Clone Sequence Records
BO16372.5prime Sequence
293 bp (293 high quality bases) assembled on 2006-10-13
> BO16372.5prime
GAAGTTATCAGTCGACATGCCCGAAGAAAAGTTCAAGTTTCCCATGCATG
ACTTACACTTGAAGCAAACGTTTCGCAATGTAAAAATGGCCTGCACTTTG
GCCCTGTTAGCTCCACTTCTTTTCTACACTTTACACAACAATCCGCGCAA
GAGGAAGTACAGGAACTTTTACTCCACTTACGATCCCATGGATGCGTTCG
ACCGCATGATGAGTGGAGGATACCTATCGTCCTGTCCGCCGGGCAGTGGT
CCCAAAAAGGATGACAAGAAGAAGAAAGCAAGCTTTCTAGACC
BO16372.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31644-PA | 264 | CG31644-RA | 1..261 | 17..277 | 1255 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:01:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31644-RA | 480 | CG31644-RA | 59..319 | 17..277 | 1275 | 99.2 | Plus |
CG31644-RC | 489 | CG31644-RC | 81..328 | 30..277 | 1210 | 99.2 | Plus |
CG31644-RB | 474 | CG31644-RB | 71..313 | 35..277 | 1200 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5818051..5818298 | 277..30 | 1210 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:01:16 has no hits.
BO16372.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:57 Download gff for
BO16372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-PA | 1..264 | 17..278 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:42:58 Download gff for
BO16372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-RA | 53..319 | 12..277 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:45 Download gff for
BO16372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-RA | 53..319 | 12..277 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:45 Download gff for
BO16372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5818048..5818296 | 32..282 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:42:58 Download gff for
BO16372.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5818048..5818296 | 32..282 | 98 | <- | Minus |
BO16372.3prime Sequence
293 bp (293 high quality bases) assembled on 2006-10-13
> BO16372.3prime
ATGGTCTAGAAAGCTTGCTTTCTTCTTCTTGTCATCCTTTTTGGGACCAC
TGCCCGGCGGACAGGACGATAGGTATCCTCCACTCATCATGCGGTCGAAC
GCATCCATGGGATCGTAAGTGGAGTAAAAGTTCCTGTACTTCCTCTTGCG
CGGATTGTTGTGTAAAGTGTAGAAAAGAAGTGGAGCTAACAGGGCCAAAG
TGCAGGCCATTTTTACATTGCGAAACGTTTGCTTCAAGTGTAAGTCATGC
ATGGGAAACTTGAACTTTTCTTCGGGCATGTCGACTGATAACT
BO16372.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31644-PA | 264 | CG31644-RA | 1..261 | 279..19 | 1255 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31644-RA | 480 | CG31644-RA | 59..319 | 279..19 | 1275 | 99.2 | Minus |
CG31644-RC | 489 | CG31644-RC | 81..328 | 266..19 | 1210 | 99.2 | Minus |
CG31644-RB | 474 | CG31644-RB | 71..313 | 261..19 | 1200 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5818051..5818298 | 19..266 | 1210 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:22:46 has no hits.
BO16372.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:49:56 Download gff for
BO16372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-PA | 1..264 | 18..279 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:00 Download gff for
BO16372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-RA | 53..319 | 19..284 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:08:17 Download gff for
BO16372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-RA | 53..319 | 19..284 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:08:17 Download gff for
BO16372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5818048..5818296 | 14..264 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:00 Download gff for
BO16372.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5818048..5818296 | 14..264 | 98 | <- | Plus |
BO16372.complete Sequence
295 bp assembled on 2006-10-11
GenBank Submission: FJ633799
> BO16372.complete
GAAGTTATCAGTCGACATGCCCGAAGAAAAGTTCAAGTTTCCCATGCATG
ACTTACACTTGAAGCAAACGTTTCGCAATGTAAAAATGGCCTGCACTTTG
GCCCTGTTAGCTCCACTTCTTTTCTACACTTTACACAACAATCCGCGCAA
GAGGAAGTACAGGAACTTTTACTCCACTTACGATCCCATGGATGCGTTCG
ACCGCATGATGAGTGGAGGATACCTATCGTCCTGTCCGCCGGGCAGTGGT
CCCAAAAAGGATGACAAGAAGAAGAAAGCAAGCTTTCTAGACCAT
BO16372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31644-RA | 264 | CG31644-PA | 1..261 | 17..277 | 1275 | 99.2 | Plus |
CG31644-RC | 273 | CG31644-PC | 23..270 | 30..277 | 1210 | 99.2 | Plus |
CG31644-RB | 258 | CG31644-PB | 13..255 | 35..277 | 1200 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31644-RA | 480 | CG31644-RA | 59..319 | 17..277 | 1275 | 99.2 | Plus |
CG31644-RC | 489 | CG31644-RC | 81..328 | 30..277 | 1210 | 99.2 | Plus |
CG31644-RB | 474 | CG31644-RB | 71..313 | 35..277 | 1200 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5818051..5818298 | 277..30 | 1210 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:40:06 has no hits.
BO16372.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:33 Download gff for
BO16372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-RA | 1..264 | 17..278 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:48 Download gff for
BO16372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-RA | 1..269 | 10..277 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:54 Download gff for
BO16372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-RA | 59..319 | 17..279 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:33 Download gff for
BO16372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-RA | 1..269 | 10..277 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:15 Download gff for
BO16372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31644-RA | 59..319 | 17..279 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:15 Download gff for
BO16372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5818049..5818296 | 32..279 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:54 Download gff for
BO16372.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5818049..5818296 | 32..279 | 98 | <- | Minus |
BO16372.pep Sequence
Translation from 16 to 295
> BO16372.pep
MPEEKFKFPMHDLHLKQTFRNVKMACTLALLAPLLFYTLHNNPRKRKYRN
FYSTYDPMDAFDRMMSGGYLSSCPPGSGPKKDDKKKKASFLDH
BO16372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31644-PA | 87 | CG31644-PA | 1..87 | 1..87 | 479 | 100 | Plus |
CG31644-PC | 90 | CG31644-PC | 1..90 | 1..87 | 465 | 96.7 | Plus |
CG31644-PB | 85 | CG31644-PB | 1..85 | 1..87 | 455 | 97.7 | Plus |