Clone Sequence Records
BO16380.3prime Sequence
281 bp (281 high quality bases) assembled on 2006-10-13
> BO16380.3prime
ATGGTCTAGAAAGCTTGCGCTCTCTAATGCCAAGATCAATCCTCTAAGCC
GATGCCCGGCAGTTGTGGCAGTTAATAAATATTTGTCACGCATGGCTCTG
GATGCACTGCAGCTGGAAAGCCCACACCCAGGTACCTCGATCCCCGAAGG
ACCTGTCGGTGGCACCTGCATTGCGTTGTCCGGTGCGCTTAGGCACGTGA
CAGGCGGATGACCTGCATACGGGAACCTGAATCCTGCTTTTCCCGGCCTG
CGTTGATGGTTTCGCATGTCGACTGATAACT
BO16380.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32235-PA | 252 | CG32235-RA | 1..249 | 267..19 | 1245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32235-RA | 597 | CG32235-RA | 308..557 | 268..19 | 1250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4859850..4860099 | 19..268 | 1250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:00:58 has no hits.
BO16380.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:08 Download gff for
BO16380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32235-PA | 1..252 | 15..267 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:17 Download gff for
BO16380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32235-RA | 304..560 | 15..275 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:23 Download gff for
BO16380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32235-RA | 304..560 | 15..275 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:23 Download gff for
BO16380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4859847..4860103 | 15..275 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:17 Download gff for
BO16380.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4859847..4860103 | 15..275 | 98 | | Plus |
BO16380.5prime Sequence
281 bp (281 high quality bases) assembled on 2006-10-13
> BO16380.5prime
GAAGTTATCAGTCGACATGCGAAACCATCAACGCAGGCCGGGAAAAGCAG
GATTCAGGTTCCCGTATGCAGGTCATCCGCCTGTCACGTGCCTAAGCGCA
CCGGACAACGCAATGCAGGTGCCACCGACAGGTCCTTCGGGGATCGAGGT
ACCTGGGTGTGGGCTTTCCAGCTGCAGTGCATCCAGAGCCATGCGTGACA
AATATTTATTAACTGCCACAACTGCCGGGCATCGGCTTAGAGGATTGATC
TTGGCATTAGAGAGCGCAAGCTTTCTAGACC
BO16380.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32235-PA | 252 | CG32235-RA | 1..249 | 17..265 | 1245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:15:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32235-RA | 597 | CG32235-RA | 308..557 | 16..265 | 1250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4859850..4860099 | 265..16 | 1250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:14:57 has no hits.
BO16380.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:09 Download gff for
BO16380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32235-PA | 1..252 | 17..269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:12 Download gff for
BO16380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32235-RA | 304..560 | 9..269 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:55:52 Download gff for
BO16380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32235-RA | 304..560 | 9..269 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:55:52 Download gff for
BO16380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4859847..4860103 | 9..269 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:12 Download gff for
BO16380.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4859847..4860103 | 9..269 | 98 | | Minus |
BO16380.complete Sequence
283 bp assembled on 2006-10-11
GenBank Submission: FJ633805
> BO16380.complete
GAAGTTATCAGTCGACATGCGAAACCATCAACGCAGGCCGGGAAAAGCAG
GATTCAGGTTCCCGTATGCAGGTCATCCGCCTGTCACGTGCCTAAGCGCA
CCGGACAACGCAATGCAGGTGCCACCGACAGGTCCTTCGGGGATCGAGGT
ACCTGGGTGTGGGCTTTCCAGCTGCAGTGCATCCAGAGCCATGCGTGACA
AATATTTATTAACTGCCACAACTGCCGGGCATCGGCTTAGAGGATTGATC
TTGGCATTAGAGAGCGCAAGCTTTCTAGACCAT
BO16380.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:12:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32235-RA | 252 | CG32235-PA | 1..249 | 17..265 | 1245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:12:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32235-RA | 597 | CG32235-RA | 308..557 | 16..265 | 1250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:12:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4859850..4860099 | 265..16 | 1250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:12:46 has no hits.
BO16380.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:51 Download gff for
BO16380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32235-RA | 1..252 | 17..269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:28 Download gff for
BO16380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32235-RA | 304..560 | 9..269 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:10 Download gff for
BO16380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32235-RA | 309..557 | 17..267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:51 Download gff for
BO16380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32235-RA | 304..560 | 9..269 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:20:55 Download gff for
BO16380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32235-RA | 309..557 | 17..267 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:20:55 Download gff for
BO16380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4859848..4860098 | 17..267 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:10 Download gff for
BO16380.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4859848..4860098 | 17..267 | 99 | | Minus |
BO16380.pep Sequence
Translation from 16 to 283
> BO16380.pep
MRNHQRRPGKAGFRFPYAGHPPVTCLSAPDNAMQVPPTGPSGIEVPGCGL
SSCSASRAMRDKYLLTATTAGHRLRGLILALESASFLDH
BO16380.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32235-PA | 83 | CG32235-PA | 1..83 | 1..83 | 444 | 100 | Plus |