Clone BO16386 Report

Search the DGRC for BO16386

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCkIIbeta2-RA
Protein status:BO16386.pep: validated full length
Sequenced Size:691

Clone Sequence Records

BO16386.3prime Sequence

689 bp (689 high quality bases) assembled on 2006-10-13

> BO16386.3prime
ATGGTCTAGAAAGCTTGCGATGTGGGATGGGCTATCGATTTCTCCTACTG
GCGTCATTGTCACATCTTTTTGGATCTCAGCGGCAGTACGGTAGGCCGTG
GGGTGGATTTTAAAGCCATAAAGCCTGGGCACAAACTTCTGCTTTGCCCG
CTTGGGCCTAGCATCCGGTTTCTCCATAAAGAACATATGAGGGAATCCAG
TGCCAAAGAAGGCTCCATCCAGATTCGAATGTCTCGACGCCTTGGGAATG
TACACATCATTGCACTTGGGGCAATAGATGCGTACCATATCCTCGCCAGG
ATTATCACTCAAACCAATGGGCAGCACCGGCTGGCTATGGCAGAATGCAC
GTGGACATGTCCCGAATTCGCCCTTGTTGTACTTGTCCAACATCAGTTCG
ATGCCCCGGTTGGTTAGGATAAAACGAGCGTGGATCAAGCCATACAGTTT
CTCTGCACTAGCCTCCAGTTCTGGTTCAGCGGGGTCTTCCGAGGCTGAAC
CCGGATTGAGATCCAGGATCACCTCCAAGGCACATTTGTAGTTCTTAACG
TTCGAATCAAGAAAGTTAAGGTTAAACTTGTCCTGGATATATTCCTCATC
CACCTCGCAAAAGAATTCGTTGCCACGCTGCTTGCAAAACCAATGAATCC
AGGAAGATTCGTCCGAATCGGTCATGTCGACTGATAACT

BO16386.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8914-PA 660 CkIIbeta2-RA 1..656 675..20 3130 99 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta2-RA 912 CG8914-RA 135..790 675..20 3190 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:23:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20289679..20290230 675..124 2670 98.9 Minus
2R 25286936 2R 20290319..20290428 129..20 550 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:23:54 has no hits.

BO16386.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:15 Download gff for BO16386.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8914-PA 1..660 16..675 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:12 Download gff for BO16386.3prime
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta2-RA 130..790 20..683 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:33 Download gff for BO16386.3prime
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta2-RA 130..790 20..683 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:33 Download gff for BO16386.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20289674..20290229 125..683 98 -> Minus
2R 20290324..20290428 20..124 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:12 Download gff for BO16386.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16177179..16177734 125..683 98 -> Minus
arm_2R 16177829..16177933 20..124 100   Minus

BO16386.5prime Sequence

689 bp (689 high quality bases) assembled on 2006-10-13

> BO16386.5prime
GAAGTTATCAGTCGACATGACCGATTCGGACGAATCTTCCTGGATTCATT
GGTTTTGCAAGCAGCGTGGCAACGAATTCTTTTGCGAGGTGGATGAGGAA
TATATCCAGGACAAGTTTAACCTTAACTTTCTTGATTCGAACGTTAAGAA
CTACAAATGTGCCTTGGAGGTGATCCTGGATCTCAATCCGGGTTCAGCCT
CGGAAGACCCCGCTGAACCAGAACTGGAGGCTAGTGCAGAGAAACTGTAT
GGCTTGATCCACGCTCGTTTTATCCTAACCAACCGGGGCATCGAACTGAT
GTTGGACAAGTACAACAAGGGCGAATTCGGGACATGTCCACGTGCATTCT
GCCATAGCCAGCCGGTGCTGCCCATTGGTTTGAGTGATAATCCTGGCGAG
GATATGGTACGCATCTATTGCCCCAAGTGCAATGATGTGTACATTCCCAA
GGCGTCGAGACATTCGAATCTGGATGGAGCCTTCTTTGGCACTGGATTCC
CTCATATGTTCTTTATGGAGAAACCGGATGCTAGGCCCAAGCGGGCAAAG
CAGAAGTTTGTGCCCAGGCTTTATGGCTTTAAAATCCACCCCACGGCCTA
CCGTACTGCCGCTGAGATCCAAAAAGATGTGACAATGACGCCAGTAGGAG
AAATCGATAGCCCATCCCACATCGCAAGCTTTCTAGACC

BO16386.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8914-PA 660 CkIIbeta2-RA 1..656 17..672 3130 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta2-RA 912 CG8914-RA 135..790 17..672 3190 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20289679..20290230 17..568 2670 98.9 Plus
2R 25286936 2R 20290319..20290428 563..672 550 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:04:05 has no hits.

