Clone Sequence Records
BO16385.3prime Sequence
494 bp (494 high quality bases) assembled on 2006-10-13
> BO16385.3prime
ATGGTCTAGAAAGCTTGCAACAGAATCATCGTGGTACCACCATTTAGTCT
TTTTAGGATTCTTATTACAGGTTTTTACGTATATCGTGTTGTCCGGCGGA
CGCTTCTTTTCGCGACAACTACTCAACATGGAGGCTATGCTAAGGCACAC
GGACTGCACGGACAGCGCCGGGGACCAGTCCTCGGTCAGAATGGATAGGC
AGATGTGTCCGTTGCTGTAGACATGCGGATGCACCGGTATATTGGTGCCG
ATGAAGGTCACCTCTGGCGAATCGAACGGATATTTATTGTTGAATTTGAA
AAGTAGCTGGAAGTCCTCGCCCTCGTAAAGTGTGCCCTCGAAACCTTTAA
TGTTTATTTTCCATTCGGATAAATTTTGTTGTACGCTCTCGGTGTCGATG
GTTACGCCTGGTGGCGGCTCCTTGATCAGGGACATCAGCTCTTTGTGTAG
GCGGCGCTCGCTTGGCGACTTCGAAGACATGTCGACTGATAACT
BO16385.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7220-PD | 465 | CG7220-RD | 1..462 | 480..19 | 2310 | 100 | Minus |
CG7220-PA | 465 | CG7220-RA | 1..462 | 480..19 | 2310 | 100 | Minus |
CG7220-PC | 465 | CG7220-RC | 1..462 | 480..19 | 2310 | 100 | Minus |
CG7220-PB | 420 | CG7220-RB | 1..417 | 435..19 | 2085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7220-RC | 1672 | CG7220-RC | 208..669 | 480..19 | 2310 | 100 | Minus |
CG7220-RA | 1771 | CG7220-RA | 307..768 | 480..19 | 2310 | 100 | Minus |
CG7220-RD | 1742 | CG7220-RD | 278..739 | 480..19 | 2310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10737058..10737291 | 263..30 | 1170 | 100 | Minus |
2R | 25286936 | 2R | 10736893..10736997 | 364..260 | 525 | 100 | Minus |
2R | 25286936 | 2R | 10736655..10736748 | 458..365 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:38:27 has no hits.
BO16385.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:14 Download gff for
BO16385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-PC | 1..465 | 18..480 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:28 Download gff for
BO16385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-RD | 306..778 | 11..487 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:40:20 Download gff for
BO16385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-RD | 272..744 | 11..487 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:40:20 Download gff for
BO16385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10736657..10736748 | 365..456 | 100 | -> | Minus |
2R | 10736893..10736995 | 262..364 | 100 | -> | Minus |
2R | 10737060..10737291 | 30..261 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:28 Download gff for
BO16385.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6624162..6624253 | 365..456 | 100 | -> | Minus |
arm_2R | 6624398..6624500 | 262..364 | 100 | -> | Minus |
arm_2R | 6624565..6624796 | 30..261 | 100 | | Minus |
BO16385.5prime Sequence
494 bp (494 high quality bases) assembled on 2006-10-13
> BO16385.5prime
GAAGTTATCAGTCGACATGTCTTCGAAGTCGCCAAGCGAGCGCCGCCTAC
ACAAAGAGCTGATGTCCCTGATCAAGGAGCCGCCACCAGGCGTAACCATC
GACACCGAGAGCGTACAACAAAATTTATCCGAATGGAAAATAAACATTAA
AGGTTTCGAGGGCACACTTTACGAGGGCGAGGACTTCCAGCTACTTTTCA
AATTCAACAATAAATATCCGTTCGATTCGCCAGAGGTGACCTTCATCGGC
ACCAATATACCGGTGCATCCGCATGTCTACAGCAACGGACACATCTGCCT
ATCCATTCTGACCGAGGACTGGTCCCCGGCGCTGTCCGTGCAGTCCGTGT
GCCTTAGCATAGCCTCCATGTTGAGTAGTTGTCGCGAAAAGAAGCGTCCG
CCGGACAACACGATATACGTAAAAACCTGTAATAAGAATCCTAAAAAGAC
TAAATGGTGGTACCACGATGATTCTGTTGCAAGCTTTCTAGACC
BO16385.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7220-PD | 465 | CG7220-RD | 1..462 | 17..478 | 2310 | 100 | Plus |
CG7220-PA | 465 | CG7220-RA | 1..462 | 17..478 | 2310 | 100 | Plus |
CG7220-PC | 465 | CG7220-RC | 1..462 | 17..478 | 2310 | 100 | Plus |
CG7220-PB | 420 | CG7220-RB | 1..417 | 62..478 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:39:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7220-RC | 1672 | CG7220-RC | 208..669 | 17..478 | 2310 | 100 | Plus |
CG7220-RA | 1771 | CG7220-RA | 307..768 | 17..478 | 2310 | 100 | Plus |
CG7220-RD | 1742 | CG7220-RD | 278..739 | 17..478 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10737058..10737291 | 234..467 | 1170 | 100 | Plus |
2R | 25286936 | 2R | 10736893..10736997 | 133..237 | 525 | 100 | Plus |
2R | 25286936 | 2R | 10736655..10736748 | 39..132 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:39:52 has no hits.
