Clone Sequence Records
BO16386.3prime Sequence
689 bp (689 high quality bases) assembled on 2006-10-13
> BO16386.3prime
ATGGTCTAGAAAGCTTGCGATGTGGGATGGGCTATCGATTTCTCCTACTG
GCGTCATTGTCACATCTTTTTGGATCTCAGCGGCAGTACGGTAGGCCGTG
GGGTGGATTTTAAAGCCATAAAGCCTGGGCACAAACTTCTGCTTTGCCCG
CTTGGGCCTAGCATCCGGTTTCTCCATAAAGAACATATGAGGGAATCCAG
TGCCAAAGAAGGCTCCATCCAGATTCGAATGTCTCGACGCCTTGGGAATG
TACACATCATTGCACTTGGGGCAATAGATGCGTACCATATCCTCGCCAGG
ATTATCACTCAAACCAATGGGCAGCACCGGCTGGCTATGGCAGAATGCAC
GTGGACATGTCCCGAATTCGCCCTTGTTGTACTTGTCCAACATCAGTTCG
ATGCCCCGGTTGGTTAGGATAAAACGAGCGTGGATCAAGCCATACAGTTT
CTCTGCACTAGCCTCCAGTTCTGGTTCAGCGGGGTCTTCCGAGGCTGAAC
CCGGATTGAGATCCAGGATCACCTCCAAGGCACATTTGTAGTTCTTAACG
TTCGAATCAAGAAAGTTAAGGTTAAACTTGTCCTGGATATATTCCTCATC
CACCTCGCAAAAGAATTCGTTGCCACGCTGCTTGCAAAACCAATGAATCC
AGGAAGATTCGTCCGAATCGGTCATGTCGACTGATAACT
BO16386.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8914-PA | 660 | CkIIbeta2-RA | 1..656 | 675..20 | 3130 | 99 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:23:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta2-RA | 912 | CG8914-RA | 135..790 | 675..20 | 3190 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20289679..20290230 | 675..124 | 2670 | 98.9 | Minus |
2R | 25286936 | 2R | 20290319..20290428 | 129..20 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:23:54 has no hits.
BO16386.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:15 Download gff for
BO16386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8914-PA | 1..660 | 16..675 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:12 Download gff for
BO16386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta2-RA | 130..790 | 20..683 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:33 Download gff for
BO16386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta2-RA | 130..790 | 20..683 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:33 Download gff for
BO16386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20289674..20290229 | 125..683 | 98 | -> | Minus |
2R | 20290324..20290428 | 20..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:12 Download gff for
BO16386.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16177179..16177734 | 125..683 | 98 | -> | Minus |
arm_2R | 16177829..16177933 | 20..124 | 100 | | Minus |
BO16386.5prime Sequence
689 bp (689 high quality bases) assembled on 2006-10-13
> BO16386.5prime
GAAGTTATCAGTCGACATGACCGATTCGGACGAATCTTCCTGGATTCATT
GGTTTTGCAAGCAGCGTGGCAACGAATTCTTTTGCGAGGTGGATGAGGAA
TATATCCAGGACAAGTTTAACCTTAACTTTCTTGATTCGAACGTTAAGAA
CTACAAATGTGCCTTGGAGGTGATCCTGGATCTCAATCCGGGTTCAGCCT
CGGAAGACCCCGCTGAACCAGAACTGGAGGCTAGTGCAGAGAAACTGTAT
GGCTTGATCCACGCTCGTTTTATCCTAACCAACCGGGGCATCGAACTGAT
GTTGGACAAGTACAACAAGGGCGAATTCGGGACATGTCCACGTGCATTCT
GCCATAGCCAGCCGGTGCTGCCCATTGGTTTGAGTGATAATCCTGGCGAG
GATATGGTACGCATCTATTGCCCCAAGTGCAATGATGTGTACATTCCCAA
GGCGTCGAGACATTCGAATCTGGATGGAGCCTTCTTTGGCACTGGATTCC
CTCATATGTTCTTTATGGAGAAACCGGATGCTAGGCCCAAGCGGGCAAAG
CAGAAGTTTGTGCCCAGGCTTTATGGCTTTAAAATCCACCCCACGGCCTA
CCGTACTGCCGCTGAGATCCAAAAAGATGTGACAATGACGCCAGTAGGAG
AAATCGATAGCCCATCCCACATCGCAAGCTTTCTAGACC
BO16386.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8914-PA | 660 | CkIIbeta2-RA | 1..656 | 17..672 | 3130 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:04:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta2-RA | 912 | CG8914-RA | 135..790 | 17..672 | 3190 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20289679..20290230 | 17..568 | 2670 | 98.9 | Plus |
2R | 25286936 | 2R | 20290319..20290428 | 563..672 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:04:05 has no hits.