BO16386.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:16 Download gff for BO16386.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8914-PA 1..660 17..676 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:19 Download gff for BO16386.5prime
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta2-RA 130..790 9..672 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:03 Download gff for BO16386.5prime
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta2-RA 130..790 9..672 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:03 Download gff for BO16386.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20289674..20290229 9..567 98 -> Plus
2R 20290324..20290428 568..672 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:19 Download gff for BO16386.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16177829..16177933 568..672 100   Plus
arm_2R 16177179..16177734 9..567 98 -> Plus

BO16386.complete Sequence

691 bp assembled on 2006-10-11

GenBank Submission: FJ633807

> BO16386.complete
GAAGTTATCAGTCGACATGACCGATTCGGACGAATCTTCCTGGATTCATT
GGTTTTGCAAGCAGCGTGGCAACGAATTCTTTTGCGAGGTGGATGAGGAA
TATATCCAGGACAAGTTTAACCTTAACTTTCTTGATTCGAACGTTAAGAA
CTACAAATGTGCCTTGGAGGTGATCCTGGATCTCAATCCGGGTTCAGCCT
CGGAAGACCCCGCTGAACCAGAACTGGAGGCTAGTGCAGAGAAACTGTAT
GGCTTGATCCACGCTCGTTTTATCCTAACCAACCGGGGCATCGAACTGAT
GTTGGACAAGTACAACAAGGGCGAATTCGGGACATGTCCACGTGCATTCT
GCCATAGCCAGCCGGTGCTGCCCATTGGTTTGAGTGATAATCCTGGCGAG
GATATGGTACGCATCTATTGCCCCAAGTGCAATGATGTGTACATTCCCAA
GGCGTCGAGACATTCGAATCTGGATGGAGCCTTCTTTGGCACTGGATTCC
CTCATATGTTCTTTATGGAGAAACCGGATGCTAGGCCCAAGCGGGCAAAG
CAGAAGTTTGTGCCCAGGCTTTATGGCTTTAAAATCCACCCCACGGCCTA
CCGTACTGCCGCTGAGATCCAAAAAGATGTGACAATGACGCCAGTAGGAG
AAATCGATAGCCCATCCCACATCGCAAGCTTTCTAGACCAT

BO16386.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta2-RA 660 CG8914-PA 1..656 17..672 3190 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta2-RA 912 CG8914-RA 135..790 17..672 3190 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20289679..20290230 17..568 2670 98.9 Plus
2R 25286936 2R 20290319..20290428 563..672 550 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:33:21 has no hits.

BO16386.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:24:17 Download gff for BO16386.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta2-RA 1..660 17..676 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:44:22 Download gff for BO16386.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta2-RA 48..708 9..672 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:43 Download gff for BO16386.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta2-RA 135..790 17..675 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:24:17 Download gff for BO16386.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta2-RA 48..708 9..672 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:42 Download gff for BO16386.complete
Subject Subject Range Query Range Percent Splice Strand
CkIIbeta2-RA 135..790 17..675 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:42 Download gff for BO16386.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20289679..20290229 17..567 98 -> Plus
2R 20290324..20290428 568..675 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:43 Download gff for BO16386.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16177184..16177734 17..567 98 -> Plus
arm_2R 16177829..16177933 568..675 97   Plus

BO16386.pep Sequence

Translation from 16 to 691

> BO16386.pep
MTDSDESSWIHWFCKQRGNEFFCEVDEEYIQDKFNLNFLDSNVKNYKCAL
EVILDLNPGSASEDPAEPELEASAEKLYGLIHARFILTNRGIELMLDKYN
KGEFGTCPRAFCHSQPVLPIGLSDNPGEDMVRIYCPKCNDVYIPKASRHS
NLDGAFFGTGFPHMFFMEKPDARPKRAKQKFVPRLYGFKIHPTAYRTAAE
IQKDVTMTPVGEIDSPSHIASFLDH

BO16386.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
CkIIbeta2-PA 219 CG8914-PA 1..219 1..219 1194 100 Plus
CkIIbeta-PH 215 CG15224-PH 1..198 1..196 695 64.1 Plus
CkIIbeta-PG 215 CG15224-PG 1..198 1..196 695 64.1 Plus
CkIIbeta-PD 215 CG15224-PD 1..198 1..196 695 64.1 Plus
CkIIbeta-PC 215 CG15224-PC 1..198 1..196 695 64.1 Plus