Clone BO16385 Report

Search the DGRC for BO16385

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG7220-RA
Protein status:BO16385.pep: validated full length
Sequenced Size:496

Clone Sequence Records

BO16385.3prime Sequence

494 bp (494 high quality bases) assembled on 2006-10-13

> BO16385.3prime
ATGGTCTAGAAAGCTTGCAACAGAATCATCGTGGTACCACCATTTAGTCT
TTTTAGGATTCTTATTACAGGTTTTTACGTATATCGTGTTGTCCGGCGGA
CGCTTCTTTTCGCGACAACTACTCAACATGGAGGCTATGCTAAGGCACAC
GGACTGCACGGACAGCGCCGGGGACCAGTCCTCGGTCAGAATGGATAGGC
AGATGTGTCCGTTGCTGTAGACATGCGGATGCACCGGTATATTGGTGCCG
ATGAAGGTCACCTCTGGCGAATCGAACGGATATTTATTGTTGAATTTGAA
AAGTAGCTGGAAGTCCTCGCCCTCGTAAAGTGTGCCCTCGAAACCTTTAA
TGTTTATTTTCCATTCGGATAAATTTTGTTGTACGCTCTCGGTGTCGATG
GTTACGCCTGGTGGCGGCTCCTTGATCAGGGACATCAGCTCTTTGTGTAG
GCGGCGCTCGCTTGGCGACTTCGAAGACATGTCGACTGATAACT

BO16385.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7220-PD 465 CG7220-RD 1..462 480..19 2310 100 Minus
CG7220-PA 465 CG7220-RA 1..462 480..19 2310 100 Minus
CG7220-PC 465 CG7220-RC 1..462 480..19 2310 100 Minus
CG7220-PB 420 CG7220-RB 1..417 435..19 2085 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7220-RC 1672 CG7220-RC 208..669 480..19 2310 100 Minus
CG7220-RA 1771 CG7220-RA 307..768 480..19 2310 100 Minus
CG7220-RD 1742 CG7220-RD 278..739 480..19 2310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10737058..10737291 263..30 1170 100 Minus
2R 25286936 2R 10736893..10736997 364..260 525 100 Minus
2R 25286936 2R 10736655..10736748 458..365 470 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:38:27 has no hits.

BO16385.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:14 Download gff for BO16385.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7220-PC 1..465 18..480 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:28 Download gff for BO16385.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7220-RD 306..778 11..487 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:40:20 Download gff for BO16385.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7220-RD 272..744 11..487 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:40:20 Download gff for BO16385.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10736657..10736748 365..456 100 -> Minus
2R 10736893..10736995 262..364 100 -> Minus
2R 10737060..10737291 30..261 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:28 Download gff for BO16385.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6624162..6624253 365..456 100 -> Minus
arm_2R 6624398..6624500 262..364 100 -> Minus
arm_2R 6624565..6624796 30..261 100   Minus

BO16385.5prime Sequence

494 bp (494 high quality bases) assembled on 2006-10-13

> BO16385.5prime
GAAGTTATCAGTCGACATGTCTTCGAAGTCGCCAAGCGAGCGCCGCCTAC
ACAAAGAGCTGATGTCCCTGATCAAGGAGCCGCCACCAGGCGTAACCATC
GACACCGAGAGCGTACAACAAAATTTATCCGAATGGAAAATAAACATTAA
AGGTTTCGAGGGCACACTTTACGAGGGCGAGGACTTCCAGCTACTTTTCA
AATTCAACAATAAATATCCGTTCGATTCGCCAGAGGTGACCTTCATCGGC
ACCAATATACCGGTGCATCCGCATGTCTACAGCAACGGACACATCTGCCT
ATCCATTCTGACCGAGGACTGGTCCCCGGCGCTGTCCGTGCAGTCCGTGT
GCCTTAGCATAGCCTCCATGTTGAGTAGTTGTCGCGAAAAGAAGCGTCCG
CCGGACAACACGATATACGTAAAAACCTGTAATAAGAATCCTAAAAAGAC
TAAATGGTGGTACCACGATGATTCTGTTGCAAGCTTTCTAGACC

BO16385.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7220-PD 465 CG7220-RD 1..462 17..478 2310 100 Plus
CG7220-PA 465 CG7220-RA 1..462 17..478 2310 100 Plus
CG7220-PC 465 CG7220-RC 1..462 17..478 2310 100 Plus
CG7220-PB 420 CG7220-RB 1..417 62..478 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7220-RC 1672 CG7220-RC 208..669 17..478 2310 100 Plus
CG7220-RA 1771 CG7220-RA 307..768 17..478 2310 100 Plus
CG7220-RD 1742 CG7220-RD 278..739 17..478 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10737058..10737291 234..467 1170 100 Plus
2R 25286936 2R 10736893..10736997 133..237 525 100 Plus
2R 25286936 2R 10736655..10736748 39..132 470 100 Plus
Blast to na_te.dros performed on 2015-02-08 11:39:52 has no hits.

