Clone Sequence Records
BO16377.3prime Sequence
293 bp (293 high quality bases) assembled on 2006-10-13
> BO16377.3prime
ATGGTCTAGAAAGCTTGCCACGGGAATCACACGCCTCTGTAGCCAAGAAC
GTTTGCGTGGGAGTCGAATTGTGGAAGTTAAATCGTCGTCCTTGCGGCCG
GACTCTTGCTTGATCACCTGATCGTTAATCTTCTCCGGAGCGAACTGACC
ATTGAACTTGGCACTCCACGTGCCGTCTTGGGCGAACACGGCTGGGCAAC
CGGCAGCCAATTTTCCAGGCTCCGACGGACTGATCGGGGACTTGCGAATC
AAAGAGGATACAAAGCGTTTCATACCCATGTCGACTGATAACT
BO16377.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16741-PA | 264 | CG16741-RA | 1..260 | 279..20 | 1275 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16741-RA | 549 | CG16741-RA | 91..350 | 279..20 | 1285 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20347131..20347390 | 279..20 | 1285 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:58:05 has no hits.
BO16377.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:05 Download gff for
BO16377.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16741-PA | 1..264 | 18..279 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:08:52 Download gff for
BO16377.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16741-RA | 91..350 | 20..279 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:15 Download gff for
BO16377.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16741-RA | 91..350 | 20..279 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:15 Download gff for
BO16377.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20347131..20347390 | 20..279 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:08:52 Download gff for
BO16377.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16234636..16234895 | 20..279 | 99 | | Minus |
BO16377.5prime Sequence
293 bp (293 high quality bases) assembled on 2006-10-13
> BO16377.5prime
GAAGTTATCAGTCGACATGGGTATGAAACGCTTTGTATCCTCTTTGATTC
GCAAGTCCCCGATCAGTCCGTCGGAGCCTGGAAAATTGGCTGCCGGTTGC
CCAGCCGTGTTCGCCCAAGACGGCACGTGGAGTGCCAAGTTCAATGGTCA
GTTCGCTCCGGAGAAGATTAACGATCAGGTGATCAAGCAAGAGTCCGGCC
GCAAGGACGACGATTTAACTTCCACAATTCGACTCCCACGCAAACGTTCT
TGGCTACAGAGGCGTGTGATTCCCGTGGCAAGCTTTCTAGACC
BO16377.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:06:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16741-PA | 264 | CG16741-RA | 1..260 | 17..276 | 1275 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:49:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16741-RA | 549 | CG16741-RA | 91..350 | 17..276 | 1285 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20347131..20347390 | 17..276 | 1285 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:49:40 has no hits.
BO16377.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:06 Download gff for
BO16377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16741-PA | 1..264 | 17..278 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:06:49 Download gff for
BO16377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16741-RA | 91..350 | 17..276 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:46 Download gff for
BO16377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16741-RA | 91..350 | 17..276 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:46 Download gff for
BO16377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20347131..20347390 | 17..276 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:06:49 Download gff for
BO16377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16234636..16234895 | 17..276 | 99 | | Plus |
BO16377.complete Sequence
295 bp assembled on 2006-10-11
GenBank Submission: FJ633803
> BO16377.complete
GAAGTTATCAGTCGACATGGGTATGAAACGCTTTGTATCCTCTTTGATTC
GCAAGTCCCCGATCAGTCCGTCGGAGCCTGGAAAATTGGCTGCCGGTTGC
CCAGCCGTGTTCGCCCAAGACGGCACGTGGAGTGCCAAGTTCAATGGTCA
GTTCGCTCCGGAGAAGATTAACGATCAGGTGATCAAGCAAGAGTCCGGCC
GCAAGGACGACGATTTAACTTCCACAATTCGACTCCCACGCAAACGTTCT
TGGCTACAGAGGCGTGTGATTCCCGTGGCAAGCTTTCTAGACCAT
BO16377.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16741-RA | 264 | CG16741-PA | 1..260 | 17..276 | 1285 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16741-RA | 549 | CG16741-RA | 91..350 | 17..276 | 1285 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:50:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20347131..20347390 | 17..276 | 1285 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:50:45 has no hits.
BO16377.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:16 Download gff for
BO16377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16741-RA | 1..264 | 17..278 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:30 Download gff for
BO16377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16741-RA | 96..355 | 17..276 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:56 Download gff for
BO16377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16741-RA | 91..350 | 17..279 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:17 Download gff for
BO16377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16741-RA | 96..355 | 17..276 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:25 Download gff for
BO16377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16741-RA | 91..350 | 17..279 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:25 Download gff for
BO16377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20347131..20347390 | 17..279 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:56 Download gff for
BO16377.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16234636..16234895 | 17..279 | 98 | | Plus |
BO16377.pep Sequence
Translation from 16 to 295
> BO16377.pep
MGMKRFVSSLIRKSPISPSEPGKLAAGCPAVFAQDGTWSAKFNGQFAPEK
INDQVIKQESGRKDDDLTSTIRLPRKRSWLQRRVIPVASFLDH
BO16377.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16741-PA | 87 | CG16741-PA | 1..87 | 1..87 | 451 | 100 | Plus |
