Clone Sequence Records
BO16364.3prime Sequence
970 bp (873 high quality bases) assembled on 2006-10-13
> BO16364.3prime
ATGGTCTAGAAAGCTTGCTTCCTTCCTGCGCTGGAGGCCGTTCTTGCTTG
GCTCGTAGAATTCCTCGACAATGGCCTCCACCATGGTATTCATTGTATTA
GTCAGCTTGGCCCAGTTTTTCTCGTCCGGCTTGCCACACATTTCGGCGTA
GTACTTCATCTTGGGCTCCGTGCCGCTGGTGCGTAGAGTGACCACGAGTC
CGTTTTTGAAGGTAAATGTGATCATTTGGGAACTGGAGCTGGTCGGCAAG
GTGGCCTTCTTGTCGCCAGTGCTACTGTCGAATCCCGTGGTTAAATCGCG
AACGTTTTCAATCTCGTACTCGCCGTTAAGGATGCTGGTCGGATACGTGT
CTGCCTTGCCCTCGTCCCAGGTGCGCAAGCGCTCAAAGATCTGCTCGATG
ACCGGCGGGCAACGGCATATGACATAGGAGCTGACAGTCGTGTGGAACCC
ATATGTTTCGTAGATGTCGCGCAGTTTCTCCTGCAGTGTCATGCACAGCT
TGCACCGAAGATAGCACGCCATAGTGGCCAAATGGCCAGCCGCGCTGACA
CCATCCTTGTCAAGTACGGTGGTGCCGACCATGAAGCCGATCGCCTCTTC
GAAGGCAAACAACACAGTTTTTCCCGCCTGCTGTAGCTCGATTGCCTTGT
TACCCATCCACTTGAATCCAGTCAGCGTTTCGAAGAACTGGAAGCCTTCC
CGCTCGGCCATGGCCCTGAGAATCTTTGAGCTCACCGTACTGGCTATCAT
CACACAGTTACTAACATCGCAGTCGGGTTCTCGCATTTTGTGCAGCTCCA
GAGACCACCAGCCCAAAAGAGCGCCCACTTCGTTGCCGCTGAACAGCTTA
TAGCTACCATCCTCGCGTACTTCGGCAACTGCCAGGCGGTCGGCATCCGG
ATCGTTGGCTAAATTATTTGGCTGCTGTTGGCTTTCGCCGTTTTAATTGA
TAAATCCAACGAGGTCTTTT
BO16364.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:56:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8073-PA | 1872 | Pmm45A-RA | 918..1869 | 969..19 | 4695 | 99.7 | Minus |
| CG8073-PB | 1755 | Pmm45A-RB | 918..1696 | 969..192 | 3830 | 99.7 | Minus |
| CG8073-PB | 1755 | Pmm45A-RB | 1695..1752 | 76..19 | 290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pmm45A-RA | 2443 | CG8073-RA | 1242..2193 | 969..19 | 4720 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:06:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9107401..9108352 | 19..969 | 4695 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:06:09 has no hits.
BO16364.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:45 Download gff for
BO16364.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8073-PA | 917..1872 | 15..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:29:12 Download gff for
BO16364.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 1241..2196 | 15..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:34:36 Download gff for
BO16364.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 1241..2196 | 15..970 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:34:36 Download gff for
BO16364.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9107398..9108352 | 15..970 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:29:12 Download gff for
BO16364.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4994903..4995857 | 15..970 | 99 | | Plus |
BO16364.5prime Sequence
880 bp (807 high quality bases) assembled on 2006-10-13
> BO16364.5prime
GAAGTTATCAGTCGACATGTGTCAATCCGGCGGCCAGATGCTGTGCGAGA
TCAAGAACATGGCTCTTTCGGGCGATCCGGAGCTAGATGGCGAGATCCGC
AAGTGGATTCGATGGGACAAATGCGCTAGCACCGCCTGCCAAATCATGGA
CGCAGTTCGGGCGAAAGACTGGGACACGCTGCGCAAGAGACTGTGCACCC
GCATCAGCTTCGGCACGGCCGGATTGAGGGCTTGCATGCGGGCTGGCTTT
GACTCCATGAACGAGCTGGTGGTGATTCAGACGGCGCAGGGCTTATGTGA
GTACATCAAGGAACAGTACCCTGATCCGGCGGACTGGTCCGGACGTGGCA
TTGTCTTCGGGTATGACGGTCGTTACAATAGCCACCGCTTCGCCGAGCTC
TCGGCCATTGTGTTCCTAAACAACGACTTTAAGGTGTGGTTGTTCAAGCG
CTACGTGGCCACGCCCATGGTGCCCTTTGCCATCTTGAGGCTACAGTGCT
TGGCCGGCGTCATGGTGACCGCCTCGCACAATCCCAAGGAGGACAATGGC
TACAAGGTGTACTGGACCAATGGAGCCCAAATCATTCCGCCGCACGACGA
GGGCATACAGGAGTCGATTCTAAACAATTTGGAGCCCAAGGGCTCATCCT
GGGACGATTCGGCGATGTGCTCGAACACAATGCTGGAGGATCCGTACGAT
ATCGTTGTGCCGCCCTATTTCGATATACTGAAGAAACAACTGCCTTGCAC
TTCGCTGGAGGCCAACGGAAGGTGCTCTCTCTCATTCACCTATACGGCCA
TGCACGGCGTGGGCTATGCATTTGTGAAGCAGGCTTTCGCCCGAATCAAT
CTTAAGCCTTTCATATCGGTGTGCGAGCAG
BO16364.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8073-PB | 1755 | Pmm45A-RB | 1..864 | 17..880 | 4295 | 99.8 | Plus |
| CG8073-PA | 1872 | Pmm45A-RA | 1..864 | 17..880 | 4295 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pmm45A-RA | 2443 | CG8073-RA | 324..1188 | 16..880 | 4310 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9108406..9109006 | 880..280 | 2990 | 99.8 | Minus |
| 2R | 25286936 | 2R | 9109233..9109395 | 178..16 | 815 | 100 | Minus |
| 2R | 25286936 | 2R | 9109070..9109172 | 280..178 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:06:25 has no hits.
