CTCATGTTCAGGGGGACTACAACGGAAAAACGCTCGGAAATTCCCTTGCC
CTGAGCATTTCCACAATATACACTGTTGGGATTCTCGCTGCGCAGCAAGC
TCTCGCGCATTTTTGCGTTATTGGCCGTCAAAGGCTCAACGCTAAGGTGA
TTTTGACAGCGGACCACGGGAGCACTCACATCATTGGAGAAGCAAAGGAA
CACACGCAAATTAAGTGGTTGGATGGGCATTTTAGACTTGAACTGAACGT
CCACGTTGAAAGCCTTGTTCATCCGGATGTAGAGCTTGTTCAGCGGAATC
GAGTACATCCAAAGAGACTTGGGCGGCTCATCC

BO16363.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG33336-PA 1158 p53-RA 291..1155 883..19 4300 99.8 Minus
CG33336-PB 1488 p53-RB 621..1485 883..19 4300 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:27:44
Subject Length Description Subject Range Query Range Score Percent Strand
p53-RE 1324 CG33336-RE 149..1013 883..19 4310 99.9 Minus
p53-RC 2095 CG33336-RC 920..1784 883..19 4310 99.9 Minus
p53-RB 1870 CG33336-RB 695..1559 883..19 4310 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23050047..23050442 39..434 1980 100 Plus
3R 32079331 3R 23050504..23050750 434..680 1235 100 Plus
3R 32079331 3R 23050815..23051017 681..883 1000 99.5 Plus
Blast to na_te.dros performed on 2015-02-10 16:27:40 has no hits.

BO16363.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:43 Download gff for BO16363.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33336-PB 621..1488 16..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:16:39 Download gff for BO16363.3prime
Subject Subject Range Query Range Percent Splice Strand
p53-RB 695..1565 11..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:05 Download gff for BO16363.3prime
Subject Subject Range Query Range Percent Splice Strand
p53-RB 695..1565 11..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:05 Download gff for BO16363.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23050047..23050441 39..433 100 <- Plus
3R 23050504..23050750 434..680 100 <- Plus
3R 23050815..23051017 681..883 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:16:39 Download gff for BO16363.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18875769..18876163 39..433 100 <- Plus
arm_3R 18876226..18876472 434..680 100 <- Plus
arm_3R 18876537..18876739 681..883 99   Plus

BO16363.5prime Sequence

898 bp (813 high quality bases) assembled on 2006-10-13

> BO16363.5prime
GAAGTTATCAGTCGACATGAGTCTTCACAAGTCCGCGTCGTTTAGCTTGA
CTTTTAACCAAAACACTTCGATTGTTTCGCGTAGCAATAGTCGCACAATT
TTTGAAGCTTTCAAGGAGTTCCTGGATTTTTGGGATATCGGCAACGAAGT
TTCTGCAGAGTCAGCAGTTCGGGTCTCCAGCAACGGAGCTTTCAACTTGC
CGCAGAGTTTTGGCAACGAATCCAACGAATATGCCCACCTGGCTACGCCT
GTGGATCCAGCCTACGGAGGCAACAACACGAACAACATGATGCAGTTCAC
GAACAATCTGGAAATTTTGGCCAACAATAATTCCGATGGCAATAACAAAA
TTAATGCATGCAACAAATTCGTCTGCCACAAGGGCACTGATTCCGAGGAT
GACTCCACGGAGGTCGATATCAAGGAGGATATTCCGAAAACGGTGGAGGT
ATCGGGATCGGAATTGACCACGGAACCCATGGCCTTCTTGCAGGGATTAA
ACTCCGGGAATCTGATGCAGTTCAGCCAGCAATCCGTGCTGCGCGAAATG
ATGCTGCAGGACATTCAGATCCAGGCGAACACGCTGCCCAAGCTAGAGAA
TCACAACATCGGTGGTTATTGCTTCAGCATGGTTCTGGATGAGCCGCCCA
AGTCTCTTTGGATGTACTCGATTCCGCTGAACAAGCTCTACATCCGGATG
AACAAGGCCTTCAACGTGGACGTTCAGTTCAAGTCTAAAATGCCCATCCA
ACCACTTAATTTGCGTGTGTTCCTTTGCTTCTCCAATGATGTGAGTGCTC
CCGTGGTCCGCTGTCAAAATCACCTTAGCGTTGAGCCTTTGACGGCCAAT
AACGCAAAAATGCGCGAGAGCTTGCTGCGCAGCGAGAATCCCAACAGT

BO16363.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG33336-PB 1488 p53-RB 1..882 17..898 4410 100 Plus
CG33336-PA 1158 p53-RA 38..552 384..898 2575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
p53-RB 1870 CG33336-RB 74..956 16..898 4415 100 Plus
p53-RC 2095 CG33336-RC 667..1181 384..898 2575 100 Plus
p53-RA 1577 CG33336-RA 149..663 384..898 2575 100 Plus
p53-RC 2095 CG33336-RC 74..442 16..384 1845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23053582..23053905 384..61 1620 100 Minus
3R 32079331 3R 23050815..23051127 839..527 1565 100 Minus
3R 32079331 3R 23053118..23053200 466..384 415 100 Minus
3R 32079331 3R 23050692..23050750 898..840 295 100 Minus
3R 32079331 3R 23053965..23054009 60..16 225 100 Minus
3R 32079331 3R 23053012..23053048 502..466 185 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:48:50 has no hits.

