Clone Sequence Records
BO16393.3prime Sequence
299 bp (299 high quality bases) assembled on 2006-10-13
> BO16393.3prime
ATGGTCTAGAAAGCTTGCCACACAGGTCACATTGCATTCAGTGCTCTGGA
TGACACCTCGCACTCGGTGCACGTGTACAGCATCAACGGCTGCAGTCTGG
GCTCCAAATACGTTTCTGGCAGGGTGACGGGATTGGCTAGTGCCTCCGAC
TACCTGGTGGTGGCCGACGATGCCGGCGATATCACCATGAGCAGACTTCT
TCTTTTCCAGCTTGAAGCCCGTTTTCGACATTCCCCTGCACGTGCCCATC
CAGACGGTGGTGGTCACTCCGGGCAACACCCACATGTCGACTGATAACT
BO16393.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32252-PA | 270 | CG32252-RA | 1..267 | 285..19 | 1335 | 100 | Minus |
CG1332-PA | 2637 | CG1332-RA | 2293..2465 | 25..197 | 865 | 100 | Plus |
CG1332-PA | 2637 | CG1332-RA | 2471..2546 | 210..285 | 380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43367-RF | 9817 | CG43367-RF | 8062..8315 | 25..285 | 1145 | 96.2 | Plus |
CG43367-RE | 10170 | CG43367-RE | 8415..8668 | 25..285 | 1145 | 96.2 | Plus |
CG43367-RD | 9842 | CG43367-RD | 8087..8340 | 25..285 | 1145 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:17:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4222184..4222362 | 19..197 | 895 | 100 | Plus |
3L | 28110227 | 3L | 4222412..4222501 | 196..285 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:17:11 has no hits.
BO16393.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:28 Download gff for
BO16393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32252-PA | 1..270 | 15..285 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:22 Download gff for
BO16393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43367-RD | 8087..8342 | 25..288 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:09 Download gff for
BO16393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43367-RD | 8087..8342 | 25..288 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:09 Download gff for
BO16393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4222179..4222360 | 14..195 | 98 | <- | Plus |
3L | 4222412..4222503 | 196..288 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:22 Download gff for
BO16393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4222179..4222360 | 14..195 | 98 | <- | Plus |
arm_3L | 4222412..4222503 | 196..288 | 98 | | Plus |
BO16393.5prime Sequence
299 bp (299 high quality bases) assembled on 2006-10-13
> BO16393.5prime
GAAGTTATCAGTCGACATGTGGGTGTTGCCCGGAGTGACCACCACCGTCT
GGATGGGCACGTGCAGGGGAATGTCGAAAACGGGCTTCAAGCTGGAAAAG
AAGAAGTCTGCTCATGGTGATATCGCCGGCATCGTCGGCCACCACCAGGT
AGTCGGAGGCACTAGCCAATCCCGTCACCCTGCCAGAAACGTATTTGGAG
CCCAGACTGCAGCCGTTGATGCTGTACACGTGCACCGAGTGCGAGGTGTC
ATCCAGAGCACTGAATGCAATGTGACCTGTGTGGCAAGCTTTCTAGACC
BO16393.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32252-PA | 270 | CG32252-RA | 1..267 | 17..283 | 1335 | 100 | Plus |
CG1332-PA | 2637 | CG1332-RA | 2293..2465 | 277..105 | 865 | 100 | Minus |
CG1332-PA | 2637 | CG1332-RA | 2471..2546 | 92..17 | 380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43367-RF | 9817 | CG43367-RF | 8062..8315 | 277..17 | 1145 | 96.2 | Minus |
CG43367-RE | 10170 | CG43367-RE | 8415..8668 | 277..17 | 1145 | 96.2 | Minus |
CG43367-RD | 9842 | CG43367-RD | 8087..8340 | 277..17 | 1145 | 96.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4222184..4222362 | 283..105 | 895 | 100 | Minus |
3L | 28110227 | 3L | 4222412..4222501 | 106..17 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:01:32 has no hits.
BO16393.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:28 Download gff for
BO16393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32252-PA | 1..270 | 17..287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:21 Download gff for
BO16393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43367-RD | 8087..8342 | 14..277 | 95 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:31 Download gff for
BO16393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43367-RD | 8087..8342 | 14..277 | 95 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:31 Download gff for
BO16393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4222412..4222503 | 14..106 | 98 | | Minus |
3L | 4222179..4222360 | 107..288 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:21 Download gff for
BO16393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4222179..4222360 | 107..288 | 98 | <- | Minus |
arm_3L | 4222412..4222503 | 14..106 | 98 | | Minus |
BO16393.complete Sequence
301 bp assembled on 2006-10-11
GenBank Submission: FJ633809
> BO16393.complete
GAAGTTATCAGTCGACATGTGGGTGTTGCCCGGAGTGACCACCACCGTCT
GGATGGGCACGTGCAGGGGAATGTCGAAAACGGGCTTCAAGCTGGAAAAG
AAGAAGTCTGCTCATGGTGATATCGCCGGCATCGTCGGCCACCACCAGGT
AGTCGGAGGCACTAGCCAATCCCGTCACCCTGCCAGAAACGTATTTGGAG
CCCAGACTGCAGCCGTTGATGCTGTACACGTGCACCGAGTGCGAGGTGTC
ATCCAGAGCACTGAATGCAATGTGACCTGTGTGGCAAGCTTTCTAGACCA
T
BO16393.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 00:48:11 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43367-RF | 9817 | CG43367-RF | 8062..8315 | 277..17 | 1120 | 96.2 | Minus |
CG43367-RE | 10170 | CG43367-RE | 8415..8668 | 277..17 | 1120 | 96.2 | Minus |
CG43367-RD | 9842 | CG43367-RD | 8087..8340 | 277..17 | 1120 | 96.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4222184..4222362 | 283..105 | 895 | 100 | Minus |
3L | 28110227 | 3L | 4222412..4222501 | 106..17 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:48:10 has no hits.
BO16393.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:21 Download gff for
BO16393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32252-RA | 1..270 | 17..287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:43 Download gff for
BO16393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32252-RA | 232..505 | 14..288 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:34:32 Download gff for
BO16393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43367-RD | 8087..8340 | 17..277 | 96 | | Minus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:22 Download gff for
BO16393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32252-RA | 232..505 | 14..288 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:04 Download gff for
BO16393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43367-RD | 8087..8340 | 17..277 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:04 Download gff for
BO16393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4222182..4222360 | 107..285 | 98 | <- | Minus |
3L | 4222412..4222501 | 17..106 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:34:32 Download gff for
BO16393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4222182..4222360 | 107..285 | 98 | <- | Minus |
arm_3L | 4222412..4222501 | 17..106 | 100 | | Minus |
BO16393.pep Sequence
Translation from 16 to 301
> BO16393.pep
MWVLPGVTTTVWMGTCRGMSKTGFKLEKKKSAHGDIAGIVGHHQVVGGTS
QSRHPARNVFGAQTAAVDAVHVHRVRGVIQSTECNVTCVASFLDH
Sequence BO16393.pep has no blast hits.