BO16364.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:46 Download gff for
BO16364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8073-PA | 1..864 | 17..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:29:17 Download gff for
BO16364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 316..1188 | 8..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:35:43 Download gff for
BO16364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 316..1188 | 8..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:35:43 Download gff for
BO16364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9109071..9109172 | 178..279 | 100 | <- | Minus |
| 2R | 9109234..9109403 | 8..177 | 98 | | Minus |
| 2R | 9108406..9109006 | 280..880 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:29:17 Download gff for
BO16364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4995911..4996511 | 280..880 | 99 | <- | Minus |
| arm_2R | 4996576..4996677 | 178..279 | 100 | <- | Minus |
| arm_2R | 4996739..4996908 | 8..177 | 98 | | Minus |
BO16364.complete Sequence
1903 bp assembled on 2007-03-23
GenBank Submission: FJ633797
> BO16364.complete
GAAGTTATCAGTCGACATGTGTCAATCCGGCGGCCAGATGCTGTGCGAGA
TCAAGAACATGGCTCTTTCGGGCGATCCGGAGCTAGATGGCGAGATCCGC
AAGTGGATTCGATGGGACAAATGCGCTAGCACCGCCTGCCAAATCATGGA
CGCAGTTCGGGCGAAAGACTGGGACACGCTGCGCAAGAGACTGTGCACCC
GCATCAGCTTCGGCACGGCCGGATTGAGGGCTTGCATGCGGGCTGGCTTT
GACTCCATGAACGAGCTGGTGGTGATTCAGACGGCGCAGGGCTTATGTGA
GTACATCAAGGAACAGTACCCTGATCCGGCGGACTGGTCCGGACGTGGCA
TTGTCTTCGGGTATGACGGTCGTTACAATAGCCACCGCTTCGCCGAGCTC
TCGGCCATTGTGTTCCTAAACAACGACTTTAAGGTGTGGTTGTTCAAGCG
CTACGTGGCCACGCCCATGGTGCCCTTTGCCATCTTGAGGCTACAGTGCT
TGGCCGGCGTCATGGTGACCGCCTCGCACAATCCCAAGGAGGACAATGGC
TACAAGGTGTACTGGACCAATGGAGCCCAAATCATTCCGCCGCACGACGA
GGGCATACAGGAGTCGATTCTAAACAATTTGGAGCCCAAGGGCTCATCCT
GGGACGATTCGGCGATGTGCTCGAACACAATGCTGGAGGATCCGTACGAT
ATCGTTGTGCCGCCCTATTTCGATATACTGAAGAAACAACTGCCTTGCAC
TTCGCTGGAGGCCAACGGAAGGTGCTCTCTCTCATTCACCTATACGGCCA
TGCACGGCGTGGGCTATGCATTTGTGAAGCAGGCTTTCGCCCGAATCAAT
CTTAAGCCTTTCATATCGGTGTGCGAGCAGCAGGAGCCGGACCCAGAGTT
CCCCACCACTCCGATGCCCAACCCGGAGGAGGGAAAGACCTCGTTGGATT
TATCAATTAAAACGGCGAAAGCCAACAGCAGCCAAATAATTTTAGCCAAC
GATCCGGATGCCGACCGCCTGGCAGTTGCCGAAGTACGCGAGGATGGTAG
CTATAAGCTGTTCAGCGGCAACGAAGTGGGCGCTCTTTTGGGCTGGTGGT
CTCTGGAGCTGCACAAAATGCGAGAACCCGACTGCGATGTTAGTAACTGT
GTGATGATAGCCAGTACGGTGAGCTCAAAGATTCTCAGGGCCATGGCCGA
GCGGGAAGGCTTCCAGTTCTTCGAAACGCTGACTGGATTCAAGTGGATGG
GTAACAAGGCAATCGAGCTACAGCAGGCGGGAAAAACTGTGTTGTTTGCC
TTCGAAGAGGCGATCGGCTTCATGGTCGGCACCACCGTACTTGACAAGGA
TGGTGTCAGCGCGGCTGGCCATTTGGCCACTATGGCGTGCTATCTTCGGT
GCAAGCTGTGCATGACACTGCAGGAGAAACTGCGCGACATCTACGAAACA
TATGGGTTCCACACGACTGTCAGCTCCTATGTCATATGCCGTTGCCCGCC
GGTCATCGAGCAGATCTTTGAGCGCTTGCGCACCTGGGACGAGGGCAAGG
CAGACACGTATCCGACCAGCATCCTTAACGGCGAGTACGAGATTGAAAAC
GTTCGCGATTTAACCACGGGATTCGACAGTAGCACTGGCGACAAGAAGGC
CACCTTGCCGACCAGCTCCAGTTCCCAAATGATCACATTTACCTTCAAAA
ACGGACTCGTGGTCACTCTACGCACCAGCGGCACGGAGCCCAAGATGAAG