BO16363.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:44 Download gff for BO16363.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33336-PB 1..882 17..898 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:06:35 Download gff for BO16363.5prime
Subject Subject Range Query Range Percent Splice Strand
p53-RB 70..956 9..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:36 Download gff for BO16363.5prime
Subject Subject Range Query Range Percent Splice Strand
p53-RB 70..956 9..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:36 Download gff for BO16363.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23050692..23050750 840..898 100 <- Minus
3R 23050815..23051124 530..839 100 <- Minus
3R 23052922..23052948 503..529 100 <- Minus
3R 23053012..23053048 466..502 100 <- Minus
3R 23053119..23053199 385..465 100 <- Minus
3R 23053582..23053905 61..384 100 <- Minus
3R 23053965..23054013 9..60 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:06:35 Download gff for BO16363.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18876537..18876846 530..839 100 <- Minus
arm_3R 18878644..18878670 503..529 100 <- Minus
arm_3R 18876414..18876472 840..898 100 <- Minus
arm_3R 18878734..18878770 466..502 100 <- Minus
arm_3R 18878841..18878921 385..465 100 <- Minus
arm_3R 18879304..18879627 61..384 100 <- Minus
arm_3R 18879687..18879735 9..60 94   Minus

BO16363.complete Sequence

1519 bp assembled on 2006-10-11

GenBank Submission: FJ633796

> BO16363.complete
GAAGTTATCAGTCGACATGAGTCTTCACAAGTCCGCGTCGTTTAGCTTGA
CTTTTAACCAAAACACTTCGATTGTTTCGCGTAGCAATAGTCGCACAATT
TTTGAAGCTTTCAAGGAGTTCCTGGATTTTTGGGATATCGGCAACGAAGT
TTCTGCAGAGTCAGCAGTTCGGGTCTCCAGCAACGGAGCTTTCAACTTGC
CGCAGAGTTTTGGCAACGAATCCAACGAATATGCCCACCTGGCTACGCCT
GTGGATCCAGCCTACGGAGGCAACAACACGAACAACATGATGCAGTTCAC
GAACAATCTGGAAATTTTGGCCAACAATAATTCCGATGGCAATAACAAAA
TTAATGCATGCAACAAATTCGTCTGCCACAAGGGCACTGATTCCGAGGAT
GACTCCACGGAGGTCGATATCAAGGAGGATATTCCGAAAACGGTGGAGGT
ATCGGGATCGGAATTGACCACGGAACCCATGGCCTTCTTGCAGGGATTAA
ACTCCGGGAATCTGATGCAGTTCAGCCAGCAATCCGTGCTGCGCGAAATG
ATGCTGCAGGACATTCAGATCCAGGCGAACACGCTGCCCAAGCTAGAGAA
TCACAACATCGGTGGTTATTGCTTCAGCATGGTTCTGGATGAGCCGCCCA
AGTCTCTTTGGATGTACTCGATTCCGCTGAACAAGCTCTACATCCGGATG
AACAAGGCCTTCAACGTGGACGTTCAGTTCAAGTCTAAAATGCCCATCCA
ACCACTTAATTTGCGTGTGTTCCTTTGCTTCTCCAATGATGTGAGTGCTC
CCGTGGTCCGCTGTCAAAATCACCTTAGCGTTGAGCCTTTGACGGCCAAT
AACGCAAAAATGCGCGAGAGCTTGCTGCGCAGCGAGAATCCCAACAGTGT
ATATTGTGGAAATGCTCAGGGCAAGGGAATTTCCGAGCGTTTTTCCGTTG
TAGTCCCCCTGAACATGAGCCGGTCTGTAACCCGCAGTGGGCTCACGCGC
CAGACCCTGGCCTTCAAGTTCGTCTGCCAAAACTCGTGTATCGGGCGAAA
AGAAACTTCCTTAGTCTTCTGCCTGGAGAAAGCATGCGGCGATATCGTGG
GACAGCATGTTATACATGTTAAAATATGTACGTGCCCCAAGCGGGATCGC
ATCCAAGACGAACGCCAGCTCAATAGCAAGAAGCGCAAGTCCGTGCCGGA
AGCCGCCGAAGAAGATGAGCCGTCCAAGGTGCGTCGGTGCATTGCTATAA
AGACGGAGGACACGGAGAGCAATGATAGCCGAGACTGCGACGACTCCGCC
GCAGAGTGGAACGTGTCGCGGACACCGGATGGCGATTACCGTCTGGCTAT
TACGTGCCCCAATAAGGAATGGCTGCTGCAGAGCATCGAGGGCATGATTA
AGGAGGCGGCGGCTGAAGTCCTGCGCAATCCCAACCAAGAGAATCTACGT
CGCCATGCCAACAAATTGCTGAGCCTTAAGAAACGTGCCTACGAGCTGCC
AGCAAGCTTTCTAGACCAT

