Clone Sequence Records
BO16395.3prime Sequence
772 bp (737 high quality bases) assembled on 2006-10-13
> BO16395.3prime
ATGGTCTAGAAAGCTTGCCAGATTTAATCCATCGCGTCTCATTCTTTCCG
CAAGAGCTATACATTTCGGGGTGGTCTCCAAGCAAAGGCACTCTCTTTTT
CGGAGCGGTCTTGTTCCTCTTATTTTTTCTGAGTAACAAGGATATGGAGC
TCGCAACTTGGTGCATAGGGTAGGCTTTCTGCCTCTGGAGCAACGAGGAT
TGCAGCGAGCCAGCTTGCAACAGGGGTGAAAGAATTTCGGACACTTCCTC
GTTGGGTCCCGCTCCCATTCTCCATCCGCACAGAGTAGCCTTCGAGCCTT
ATAGTTGATTTGGCAAGTTCCTGGGCAGGGCGGCCTGATCCGGTACAGAA
TCTCAGGAGGTTCGATGGCGTCCAGGCAGCAAACCTTCTTCAGCCGTTTC
TTAACGGGTGAACACTCCACCCAGGTGCGTTGGTAGCAGCGGCACTTGTT
TGAGGGATGGTAGTACATCGCATCGAAGCGGGGCAGCATTTCCTTGCAGA
ACGGCTGCTCGTTCGCCTTGCAAGGTGGCTCCCACATCGAACGGAATGGC
TTCTCCTCCAGCTTTGCGGCTTTGGGTCGTCTTATCTCTACGCAGGGATT
TTTGGCCGCCGATCGCAGGACACAGCATTTCCTCTCCTTCTTCTGATCGC
GTTCTTGCTTCAATAACCTCTCATGTGGCAGTTTGAGATTGATCGTTTCC
CTGGCCTGCACGCATCTGCCGCTTGGAACATGATGGCACAAAGGGTCGAC
AGGTTGGCATGGCGGATCCGCG
BO16395.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30366-PA | 855 | CG30366-RA | 99..852 | 772..19 | 3770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swif-RB | 2074 | CG30366-RB | 1099..1852 | 772..19 | 3770 | 100 | Minus |
swif-RA | 1015 | CG30366-RA | 142..895 | 772..19 | 3770 | 100 | Minus |
cola-RA | 2074 | CG30363-RA | 1099..1852 | 772..19 | 3770 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8363494..8364247 | 19..772 | 3770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:13:31 has no hits.
BO16395.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:31 Download gff for
BO16395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30366-PA | 99..855 | 16..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:45 Download gff for
BO16395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swif-RA | 142..895 | 19..772 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:34 Download gff for
BO16395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cola-RA | 1099..1852 | 19..772 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:34 Download gff for
BO16395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8363494..8364247 | 19..772 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:45 Download gff for
BO16395.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4250999..4251752 | 19..772 | 100 | | Plus |
BO16395.5prime Sequence
884 bp (783 high quality bases) assembled on 2006-10-13
> BO16395.5prime
GAAGTTATCAGTCGACATGCAGTCAGCACTGTGGATCTTTTGCAGACAAG
GTTTCAGGAGCTTTGCCACTAAAGCGCAAGGTTTCAGAAGCTTCGCCAGC
AAAGTGACCTACCACGCGGATCCGCCATGCCAACCTGTCGACCCTTTGTG
CCATCATGTTCCAAGCGGCAGATGCGTGCAGGCCAGGGAAACGATCAATC
TCAAACTGCCACATGAGAGGTTATTGAAGCAAGAACGCGATCAGAAGAAG
GAGAGGAAATGCTGTGTCCTGCGATCGGCGGCCAAAAATCCCTGCGTAGA
GATAAGACGACCCAAAGCCGCAAAGCTGGAGGAGAAGCCATTCCGTTCGA
TGTGGGAGCCACCTTGCAAGGCGAACGAGCAGCCGTTCTGCAAGGAAATG
CTGCCCCGCTTCGATGCGATGTACTACCATCCCTCAAACAAGTGCCGCTG
CTACCAACGCACCTGGGTGGAGTGTTCACCCGTTAAGAAACGGCTGAAGA
AGGTTTGCTGCCTGGACGCCATCGAACCTCCTGAGATTCTGTACCGGATC
AGGCCGCCCTGCCCAGGAACTTGCCAAATCAACTATAAGGCTCGAAGGCT
ACTCTGTGCGGATGGAGAATGGGAGCGGGACCCAACGAGGAAGTGTCCGA
AATTCTTTCACCCCTGTTGCAAGCTGGCTCGCTGCAATCCTCGTTGCTCC
AGAGGCAGAAAGCCTACCCTATGCACCAAGTTGCGAGCTCCATATCCTTG
TTACTCAGAAAAAATAAGAGGAACAAGACCGCTCCGAAAAAGAGAGTGCC
TTTGCTTGGAGACCACCCCGAAATGTATAGCTCTTGCGGAAAGAATGAGA
CGCGATGGATTAAATCTGGGCAGCTTTCTAGACC
BO16395.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30366-PA | 855 | CG30366-RA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:24:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swif-RB | 2074 | CG30366-RB | 1000..1852 | 16..868 | 4265 | 100 | Plus |
swif-RA | 1015 | CG30366-RA | 43..895 | 16..868 | 4265 | 100 | Plus |
cola-RA | 2074 | CG30363-RA | 1000..1852 | 16..868 | 4265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:24:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8363494..8364346 | 868..16 | 4265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:24:38 has no hits.