TACTACGCCGAAATGTGTGGCAAGCCGGACGAGAAAAACTGGGCCAAGCT
GACTAATACAATGAATACCATGGTGGAGGCCATTGTCGAGGAATTCTACG
AGCCAAGCAAGAACGGCCTCCAGCGCAGGAAGGAAGCAAGCTTTCTAGAC
CAT
BO16364.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pmm45A-RA | 1872 | CG8073-PA | 1..1869 | 17..1885 | 9315 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pmm45A-RA | 2443 | CG8073-RA | 324..2193 | 16..1885 | 9320 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9107401..9109006 | 1885..280 | 8000 | 99.9 | Minus |
| 2R | 25286936 | 2R | 9109233..9109395 | 178..16 | 815 | 100 | Minus |
| 2R | 25286936 | 2R | 9109070..9109172 | 280..178 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:32:56 has no hits.
BO16364.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:11:06 Download gff for
BO16364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 1..1872 | 17..1889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:29:06 Download gff for
BO16364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 321..2201 | 8..1889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:26 Download gff for
BO16364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 325..2193 | 17..1887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:11:06 Download gff for
BO16364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 321..2201 | 8..1889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:57 Download gff for
BO16364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 325..2193 | 17..1887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:57 Download gff for
BO16364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9107399..9109006 | 280..1887 | 99 | <- | Minus |
| 2R | 9109071..9109172 | 178..279 | 100 | <- | Minus |
| 2R | 9109234..9109394 | 17..177 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:26 Download gff for
BO16364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4994904..4996511 | 280..1887 | 99 | <- | Minus |
| arm_2R | 4996576..4996677 | 178..279 | 100 | <- | Minus |
| arm_2R | 4996739..4996899 | 17..177 | 100 | | Minus |
BO16364.pep Sequence
Translation from 16 to 1903
> BO16364.pep
MCQSGGQMLCEIKNMALSGDPELDGEIRKWIRWDKCASTACQIMDAVRAK
DWDTLRKRLCTRISFGTAGLRACMRAGFDSMNELVVIQTAQGLCEYIKEQ
YPDPADWSGRGIVFGYDGRYNSHRFAELSAIVFLNNDFKVWLFKRYVATP
MVPFAILRLQCLAGVMVTASHNPKEDNGYKVYWTNGAQIIPPHDEGIQES
ILNNLEPKGSSWDDSAMCSNTMLEDPYDIVVPPYFDILKKQLPCTSLEAN
GRCSLSFTYTAMHGVGYAFVKQAFARINLKPFISVCEQQEPDPEFPTTPM
PNPEEGKTSLDLSIKTAKANSSQIILANDPDADRLAVAEVREDGSYKLFS
GNEVGALLGWWSLELHKMREPDCDVSNCVMIASTVSSKILRAMAEREGFQ
FFETLTGFKWMGNKAIELQQAGKTVLFAFEEAIGFMVGTTVLDKDGVSAA
GHLATMACYLRCKLCMTLQEKLRDIYETYGFHTTVSSYVICRCPPVIEQI
FERLRTWDEGKADTYPTSILNGEYEIENVRDLTTGFDSSTGDKKATLPTS
SSSQMITFTFKNGLVVTLRTSGTEPKMKYYAEMCGKPDEKNWAKLTNTMN
TMVEAIVEEFYEPSKNGLQRRKEASFLDH
BO16364.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pmm45A-PA | 623 | CG8073-PA | 1..623 | 1..623 | 3316 | 100 | Plus |
| CG10202-PA | 628 | CG10202-PA | 17..621 | 12..618 | 1723 | 52.7 | Plus |