BO16385.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:15 Download gff for
BO16385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-PC | 1..465 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:35:54 Download gff for
BO16385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-RD | 306..778 | 10..486 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:20 Download gff for
BO16385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-RD | 272..744 | 10..486 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:20 Download gff for
BO16385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10736657..10736748 | 41..132 | 100 | -> | Plus |
2R | 10736893..10736995 | 133..235 | 100 | -> | Plus |
2R | 10737060..10737291 | 236..467 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:35:54 Download gff for
BO16385.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6624162..6624253 | 41..132 | 100 | -> | Plus |
arm_2R | 6624398..6624500 | 133..235 | 100 | -> | Plus |
arm_2R | 6624565..6624796 | 236..467 | 100 | | Plus |
BO16385.complete Sequence
496 bp assembled on 2006-10-11
GenBank Submission: FJ633806
> BO16385.complete
GAAGTTATCAGTCGACATGTCTTCGAAGTCGCCAAGCGAGCGCCGCCTAC
ACAAAGAGCTGATGTCCCTGATCAAGGAGCCGCCACCAGGCGTAACCATC
GACACCGAGAGCGTACAACAAAATTTATCCGAATGGAAAATAAACATTAA
AGGTTTCGAGGGCACACTTTACGAGGGCGAGGACTTCCAGCTACTTTTCA
AATTCAACAATAAATATCCGTTCGATTCGCCAGAGGTGACCTTCATCGGC
ACCAATATACCGGTGCATCCGCATGTCTACAGCAACGGACACATCTGCCT
ATCCATTCTGACCGAGGACTGGTCCCCGGCGCTGTCCGTGCAGTCCGTGT
GCCTTAGCATAGCCTCCATGTTGAGTAGTTGTCGCGAAAAGAAGCGTCCG
CCGGACAACACGATATACGTAAAAACCTGTAATAAGAATCCTAAAAAGAC
TAAATGGTGGTACCACGATGATTCTGTTGCAAGCTTTCTAGACCAT
BO16385.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:17:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7220-RC | 465 | CG7220-PC | 1..462 | 17..478 | 2310 | 100 | Plus |
CG7220-RA | 465 | CG7220-PA | 1..462 | 17..478 | 2310 | 100 | Plus |
CG7220-RD | 465 | CG7220-PD | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7220-RC | 1672 | CG7220-RC | 208..669 | 17..478 | 2310 | 100 | Plus |
CG7220-RA | 1771 | CG7220-RA | 307..768 | 17..478 | 2310 | 100 | Plus |
CG7220-RD | 1742 | CG7220-RD | 278..739 | 17..478 | 2310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:17:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10737058..10737291 | 234..467 | 1170 | 100 | Plus |
2R | 25286936 | 2R | 10736893..10736997 | 133..237 | 525 | 100 | Plus |
2R | 25286936 | 2R | 10736655..10736748 | 39..132 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:17:08 has no hits.
BO16385.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:21 Download gff for
BO16385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-RC | 1..465 | 17..479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:29 Download gff for
BO16385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-RD | 306..778 | 10..486 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:59:01 Download gff for
BO16385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-RD | 312..773 | 17..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:21 Download gff for
BO16385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-RD | 306..778 | 10..486 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:38:14 Download gff for
BO16385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7220-RD | 278..739 | 17..480 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:38:14 Download gff for
BO16385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10731773..10731796 | 17..40 | 100 | -> | Plus |
2R | 10736657..10736748 | 41..132 | 100 | -> | Plus |
2R | 10736893..10736995 | 133..235 | 100 | -> | Plus |
2R | 10737060..10737291 | 236..467 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:59:01 Download gff for
BO16385.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6624565..6624796 | 236..467 | 100 | | Plus |
arm_2R | 6619278..6619301 | 17..40 | 100 | -> | Plus |
arm_2R | 6624162..6624253 | 41..132 | 100 | -> | Plus |
arm_2R | 6624398..6624500 | 133..235 | 100 | -> | Plus |
BO16385.pep Sequence
Translation from 16 to 496
> BO16385.pep
MSSKSPSERRLHKELMSLIKEPPPGVTIDTESVQQNLSEWKINIKGFEGT
LYEGEDFQLLFKFNNKYPFDSPEVTFIGTNIPVHPHVYSNGHICLSILTE
DWSPALSVQSVCLSIASMLSSCREKKRPPDNTIYVKTCNKNPKKTKWWYH
DDSVASFLDH
BO16385.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7220-PC | 154 | CG7220-PC | 1..154 | 1..154 | 836 | 100 | Plus |
CG7220-PA | 154 | CG7220-PA | 1..154 | 1..154 | 836 | 100 | Plus |
CG7220-PD | 154 | CG7220-PD | 1..154 | 1..154 | 836 | 100 | Plus |
CG7220-PE | 190 | CG7220-PE | 44..190 | 8..154 | 803 | 100 | Plus |
CG7220-PF | 190 | CG7220-PF | 44..190 | 8..154 | 803 | 100 | Plus |