Clone BO16375 Report

Search the DGRC for BO16375

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG32148-RA
Protein status:BO16375.pep: validated full length
Sequenced Size:283

Clone Sequence Records

BO16375.3prime Sequence

281 bp (281 high quality bases) assembled on 2006-10-13

> BO16375.3prime
ATGGTCTAGAAAGCTTGCTTTCTCGGGGCGACAGGGTCCATCTTTGCAAG
GATCCCGACATCGTTTGCTCTTCTCCTTCTTGTTCTCCCTCCTAAATGGT
TCGGACTTCTTAAAGCAGCCGCCAAAGAACTGATTCTTATTACAGGTTTT
CTTGCCCTTTTCGGTGCCTTGACTTTGGCTCTTCTTTTTGGCCATTCCTC
TGCAAAAGTATAGTGATTGATGAAGCAACTCGTTTTTGGGCAGAAATTTT
AACAGAATTCCACTCATGTCGACTGATAACT

BO16375.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:58:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32148-PA 252 CG32148-RA 1..249 267..19 1220 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG32148-RA 456 CG32148-RA 75..323 267..19 1230 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15023566..15023725 267..108 800 100 Minus
3L 28110227 3L 15023788..15023876 107..19 430 98.9 Minus
Blast to na_te.dros performed on 2015-02-12 12:27:39 has no hits.

BO16375.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:01 Download gff for BO16375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32148-PA 1..252 18..267 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:29:27 Download gff for BO16375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32148-RA 67..323 19..276 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:24 Download gff for BO16375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32148-RA 67..323 19..276 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:24 Download gff for BO16375.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15023788..15023876 19..107 98   Minus
3L 15023558..15023725 108..276 97 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:29:27 Download gff for BO16375.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15016658..15016825 108..276 97 -> Minus
arm_3L 15016888..15016976 19..107 98   Minus

BO16375.5prime Sequence

281 bp (281 high quality bases) assembled on 2006-10-13

> BO16375.5prime
GAAGTTATCAGTCGACATGAGTGGAATTCTGTTAAAATTTCTGCCCAAAA
ACGAGTTGCTTCATCAATCACTATACTTTTGCAGAGGAATGGCCAAAAAG
AAGAGCCAAAGTCAAGGCACCGAAAAGGGCAAGAAAACCTGTAATAAGAA
TCAGTTCTTTGGCGGCTGCTTTAAGAAGTCCGAACCATTTAGGAGGGAGA
ACAAGAAGGAGAAGAGCAAACGATGTCGGGATCCTTGCAAAGATGGACCC
TGTCGCCCCGAGAAAGCAAGCTTTCTAGACC

BO16375.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG32148-PA 252 CG32148-RA 1..249 17..265 1220 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG32148-RA 456 CG32148-RA 75..323 17..265 1230 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15023566..15023725 17..176 800 100 Plus
3L 28110227 3L 15023788..15023876 177..265 430 98.9 Plus
Blast to na_te.dros performed on 2015-02-12 10:32:43 has no hits.

BO16375.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:02 Download gff for BO16375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32148-PA 1..252 17..266 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 23:34:36 Download gff for BO16375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32148-RA 67..323 8..265 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:02:51 Download gff for BO16375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32148-RA 67..323 8..265 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:02:51 Download gff for BO16375.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15023558..15023725 8..176 97 -> Plus
3L 15023788..15023876 177..265 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 23:34:36 Download gff for BO16375.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15016658..15016825 8..176 97 -> Plus
arm_3L 15016888..15016976 177..265 98   Plus

BO16375.complete Sequence

283 bp assembled on 2007-10-17

GenBank Submission: FJ633801

> BO16375.complete
GAAGTTATCAGTCGACATGAGTGGAATTCTGTTAAAATTTCTGCCCAAAA
ACGAGTTGCTTCATCAATCACTATACTTTTGCAGAGGAATGGCCAAAAAG
AAGAGCCAAAGTCAAGGCACCGAAAAGGGCAAGAAAACCTGTAATAAGAA
TCAGTTCTTTGGCGGCTGCTTTAAGAAGTCCGAACCATTTAGGAGGGAGA
ACAAGAAGGAGAAGAGCAAACGATGTCGGGATCCTTGCAAAGATGGACCC
TGTCGCCCCGAGAAAGCAAGCTTTCTAGACCAT

BO16375.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG32148-RA 252 CG32148-PA 1..249 17..265 1230 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG32148-RA 456 CG32148-RA 75..323 17..265 1230 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15023566..15023725 17..176 800 100 Plus
3L 28110227 3L 15023788..15023876 177..265 430 98.9 Plus
Blast to na_te.dros performed on 2014-11-28 00:05:59 has no hits.

BO16375.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:06 Download gff for BO16375.complete
Subject Subject Range Query Range Percent Splice Strand
CG32148-RA 1..252 17..266 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:42 Download gff for BO16375.complete
Subject Subject Range Query Range Percent Splice Strand
CG32148-RA 67..323 8..265 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:45:30 Download gff for BO16375.complete
Subject Subject Range Query Range Percent Splice Strand
CG32148-RA 75..323 17..267 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:25 Download gff for BO16375.complete
Subject Subject Range Query Range Percent Splice Strand
CG32148-RA 75..323 17..267 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:14:26 Download gff for BO16375.complete
Subject Subject Range Query Range Percent Splice Strand
CG32148-RA 75..323 17..267 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:14:26 Download gff for BO16375.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15023566..15023725 17..176 100 -> Plus
3L 15023788..15023876 177..267 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:45:30 Download gff for BO16375.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15016666..15016825 17..176 100 -> Plus
arm_3L 15016888..15016976 177..267 96   Plus

BO16375.pep Sequence

Translation from 16 to 283

> BO16375.pep
MSGILLKFLPKNELLHQSLYFCRGMAKKKSQSQGTEKGKKTCNKNQFFGG
CFKKSEPFRRENKKEKSKRCRDPCKDGPCRPEKASFLDH

BO16375.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG32148-PA 83 CG32148-PA 1..83 1..83 459 100 Plus