Clone Sequence Records
BO16376.3prime Sequence
446 bp (446 high quality bases) assembled on 2006-10-13
> BO16376.3prime
ATGGTCTAGAAAGCTTGCGGGGGAATCCTCGCTGGCATACTGCTCTTCCT
GTGAGTTCTTCATCTGGCCCACGGTGTCGTAGAGCGCCACCAGCTTACGC
ACGGAGCTGCCAAGGTGCTCCACGCGATGCCTGTAGGCCAGGCAGCCCTC
CAGAGCGCTGTATGTCTCCTCCCGCTGGTCACTGCTAGACATGAGCAGCT
TGAAGTTCTCCAGGATCTTGGACAGGGTCATCTCAGCCTCCGGCCTGAGG
TTGTACATCTTCTGGGTCTCCGACAAAGCCACATTCTGACTGAATGCCTT
GCTGTTGGACTCGATGTGGAGCAATGTGTTGTTCGACCGCTCCATTATCT
CGTCTATCTTAGCCAGCTGGCGGTTCATGGTCTGCCGATTGGCCGCCATT
CCCGCCAACATTTTGTCCACAGCGTCTGACATGTCGACTGATAACT
BO16376.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13914-PA | 417 | CG13914-RA | 1..414 | 432..19 | 2070 | 100 | Minus |
CG13914-PB | 417 | CG13914-RB | 1..414 | 432..19 | 2070 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msd1-RA | 528 | CG13914-RA | 34..452 | 437..19 | 2080 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:44:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1331873..1332250 | 396..19 | 1890 | 100 | Minus |
3L | 28110227 | 3L | 1331777..1331818 | 437..396 | 195 | 97.6 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:44:27 has no hits.
BO16376.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:03 Download gff for
BO16376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13914-PB | 1..417 | 18..432 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:24 Download gff for
BO16376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msd1-RA | 27..457 | 12..446 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:01 Download gff for
BO16376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msd1-RA | 27..457 | 12..446 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:01 Download gff for
BO16376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1331874..1332255 | 12..395 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:24 Download gff for
BO16376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1331874..1332255 | 12..395 | 99 | | Minus |
BO16376.5prime Sequence
446 bp (446 high quality bases) assembled on 2006-10-13
> BO16376.5prime
GAAGTTATCAGTCGACATGTCAGACGCTGTGGACAAAATGTTGGCGGGAA
TGGCGGCCAATCGGCAGACCATGAACCGCCAGCTGGCTAAGATAGACGAG
ATAATGGAGCGGTCGAACAACACATTGCTCCACATCGAGTCCAACAGCAA
GGCATTCAGTCAGAATGTGGCTTTGTCGGAGACCCAGAAGATGTACAACC
TCAGGCCGGAGGCTGAGATGACCCTGTCCAAGATCCTGGAGAACTTCAAG
CTGCTCATGTCTAGCAGTGACCAGCGGGAGGAGACATACAGCGCTCTGGA
GGGCTGCCTGGCCTACAGGCATCGCGTGGAGCACCTTGGCAGCTCCGTGC
GTAAGCTGGTGGCGCTCTACGACACCGTGGGCCAGATGAAGAACTCACAG
GAAGAGCAGTATGCCAGCGAGGATTCCCCCGCAAGCTTTCTAGACC
BO16376.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13914-PA | 417 | CG13914-RA | 1..414 | 17..430 | 2070 | 100 | Plus |
CG13914-PB | 417 | CG13914-RB | 1..414 | 17..430 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msd1-RA | 528 | CG13914-RA | 34..452 | 12..430 | 2080 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1331873..1332250 | 53..430 | 1890 | 100 | Plus |
3L | 28110227 | 3L | 1331777..1331818 | 12..53 | 195 | 97.6 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:44:50 has no hits.
BO16376.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:04 Download gff for
BO16376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13914-PB | 1..417 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:27 Download gff for
BO16376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msd1-RA | 27..457 | 3..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:04 Download gff for
BO16376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msd1-RA | 27..457 | 3..437 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:04 Download gff for
BO16376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1331874..1332255 | 54..437 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:27 Download gff for
BO16376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1331874..1332255 | 54..437 | 99 | | Plus |
BO16376.complete Sequence
448 bp assembled on 2006-10-11
GenBank Submission: FJ633802
> BO16376.complete
GAAGTTATCAGTCGACATGTCAGACGCTGTGGACAAAATGTTGGCGGGAA
TGGCGGCCAATCGGCAGACCATGAACCGCCAGCTGGCTAAGATAGACGAG
ATAATGGAGCGGTCGAACAACACATTGCTCCACATCGAGTCCAACAGCAA
GGCATTCAGTCAGAATGTGGCTTTGTCGGAGACCCAGAAGATGTACAACC
TCAGGCCGGAGGCTGAGATGACCCTGTCCAAGATCCTGGAGAACTTCAAG
CTGCTCATGTCTAGCAGTGACCAGCGGGAGGAGACATACAGCGCTCTGGA
GGGCTGCCTGGCCTACAGGCATCGCGTGGAGCACCTTGGCAGCTCCGTGC
GTAAGCTGGTGGCGCTCTACGACACCGTGGGCCAGATGAAGAACTCACAG
GAAGAGCAGTATGCCAGCGAGGATTCCCCCGCAAGCTTTCTAGACCAT
BO16376.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msd1-RA | 417 | CG13914-PA | 1..414 | 17..430 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msd1-RA | 528 | CG13914-RA | 34..452 | 12..430 | 2080 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1331873..1332250 | 53..430 | 1890 | 100 | Plus |
3L | 28110227 | 3L | 1331777..1331818 | 12..53 | 195 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:56:43 has no hits.
BO16376.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:14 Download gff for
BO16376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13914-RA | 1..417 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:40 Download gff for
BO16376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13914-RA | 42..472 | 3..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:49:10 Download gff for
BO16376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msd1-RA | 39..452 | 17..432 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:14 Download gff for
BO16376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13914-RA | 42..472 | 3..437 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:47 Download gff for
BO16376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
msd1-RA | 39..452 | 17..432 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:47 Download gff for
BO16376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1331782..1331818 | 17..53 | 100 | -> | Plus |
3L | 1331874..1332250 | 54..432 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:49:10 Download gff for
BO16376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1331782..1331818 | 17..53 | 100 | -> | Plus |
arm_3L | 1331874..1332250 | 54..432 | 99 | | Plus |
BO16376.pep Sequence
Translation from 16 to 448
> BO16376.pep
MSDAVDKMLAGMAANRQTMNRQLAKIDEIMERSNNTLLHIESNSKAFSQN
VALSETQKMYNLRPEAEMTLSKILENFKLLMSSSDQREETYSALEGCLAY
RHRVEHLGSSVRKLVALYDTVGQMKNSQEEQYASEDSPASFLDH
BO16376.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
msd1-PA | 138 | CG13914-PA | 1..138 | 1..138 | 685 | 100 | Plus |