Clone Sequence Records
BO16387.3prime Sequence
719 bp (719 high quality bases) assembled on 2006-10-13
> BO16387.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGGCAATGGCTCGTCGTCGGAACTCGG
CCCAAATCTCACAGAGCAGCGGTTTCGCCAGACAATTGCACTCCTTCAGT
GGCGGGGCATCGGGCTTGAGACGTCGGCACTCGGAGAAAGATGGATATGG
CGTCCGGGGCTTCACACACGGCAGGGGTCCTCGTTCCCTTCTGCATGAGG
GTGGTCGGCGACCATCGCGATGGCAGCGACGGGCCAGACGGGGACACAGA
TCCTCCGACGGATCCGGACAAGGCTGCGGGCAGGCGGTCGATGGCTTCGC
CGATGGCTTTCGCCGCTTGATAGGAGCCGGCTTAGCCTTGGCGAAACAGC
AAATCTTCTTGGGCTTAATCTGGATGGGAGGGCAGGCCACCCATGTCTGC
CAGTACTTCCGCTTGGCCTTGTCCGACTCGACGTAGTAGATATCGTCGAA
GCGCGGATTGAACGGACAGGCGGTGTCGTCGGGATCACAGAATGGGTTCA
GCCACATGGACTGTGCCTTGACCATCTTCCTCTTCTTCTTGGGCGGAGCC
TGCAGATTGGGTTTGCCGCAGGGGAACTTGGTCAACACCTTCGGGCACCG
GCTCGGCCCCTTCTTTTCACAACCGGATGCAAATCGCACACAGCTGTTAA
CCGCACCAAAAATTGGACGGAACAGTACTCGGGAGGGATTAACACTCAGT
GCCATGTCGACTGATAACT
BO16387.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33340-PA | 690 | CG33340-RA | 1..687 | 705..19 | 3435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33340-RA | 1152 | CG33340-RA | 137..823 | 705..19 | 3435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:38:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24363274..24363960 | 705..19 | 3435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:38:47 has no hits.
BO16387.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:17 Download gff for
BO16387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-PA | 1..690 | 18..705 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:34 Download gff for
BO16387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-RA | 137..829 | 13..705 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:41:33 Download gff for
BO16387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-RA | 137..829 | 13..705 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:41:33 Download gff for
BO16387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24363274..24363966 | 13..705 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:34 Download gff for
BO16387.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20188996..20189688 | 13..705 | 99 | | Minus |
BO16387.5prime Sequence
719 bp (719 high quality bases) assembled on 2006-10-13
> BO16387.5prime
GAAGTTATCAGTCGACATGGCACTGAGTGTTAATCCCTCCCGAGTACTGT
TCCGTCCAATTTTTGGTGCGGTTAACAGCTGTGTGCGATTTGCATCCGGT
TGTGAAAAGAAGGGGCCGAGCCGGTGCCCGAAGGTGTTGACCAAGTTCCC
CTGCGGCAAACCCAATCTGCAGGCTCCGCCCAAGAAGAAGAGGAAGATGG
TCAAGGCACAGTCCATGTGGCTGAACCCATTCTGTGATCCCGACGACACC
GCCTGTCCGTTCAATCCGCGCTTCGACGATATCTACTACGTCGAGTCGGA
CAAGGCCAAGCGGAAGTACTGGCAGACATGGGTGGCCTGCCCTCCCATCC
AGATTAAGCCCAAGAAGATTTGCTGTTTCGCCAAGGCTAAGCCGGCTCCT
ATCAAGCGGCGAAAGCCATCGGCGAAGCCATCGACCGCCTGCCCGCAGCC
TTGTCCGGATCCGTCGGAGGATCTGTGTCCCCGTCTGGCCCGTCGCTGCC
ATCGCGATGGTCGCCGACCACCCTCATGCAGAAGGGAACGAGGACCCCTG
CCGTGTGTGAAGCCCCGGACGCCATATCCATCTTTCTCCGAGTGCCGACG
TCTCAAGCCCGATGCCCCGCCACTGAAGGAGTGCAATTGTCTGGCGAAAC
CGCTGCTCTGTGAGATTTGGGCCGAGTTCCGACGACGAGCCATTGCCAAG
AAGGCAAGCTTTCTAGACC
BO16387.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33340-PA | 690 | CG33340-RA | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:24:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33340-RA | 1152 | CG33340-RA | 137..823 | 17..703 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24363274..24363960 | 17..703 | 3435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:24:16 has no hits.