BO16363.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
p53-RB 1488 CG33336-PB 1..1485 17..1501 7425 100 Plus
p53-RC 1158 CG33336-PC 38..1155 384..1501 5590 100 Plus
p53-RA 1158 CG33336-PA 38..1155 384..1501 5590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
p53-RB 1870 CG33336-RB 74..1559 16..1501 7430 100 Plus
p53-RC 2095 CG33336-RC 667..1784 384..1501 5590 100 Plus
p53-RA 1577 CG33336-RA 149..1266 384..1501 5590 100 Plus
p53-RC 2095 CG33336-RC 74..442 16..384 1845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23050047..23050442 1481..1086 1980 100 Minus
3R 32079331 3R 23053582..23053905 384..61 1620 100 Minus
3R 32079331 3R 23050815..23051127 839..527 1565 100 Minus
3R 32079331 3R 23050504..23050750 1086..840 1235 100 Minus
3R 32079331 3R 23053118..23053200 466..384 415 100 Minus
3R 32079331 3R 23053965..23054009 60..16 225 100 Minus
3R 32079331 3R 23053012..23053048 502..466 185 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:17:14 has no hits.

BO16363.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:11 Download gff for BO16363.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 1..1488 17..1504 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:38 Download gff for BO16363.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 70..1565 9..1509 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:13 Download gff for BO16363.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 75..1559 17..1503 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:12 Download gff for BO16363.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 70..1565 9..1509 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:08 Download gff for BO16363.complete
Subject Subject Range Query Range Percent Splice Strand
p53-RB 75..1559 17..1503 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:08 Download gff for BO16363.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23053012..23053048 466..502 100 <- Minus
3R 23053119..23053199 385..465 100 <- Minus
3R 23050504..23050750 840..1086 100 <- Minus
3R 23050815..23051124 530..839 100 <- Minus
3R 23052922..23052948 503..529 100 <- Minus
3R 23053582..23053905 61..384 100 <- Minus
3R 23053965..23054008 17..60 100   Minus
3R 23049964..23049987 1482..1503 91 <- Minus
3R 23050047..23050441 1087..1481 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:13 Download gff for BO16363.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18878841..18878921 385..465 100 <- Minus
arm_3R 18875686..18875709 1482..1503 91 <- Minus
arm_3R 18875769..18876163 1087..1481 100 <- Minus
arm_3R 18876226..18876472 840..1086 100 <- Minus
arm_3R 18876537..18876846 530..839 100 <- Minus
arm_3R 18878644..18878670 503..529 100 <- Minus
arm_3R 18878734..18878770 466..502 100 <- Minus
arm_3R 18879304..18879627 61..384 100 <- Minus
arm_3R 18879687..18879730 17..60 100   Minus

BO16363.pep Sequence

Translation from 16 to 1519

> BO16363.pep
MSLHKSASFSLTFNQNTSIVSRSNSRTIFEAFKEFLDFWDIGNEVSAESA
VRVSSNGAFNLPQSFGNESNEYAHLATPVDPAYGGNNTNNMMQFTNNLEI
LANNNSDGNNKINACNKFVCHKGTDSEDDSTEVDIKEDIPKTVEVSGSEL
TTEPMAFLQGLNSGNLMQFSQQSVLREMMLQDIQIQANTLPKLENHNIGG
YCFSMVLDEPPKSLWMYSIPLNKLYIRMNKAFNVDVQFKSKMPIQPLNLR
VFLCFSNDVSAPVVRCQNHLSVEPLTANNAKMRESLLRSENPNSVYCGNA
QGKGISERFSVVVPLNMSRSVTRSGLTRQTLAFKFVCQNSCIGRKETSLV
FCLEKACGDIVGQHVIHVKICTCPKRDRIQDERQLNSKKRKSVPEAAEED
EPSKVRRCIAIKTEDTESNDSRDCDDSAAEWNVSRTPDGDYRLAITCPNK
EWLLQSIEGMIKEAAAEVLRNPNQENLRRHANKLLSLKKRAYELPASFLD
H

BO16363.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:15
Subject Length Description Subject Range Query Range Score Percent Strand
p53-PB 495 CG33336-PB 1..495 1..495 2581 100 Plus
p53-PC 385 CG33336-PC 12..385 122..495 1935 99.5 Plus
p53-PA 385 CG33336-PA 12..385 122..495 1935 99.5 Plus
p53-PE 334 CG33336-PE 10..334 171..495 1695 99.7 Plus