BO16385.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:15 Download gff for BO16385.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7220-PC 1..465 17..479 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:54 Download gff for BO16385.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7220-RD 306..778 10..486 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:20 Download gff for BO16385.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7220-RD 272..744 10..486 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:20 Download gff for BO16385.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10736657..10736748 41..132 100 -> Plus
2R 10736893..10736995 133..235 100 -> Plus
2R 10737060..10737291 236..467 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:54 Download gff for BO16385.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6624162..6624253 41..132 100 -> Plus
arm_2R 6624398..6624500 133..235 100 -> Plus
arm_2R 6624565..6624796 236..467 100   Plus

BO16385.complete Sequence

496 bp assembled on 2006-10-11

GenBank Submission: FJ633806

> BO16385.complete
GAAGTTATCAGTCGACATGTCTTCGAAGTCGCCAAGCGAGCGCCGCCTAC
ACAAAGAGCTGATGTCCCTGATCAAGGAGCCGCCACCAGGCGTAACCATC
GACACCGAGAGCGTACAACAAAATTTATCCGAATGGAAAATAAACATTAA
AGGTTTCGAGGGCACACTTTACGAGGGCGAGGACTTCCAGCTACTTTTCA
AATTCAACAATAAATATCCGTTCGATTCGCCAGAGGTGACCTTCATCGGC
ACCAATATACCGGTGCATCCGCATGTCTACAGCAACGGACACATCTGCCT
ATCCATTCTGACCGAGGACTGGTCCCCGGCGCTGTCCGTGCAGTCCGTGT
GCCTTAGCATAGCCTCCATGTTGAGTAGTTGTCGCGAAAAGAAGCGTCCG
CCGGACAACACGATATACGTAAAAACCTGTAATAAGAATCCTAAAAAGAC
TAAATGGTGGTACCACGATGATTCTGTTGCAAGCTTTCTAGACCAT

BO16385.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7220-RC 465 CG7220-PC 1..462 17..478 2310 100 Plus
CG7220-RA 465 CG7220-PA 1..462 17..478 2310 100 Plus
CG7220-RD 465 CG7220-PD 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7220-RC 1672 CG7220-RC 208..669 17..478 2310 100 Plus
CG7220-RA 1771 CG7220-RA 307..768 17..478 2310 100 Plus
CG7220-RD 1742 CG7220-RD 278..739 17..478 2310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10737058..10737291 234..467 1170 100 Plus
2R 25286936 2R 10736893..10736997 133..237 525 100 Plus
2R 25286936 2R 10736655..10736748 39..132 470 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:17:08 has no hits.

BO16385.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:21 Download gff for BO16385.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RC 1..465 17..479 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:29 Download gff for BO16385.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RD 306..778 10..486 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:01 Download gff for BO16385.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RD 312..773 17..480 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:21 Download gff for BO16385.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RD 306..778 10..486 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:14 Download gff for BO16385.complete
Subject Subject Range Query Range Percent Splice Strand
CG7220-RD 278..739 17..480 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:14 Download gff for BO16385.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10731773..10731796 17..40 100 -> Plus
2R 10736657..10736748 41..132 100 -> Plus
2R 10736893..10736995 133..235 100 -> Plus
2R 10737060..10737291 236..467 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:01 Download gff for BO16385.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6624565..6624796 236..467 100   Plus
arm_2R 6619278..6619301 17..40 100 -> Plus
arm_2R 6624162..6624253 41..132 100 -> Plus
arm_2R 6624398..6624500 133..235 100 -> Plus

BO16385.pep Sequence

Translation from 16 to 496

> BO16385.pep
MSSKSPSERRLHKELMSLIKEPPPGVTIDTESVQQNLSEWKINIKGFEGT
LYEGEDFQLLFKFNNKYPFDSPEVTFIGTNIPVHPHVYSNGHICLSILTE
DWSPALSVQSVCLSIASMLSSCREKKRPPDNTIYVKTCNKNPKKTKWWYH
DDSVASFLDH

BO16385.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7220-PC 154 CG7220-PC 1..154 1..154 836 100 Plus
CG7220-PA 154 CG7220-PA 1..154 1..154 836 100 Plus
CG7220-PD 154 CG7220-PD 1..154 1..154 836 100 Plus
CG7220-PE 190 CG7220-PE 44..190 8..154 803 100 Plus
CG7220-PF 190 CG7220-PF 44..190 8..154 803 100 Plus