BO16387.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:18 Download gff for
BO16387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-PA | 1..690 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:15 Download gff for
BO16387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-RA | 137..829 | 17..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:25 Download gff for
BO16387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-RA | 137..829 | 17..709 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:25 Download gff for
BO16387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24363274..24363966 | 17..709 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:15 Download gff for
BO16387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20188996..20189688 | 17..709 | 99 | | Plus |
BO16387.complete Sequence
721 bp assembled on 2006-10-11
GenBank Submission: FJ633808
> BO16387.complete
GAAGTTATCAGTCGACATGGCACTGAGTGTTAATCCCTCCCGAGTACTGT
TCCGTCCAATTTTTGGTGCGGTTAACAGCTGTGTGCGATTTGCATCCGGT
TGTGAAAAGAAGGGGCCGAGCCGGTGCCCGAAGGTGTTGACCAAGTTCCC
CTGCGGCAAACCCAATCTGCAGGCTCCGCCCAAGAAGAAGAGGAAGATGG
TCAAGGCACAGTCCATGTGGCTGAACCCATTCTGTGATCCCGACGACACC
GCCTGTCCGTTCAATCCGCGCTTCGACGATATCTACTACGTCGAGTCGGA
CAAGGCCAAGCGGAAGTACTGGCAGACATGGGTGGCCTGCCCTCCCATCC
AGATTAAGCCCAAGAAGATTTGCTGTTTCGCCAAGGCTAAGCCGGCTCCT
ATCAAGCGGCGAAAGCCATCGGCGAAGCCATCGACCGCCTGCCCGCAGCC
TTGTCCGGATCCGTCGGAGGATCTGTGTCCCCGTCTGGCCCGTCGCTGCC
ATCGCGATGGTCGCCGACCACCCTCATGCAGAAGGGAACGAGGACCCCTG
CCGTGTGTGAAGCCCCGGACGCCATATCCATCTTTCTCCGAGTGCCGACG
TCTCAAGCCCGATGCCCCGCCACTGAAGGAGTGCAATTGTCTGGCGAAAC
CGCTGCTCTGTGAGATTTGGGCCGAGTTCCGACGACGAGCCATTGCCAAG
AAGGCAAGCTTTCTAGACCAT
BO16387.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:52:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33340-RA | 690 | CG33340-PA | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:52:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33340-RA | 1152 | CG33340-RA | 137..823 | 17..703 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:52:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24363274..24363960 | 17..703 | 3435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:52:46 has no hits.
BO16387.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:19 Download gff for
BO16387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-RA | 1..690 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:41 Download gff for
BO16387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-RA | 128..820 | 17..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:32 Download gff for
BO16387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-RA | 137..823 | 17..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:19 Download gff for
BO16387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-RA | 128..820 | 17..709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:58 Download gff for
BO16387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33340-RA | 137..823 | 17..705 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:58 Download gff for
BO16387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24363274..24363960 | 17..705 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:32 Download gff for
BO16387.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20188996..20189682 | 17..705 | 99 | | Plus |
BO16387.pep Sequence
Translation from 16 to 721
> BO16387.pep
MALSVNPSRVLFRPIFGAVNSCVRFASGCEKKGPSRCPKVLTKFPCGKPN
LQAPPKKKRKMVKAQSMWLNPFCDPDDTACPFNPRFDDIYYVESDKAKRK
YWQTWVACPPIQIKPKKICCFAKAKPAPIKRRKPSAKPSTACPQPCPDPS
EDLCPRLARRCHRDGRRPPSCRRERGPLPCVKPRTPYPSFSECRRLKPDA
PPLKECNCLAKPLLCEIWAEFRRRAIAKKASFLDH
BO16387.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33340-PA | 229 | CG33340-PA | 1..229 | 1..229 | 1296 | 100 | Plus |
| CG2127-PB | 289 | CG2127-PB | 64..284 | 23..233 | 342 | 37.3 | Plus |
| CG2127-PA | 305 | CG2127-PA | 80..300 | 23..233 | 342 | 37.3 | Plus |
| CG8701-PA | 246 | CG8701-PA | 52..231 | 46..223 | 295 | 41.2 | Plus |
| hubl-PB | 291 | CG30364-PB | 69..268 | 28..216 | 244 | 32.9 | Plus |