BO16386.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:16 Download gff for
BO16386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8914-PA | 1..660 | 17..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:19 Download gff for
BO16386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta2-RA | 130..790 | 9..672 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:03 Download gff for
BO16386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta2-RA | 130..790 | 9..672 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:03 Download gff for
BO16386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20289674..20290229 | 9..567 | 98 | -> | Plus |
2R | 20290324..20290428 | 568..672 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:19 Download gff for
BO16386.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16177829..16177933 | 568..672 | 100 | | Plus |
arm_2R | 16177179..16177734 | 9..567 | 98 | -> | Plus |
BO16386.complete Sequence
691 bp assembled on 2006-10-11
GenBank Submission: FJ633807
> BO16386.complete
GAAGTTATCAGTCGACATGACCGATTCGGACGAATCTTCCTGGATTCATT
GGTTTTGCAAGCAGCGTGGCAACGAATTCTTTTGCGAGGTGGATGAGGAA
TATATCCAGGACAAGTTTAACCTTAACTTTCTTGATTCGAACGTTAAGAA
CTACAAATGTGCCTTGGAGGTGATCCTGGATCTCAATCCGGGTTCAGCCT
CGGAAGACCCCGCTGAACCAGAACTGGAGGCTAGTGCAGAGAAACTGTAT
GGCTTGATCCACGCTCGTTTTATCCTAACCAACCGGGGCATCGAACTGAT
GTTGGACAAGTACAACAAGGGCGAATTCGGGACATGTCCACGTGCATTCT
GCCATAGCCAGCCGGTGCTGCCCATTGGTTTGAGTGATAATCCTGGCGAG
GATATGGTACGCATCTATTGCCCCAAGTGCAATGATGTGTACATTCCCAA
GGCGTCGAGACATTCGAATCTGGATGGAGCCTTCTTTGGCACTGGATTCC
CTCATATGTTCTTTATGGAGAAACCGGATGCTAGGCCCAAGCGGGCAAAG
CAGAAGTTTGTGCCCAGGCTTTATGGCTTTAAAATCCACCCCACGGCCTA
CCGTACTGCCGCTGAGATCCAAAAAGATGTGACAATGACGCCAGTAGGAG
AAATCGATAGCCCATCCCACATCGCAAGCTTTCTAGACCAT
BO16386.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta2-RA | 660 | CG8914-PA | 1..656 | 17..672 | 3190 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta2-RA | 912 | CG8914-RA | 135..790 | 17..672 | 3190 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20289679..20290230 | 17..568 | 2670 | 98.9 | Plus |
2R | 25286936 | 2R | 20290319..20290428 | 563..672 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:33:21 has no hits.
BO16386.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:17 Download gff for
BO16386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta2-RA | 1..660 | 17..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:22 Download gff for
BO16386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta2-RA | 48..708 | 9..672 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:43 Download gff for
BO16386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta2-RA | 135..790 | 17..675 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:17 Download gff for
BO16386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta2-RA | 48..708 | 9..672 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:42 Download gff for
BO16386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CkIIbeta2-RA | 135..790 | 17..675 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:42 Download gff for
BO16386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20289679..20290229 | 17..567 | 98 | -> | Plus |
2R | 20290324..20290428 | 568..675 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:43 Download gff for
BO16386.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16177184..16177734 | 17..567 | 98 | -> | Plus |
arm_2R | 16177829..16177933 | 568..675 | 97 | | Plus |
BO16386.pep Sequence
Translation from 16 to 691
> BO16386.pep
MTDSDESSWIHWFCKQRGNEFFCEVDEEYIQDKFNLNFLDSNVKNYKCAL
EVILDLNPGSASEDPAEPELEASAEKLYGLIHARFILTNRGIELMLDKYN
KGEFGTCPRAFCHSQPVLPIGLSDNPGEDMVRIYCPKCNDVYIPKASRHS
NLDGAFFGTGFPHMFFMEKPDARPKRAKQKFVPRLYGFKIHPTAYRTAAE
IQKDVTMTPVGEIDSPSHIASFLDH
BO16386.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CkIIbeta2-PA | 219 | CG8914-PA | 1..219 | 1..219 | 1194 | 100 | Plus |
CkIIbeta-PH | 215 | CG15224-PH | 1..198 | 1..196 | 695 | 64.1 | Plus |
CkIIbeta-PG | 215 | CG15224-PG | 1..198 | 1..196 | 695 | 64.1 | Plus |
CkIIbeta-PD | 215 | CG15224-PD | 1..198 | 1..196 | 695 | 64.1 | Plus |
CkIIbeta-PC | 215 | CG15224-PC | 1..198 | 1..196 | 695 | 64.1 | Plus |