Clone BO16376 Report

Search the DGRC for BO16376

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:76
Vector:pDNR-Dual
Associated Gene/Transcriptmsd1-RA
Protein status:BO16376.pep: validated full length
Sequenced Size:448

Clone Sequence Records

BO16376.3prime Sequence

446 bp (446 high quality bases) assembled on 2006-10-13

> BO16376.3prime
ATGGTCTAGAAAGCTTGCGGGGGAATCCTCGCTGGCATACTGCTCTTCCT
GTGAGTTCTTCATCTGGCCCACGGTGTCGTAGAGCGCCACCAGCTTACGC
ACGGAGCTGCCAAGGTGCTCCACGCGATGCCTGTAGGCCAGGCAGCCCTC
CAGAGCGCTGTATGTCTCCTCCCGCTGGTCACTGCTAGACATGAGCAGCT
TGAAGTTCTCCAGGATCTTGGACAGGGTCATCTCAGCCTCCGGCCTGAGG
TTGTACATCTTCTGGGTCTCCGACAAAGCCACATTCTGACTGAATGCCTT
GCTGTTGGACTCGATGTGGAGCAATGTGTTGTTCGACCGCTCCATTATCT
CGTCTATCTTAGCCAGCTGGCGGTTCATGGTCTGCCGATTGGCCGCCATT
CCCGCCAACATTTTGTCCACAGCGTCTGACATGTCGACTGATAACT

BO16376.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13914-PA 417 CG13914-RA 1..414 432..19 2070 100 Minus
CG13914-PB 417 CG13914-RB 1..414 432..19 2070 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
msd1-RA 528 CG13914-RA 34..452 437..19 2080 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:44:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1331873..1332250 396..19 1890 100 Minus
3L 28110227 3L 1331777..1331818 437..396 195 97.6 Minus
Blast to na_te.dros performed on 2015-02-02 17:44:27 has no hits.

BO16376.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:03 Download gff for BO16376.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13914-PB 1..417 18..432 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:24 Download gff for BO16376.3prime
Subject Subject Range Query Range Percent Splice Strand
msd1-RA 27..457 12..446 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:01 Download gff for BO16376.3prime
Subject Subject Range Query Range Percent Splice Strand
msd1-RA 27..457 12..446 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:01 Download gff for BO16376.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1331874..1332255 12..395 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:24 Download gff for BO16376.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1331874..1332255 12..395 99   Minus

BO16376.5prime Sequence

446 bp (446 high quality bases) assembled on 2006-10-13

> BO16376.5prime
GAAGTTATCAGTCGACATGTCAGACGCTGTGGACAAAATGTTGGCGGGAA
TGGCGGCCAATCGGCAGACCATGAACCGCCAGCTGGCTAAGATAGACGAG
ATAATGGAGCGGTCGAACAACACATTGCTCCACATCGAGTCCAACAGCAA
GGCATTCAGTCAGAATGTGGCTTTGTCGGAGACCCAGAAGATGTACAACC
TCAGGCCGGAGGCTGAGATGACCCTGTCCAAGATCCTGGAGAACTTCAAG
CTGCTCATGTCTAGCAGTGACCAGCGGGAGGAGACATACAGCGCTCTGGA
GGGCTGCCTGGCCTACAGGCATCGCGTGGAGCACCTTGGCAGCTCCGTGC
GTAAGCTGGTGGCGCTCTACGACACCGTGGGCCAGATGAAGAACTCACAG
GAAGAGCAGTATGCCAGCGAGGATTCCCCCGCAAGCTTTCTAGACC

BO16376.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13914-PA 417 CG13914-RA 1..414 17..430 2070 100 Plus
CG13914-PB 417 CG13914-RB 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
msd1-RA 528 CG13914-RA 34..452 12..430 2080 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1331873..1332250 53..430 1890 100 Plus
3L 28110227 3L 1331777..1331818 12..53 195 97.6 Plus
Blast to na_te.dros performed on 2015-02-02 17:44:50 has no hits.

BO16376.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:04 Download gff for BO16376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13914-PB 1..417 17..431 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:27 Download gff for BO16376.5prime
Subject Subject Range Query Range Percent Splice Strand
msd1-RA 27..457 3..437 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:04 Download gff for BO16376.5prime
Subject Subject Range Query Range Percent Splice Strand
msd1-RA 27..457 3..437 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:04 Download gff for BO16376.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1331874..1332255 54..437 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:27 Download gff for BO16376.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1331874..1332255 54..437 99   Plus

BO16376.complete Sequence

448 bp assembled on 2006-10-11

GenBank Submission: FJ633802

> BO16376.complete
GAAGTTATCAGTCGACATGTCAGACGCTGTGGACAAAATGTTGGCGGGAA
TGGCGGCCAATCGGCAGACCATGAACCGCCAGCTGGCTAAGATAGACGAG
ATAATGGAGCGGTCGAACAACACATTGCTCCACATCGAGTCCAACAGCAA
GGCATTCAGTCAGAATGTGGCTTTGTCGGAGACCCAGAAGATGTACAACC
TCAGGCCGGAGGCTGAGATGACCCTGTCCAAGATCCTGGAGAACTTCAAG
CTGCTCATGTCTAGCAGTGACCAGCGGGAGGAGACATACAGCGCTCTGGA
GGGCTGCCTGGCCTACAGGCATCGCGTGGAGCACCTTGGCAGCTCCGTGC
GTAAGCTGGTGGCGCTCTACGACACCGTGGGCCAGATGAAGAACTCACAG
GAAGAGCAGTATGCCAGCGAGGATTCCCCCGCAAGCTTTCTAGACCAT

BO16376.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
msd1-RA 417 CG13914-PA 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:45
Subject Length Description Subject Range Query Range Score Percent Strand
msd1-RA 528 CG13914-RA 34..452 12..430 2080 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1331873..1332250 53..430 1890 100 Plus
3L 28110227 3L 1331777..1331818 12..53 195 97.6 Plus
Blast to na_te.dros performed on 2014-11-27 10:56:43 has no hits.

BO16376.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:14 Download gff for BO16376.complete
Subject Subject Range Query Range Percent Splice Strand
CG13914-RA 1..417 17..431 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:40 Download gff for BO16376.complete
Subject Subject Range Query Range Percent Splice Strand
CG13914-RA 42..472 3..437 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:49:10 Download gff for BO16376.complete
Subject Subject Range Query Range Percent Splice Strand
msd1-RA 39..452 17..432 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:14 Download gff for BO16376.complete
Subject Subject Range Query Range Percent Splice Strand
CG13914-RA 42..472 3..437 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:47 Download gff for BO16376.complete
Subject Subject Range Query Range Percent Splice Strand
msd1-RA 39..452 17..432 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:47 Download gff for BO16376.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1331782..1331818 17..53 100 -> Plus
3L 1331874..1332250 54..432 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:49:10 Download gff for BO16376.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1331782..1331818 17..53 100 -> Plus
arm_3L 1331874..1332250 54..432 99   Plus

BO16376.pep Sequence

Translation from 16 to 448

> BO16376.pep
MSDAVDKMLAGMAANRQTMNRQLAKIDEIMERSNNTLLHIESNSKAFSQN
VALSETQKMYNLRPEAEMTLSKILENFKLLMSSSDQREETYSALEGCLAY
RHRVEHLGSSVRKLVALYDTVGQMKNSQEEQYASEDSPASFLDH

BO16376.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:13
Subject Length Description Subject Range Query Range Score Percent Strand
msd1-PA 138 CG13914-PA 1..138 1..138 685 100 Plus