Clone BO16380 Report

Search the DGRC for BO16380

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG32235-RA
Protein status:BO16380.pep: validated full length
Sequenced Size:283

Clone Sequence Records

BO16380.3prime Sequence

281 bp (281 high quality bases) assembled on 2006-10-13

> BO16380.3prime
ATGGTCTAGAAAGCTTGCGCTCTCTAATGCCAAGATCAATCCTCTAAGCC
GATGCCCGGCAGTTGTGGCAGTTAATAAATATTTGTCACGCATGGCTCTG
GATGCACTGCAGCTGGAAAGCCCACACCCAGGTACCTCGATCCCCGAAGG
ACCTGTCGGTGGCACCTGCATTGCGTTGTCCGGTGCGCTTAGGCACGTGA
CAGGCGGATGACCTGCATACGGGAACCTGAATCCTGCTTTTCCCGGCCTG
CGTTGATGGTTTCGCATGTCGACTGATAACT

BO16380.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG32235-PA 252 CG32235-RA 1..249 267..19 1245 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG32235-RA 597 CG32235-RA 308..557 268..19 1250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4859850..4860099 19..268 1250 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:00:58 has no hits.

BO16380.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:08 Download gff for BO16380.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32235-PA 1..252 15..267 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:17 Download gff for BO16380.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32235-RA 304..560 15..275 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:23 Download gff for BO16380.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32235-RA 304..560 15..275 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:23 Download gff for BO16380.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4859847..4860103 15..275 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:17 Download gff for BO16380.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4859847..4860103 15..275 98   Plus

BO16380.5prime Sequence

281 bp (281 high quality bases) assembled on 2006-10-13

> BO16380.5prime
GAAGTTATCAGTCGACATGCGAAACCATCAACGCAGGCCGGGAAAAGCAG
GATTCAGGTTCCCGTATGCAGGTCATCCGCCTGTCACGTGCCTAAGCGCA
CCGGACAACGCAATGCAGGTGCCACCGACAGGTCCTTCGGGGATCGAGGT
ACCTGGGTGTGGGCTTTCCAGCTGCAGTGCATCCAGAGCCATGCGTGACA
AATATTTATTAACTGCCACAACTGCCGGGCATCGGCTTAGAGGATTGATC
TTGGCATTAGAGAGCGCAAGCTTTCTAGACC

BO16380.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG32235-PA 252 CG32235-RA 1..249 17..265 1245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:15:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG32235-RA 597 CG32235-RA 308..557 16..265 1250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4859850..4860099 265..16 1250 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:14:57 has no hits.

BO16380.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:09 Download gff for BO16380.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32235-PA 1..252 17..269 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:12 Download gff for BO16380.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32235-RA 304..560 9..269 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:52 Download gff for BO16380.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32235-RA 304..560 9..269 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:52 Download gff for BO16380.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4859847..4860103 9..269 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:12 Download gff for BO16380.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4859847..4860103 9..269 98   Minus

BO16380.complete Sequence

283 bp assembled on 2006-10-11

GenBank Submission: FJ633805

> BO16380.complete
GAAGTTATCAGTCGACATGCGAAACCATCAACGCAGGCCGGGAAAAGCAG
GATTCAGGTTCCCGTATGCAGGTCATCCGCCTGTCACGTGCCTAAGCGCA
CCGGACAACGCAATGCAGGTGCCACCGACAGGTCCTTCGGGGATCGAGGT
ACCTGGGTGTGGGCTTTCCAGCTGCAGTGCATCCAGAGCCATGCGTGACA
AATATTTATTAACTGCCACAACTGCCGGGCATCGGCTTAGAGGATTGATC
TTGGCATTAGAGAGCGCAAGCTTTCTAGACCAT

BO16380.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG32235-RA 252 CG32235-PA 1..249 17..265 1245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG32235-RA 597 CG32235-RA 308..557 16..265 1250 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4859850..4860099 265..16 1250 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:12:46 has no hits.

BO16380.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:51 Download gff for BO16380.complete
Subject Subject Range Query Range Percent Splice Strand
CG32235-RA 1..252 17..269 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:28 Download gff for BO16380.complete
Subject Subject Range Query Range Percent Splice Strand
CG32235-RA 304..560 9..269 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:10 Download gff for BO16380.complete
Subject Subject Range Query Range Percent Splice Strand
CG32235-RA 309..557 17..267 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:51 Download gff for BO16380.complete
Subject Subject Range Query Range Percent Splice Strand
CG32235-RA 304..560 9..269 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:55 Download gff for BO16380.complete
Subject Subject Range Query Range Percent Splice Strand
CG32235-RA 309..557 17..267 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:55 Download gff for BO16380.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4859848..4860098 17..267 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:10 Download gff for BO16380.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4859848..4860098 17..267 99   Minus

BO16380.pep Sequence

Translation from 16 to 283

> BO16380.pep
MRNHQRRPGKAGFRFPYAGHPPVTCLSAPDNAMQVPPTGPSGIEVPGCGL
SSCSASRAMRDKYLLTATTAGHRLRGLILALESASFLDH

BO16380.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG32235-PA 83 CG32235-PA 1..83 1..83 444 100 Plus