Clone BO16393 Report

Search the DGRC for BO16393

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:93
Vector:pDNR-Dual
Associated Gene/TranscriptCG32252-RA
Protein status:BO16393.pep: validated full length
Sequenced Size:301

Clone Sequence Records

BO16393.3prime Sequence

299 bp (299 high quality bases) assembled on 2006-10-13

> BO16393.3prime
ATGGTCTAGAAAGCTTGCCACACAGGTCACATTGCATTCAGTGCTCTGGA
TGACACCTCGCACTCGGTGCACGTGTACAGCATCAACGGCTGCAGTCTGG
GCTCCAAATACGTTTCTGGCAGGGTGACGGGATTGGCTAGTGCCTCCGAC
TACCTGGTGGTGGCCGACGATGCCGGCGATATCACCATGAGCAGACTTCT
TCTTTTCCAGCTTGAAGCCCGTTTTCGACATTCCCCTGCACGTGCCCATC
CAGACGGTGGTGGTCACTCCGGGCAACACCCACATGTCGACTGATAACT

BO16393.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32252-PA 270 CG32252-RA 1..267 285..19 1335 100 Minus
CG1332-PA 2637 CG1332-RA 2293..2465 25..197 865 100 Plus
CG1332-PA 2637 CG1332-RA 2471..2546 210..285 380 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG43367-RF 9817 CG43367-RF 8062..8315 25..285 1145 96.2 Plus
CG43367-RE 10170 CG43367-RE 8415..8668 25..285 1145 96.2 Plus
CG43367-RD 9842 CG43367-RD 8087..8340 25..285 1145 96.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:17:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4222184..4222362 19..197 895 100 Plus
3L 28110227 3L 4222412..4222501 196..285 450 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:17:11 has no hits.

BO16393.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:28 Download gff for BO16393.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32252-PA 1..270 15..285 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:22 Download gff for BO16393.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43367-RD 8087..8342 25..288 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:09 Download gff for BO16393.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43367-RD 8087..8342 25..288 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:09 Download gff for BO16393.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4222179..4222360 14..195 98 <- Plus
3L 4222412..4222503 196..288 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:22 Download gff for BO16393.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4222179..4222360 14..195 98 <- Plus
arm_3L 4222412..4222503 196..288 98   Plus

BO16393.5prime Sequence

299 bp (299 high quality bases) assembled on 2006-10-13

> BO16393.5prime
GAAGTTATCAGTCGACATGTGGGTGTTGCCCGGAGTGACCACCACCGTCT
GGATGGGCACGTGCAGGGGAATGTCGAAAACGGGCTTCAAGCTGGAAAAG
AAGAAGTCTGCTCATGGTGATATCGCCGGCATCGTCGGCCACCACCAGGT
AGTCGGAGGCACTAGCCAATCCCGTCACCCTGCCAGAAACGTATTTGGAG
CCCAGACTGCAGCCGTTGATGCTGTACACGTGCACCGAGTGCGAGGTGTC
ATCCAGAGCACTGAATGCAATGTGACCTGTGTGGCAAGCTTTCTAGACC

BO16393.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32252-PA 270 CG32252-RA 1..267 17..283 1335 100 Plus
CG1332-PA 2637 CG1332-RA 2293..2465 277..105 865 100 Minus
CG1332-PA 2637 CG1332-RA 2471..2546 92..17 380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG43367-RF 9817 CG43367-RF 8062..8315 277..17 1145 96.2 Minus
CG43367-RE 10170 CG43367-RE 8415..8668 277..17 1145 96.2 Minus
CG43367-RD 9842 CG43367-RD 8087..8340 277..17 1145 96.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4222184..4222362 283..105 895 100 Minus
3L 28110227 3L 4222412..4222501 106..17 450 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:01:32 has no hits.

BO16393.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:28 Download gff for BO16393.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32252-PA 1..270 17..287 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:21 Download gff for BO16393.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43367-RD 8087..8342 14..277 95   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:31 Download gff for BO16393.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43367-RD 8087..8342 14..277 95   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:31 Download gff for BO16393.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4222412..4222503 14..106 98   Minus
3L 4222179..4222360 107..288 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:21 Download gff for BO16393.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4222179..4222360 107..288 98 <- Minus
arm_3L 4222412..4222503 14..106 98   Minus

BO16393.complete Sequence

301 bp assembled on 2006-10-11

GenBank Submission: FJ633809

> BO16393.complete
GAAGTTATCAGTCGACATGTGGGTGTTGCCCGGAGTGACCACCACCGTCT
GGATGGGCACGTGCAGGGGAATGTCGAAAACGGGCTTCAAGCTGGAAAAG
AAGAAGTCTGCTCATGGTGATATCGCCGGCATCGTCGGCCACCACCAGGT
AGTCGGAGGCACTAGCCAATCCCGTCACCCTGCCAGAAACGTATTTGGAG
CCCAGACTGCAGCCGTTGATGCTGTACACGTGCACCGAGTGCGAGGTGTC
ATCCAGAGCACTGAATGCAATGTGACCTGTGTGGCAAGCTTTCTAGACCA
T

BO16393.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 00:48:11 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG43367-RF 9817 CG43367-RF 8062..8315 277..17 1120 96.2 Minus
CG43367-RE 10170 CG43367-RE 8415..8668 277..17 1120 96.2 Minus
CG43367-RD 9842 CG43367-RD 8087..8340 277..17 1120 96.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4222184..4222362 283..105 895 100 Minus
3L 28110227 3L 4222412..4222501 106..17 450 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:48:10 has no hits.

BO16393.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:21 Download gff for BO16393.complete
Subject Subject Range Query Range Percent Splice Strand
CG32252-RA 1..270 17..287 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:43 Download gff for BO16393.complete
Subject Subject Range Query Range Percent Splice Strand
CG32252-RA 232..505 14..288 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:34:32 Download gff for BO16393.complete
Subject Subject Range Query Range Percent Splice Strand
CG43367-RD 8087..8340 17..277 96   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:22 Download gff for BO16393.complete
Subject Subject Range Query Range Percent Splice Strand
CG32252-RA 232..505 14..288 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:04 Download gff for BO16393.complete
Subject Subject Range Query Range Percent Splice Strand
CG43367-RD 8087..8340 17..277 96   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:04 Download gff for BO16393.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4222182..4222360 107..285 98 <- Minus
3L 4222412..4222501 17..106 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:34:32 Download gff for BO16393.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4222182..4222360 107..285 98 <- Minus
arm_3L 4222412..4222501 17..106 100   Minus

BO16393.pep Sequence

Translation from 16 to 301

> BO16393.pep
MWVLPGVTTTVWMGTCRGMSKTGFKLEKKKSAHGDIAGIVGHHQVVGGTS
QSRHPARNVFGAQTAAVDAVHVHRVRGVIQSTECNVTCVASFLDH
Sequence BO16393.pep has no blast hits.