BO16395.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:31 Download gff for
BO16395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30366-PA | 1..855 | 17..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:19 Download gff for
BO16395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swif-RA | 43..895 | 16..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:17 Download gff for
BO16395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cola-RA | 1000..1852 | 16..868 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:17 Download gff for
BO16395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8363494..8364346 | 16..868 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:19 Download gff for
BO16395.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4250999..4251851 | 16..868 | 100 | | Minus |
BO16395.complete Sequence
886 bp assembled on 2006-10-11
GenBank Submission: FJ633810
> BO16395.complete
GAAGTTATCAGTCGACATGCAGTCAGCACTGTGGATCTTTTGCAGACAAG
GTTTCAGGAGCTTTGCCACTAAAGCGCAAGGTTTCAGAAGCTTCGCCAGC
AAAGTGACCTACCACGCGGATCCGCCATGCCAACCTGTCGACCCTTTGTG
CCATCATGTTCCAAGCGGCAGATGCGTGCAGGCCAGGGAAACGATCAATC
TCAAACTGCCACATGAGAGGTTATTGAAGCAAGAACGCGATCAGAAGAAG
GAGAGGAAATGCTGTGTCCTGCGATCGGCGGCCAAAAATCCCTGCGTAGA
GATAAGACGACCCAAAGCCGCAAAGCTGGAGGAGAAGCCATTCCGTTCGA
TGTGGGAGCCACCTTGCAAGGCGAACGAGCAGCCGTTCTGCAAGGAAATG
CTGCCCCGCTTCGATGCGATGTACTACCATCCCTCAAACAAGTGCCGCTG
CTACCAACGCACCTGGGTGGAGTGTTCACCCGTTAAGAAACGGCTGAAGA
AGGTTTGCTGCCTGGACGCCATCGAACCTCCTGAGATTCTGTACCGGATC
AGGCCGCCCTGCCCAGGAACTTGCCAAATCAACTATAAGGCTCGAAGGCT
ACTCTGTGCGGATGGAGAATGGGAGCGGGACCCAACGAGGAAGTGTCCGA
AATTCTTTCACCCCTGTTGCAAGCTGGCTCGCTGCAATCCTCGTTGCTCC
AGAGGCAGAAAGCCTACCCTATGCACCAAGTTGCGAGCTCCATATCCTTG
TTACTCAGAAAAAATAAGAGGAACAAGACCGCTCCGAAAAAGAGAGTGCC
TTTGCTTGGAGACCACCCCGAAATGTATAGCTCTTGCGGAAAGAATGAGA
CGCGATGGATTAAATCTGGCAAGCTTTCTAGACCAT
BO16395.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swif-RB | 855 | CG30366-PB | 1..852 | 17..868 | 4260 | 100 | Plus |
swif-RA | 855 | CG30366-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swif-RB | 2074 | CG30366-RB | 1000..1852 | 16..868 | 4265 | 100 | Plus |
swif-RA | 1015 | CG30366-RA | 43..895 | 16..868 | 4265 | 100 | Plus |
cola-RA | 2074 | CG30363-RA | 1000..1852 | 16..868 | 4265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8363494..8364346 | 868..16 | 4265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:05:13 has no hits.
BO16395.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:27 Download gff for
BO16395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30366-RB | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:47 Download gff for
BO16395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30366-RB | 1000..1852 | 16..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:51:14 Download gff for
BO16395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
swif-RA | 44..895 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:29 Download gff for
BO16395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30366-RB | 1000..1852 | 16..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:36 Download gff for
BO16395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cola-RA | 1001..1852 | 17..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:36 Download gff for
BO16395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8363491..8364345 | 17..870 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:51:14 Download gff for
BO16395.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4250996..4251850 | 17..870 | 99 | | Minus |
BO16395.pep Sequence
Translation from 16 to 886
> BO16395.pep
MQSALWIFCRQGFRSFATKAQGFRSFASKVTYHADPPCQPVDPLCHHVPS
GRCVQARETINLKLPHERLLKQERDQKKERKCCVLRSAAKNPCVEIRRPK
AAKLEEKPFRSMWEPPCKANEQPFCKEMLPRFDAMYYHPSNKCRCYQRTW
VECSPVKKRLKKVCCLDAIEPPEILYRIRPPCPGTCQINYKARRLLCADG
EWERDPTRKCPKFFHPCCKLARCNPRCSRGRKPTLCTKLRAPYPCYSEKI
RGTRPLRKRECLCLETTPKCIALAERMRRDGLNLASFLDH
BO16395.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
swif-PB | 284 | CG30366-PB | 1..284 | 1..284 | 1606 | 100 | Plus |
swif-PA | 284 | CG30366-PA | 1..284 | 1..284 | 1606 | 100 | Plus |
hubl-PB | 291 | CG30364-PB | 54..272 | 37..279 | 293 | 31 | Plus |
hubl-PA | 291 | CG30364-PA | 54..272 | 37..279 | 293 | 31 | Plus |
CG11635-PA | 286 | CG11635-PA | 41..235 | 88..279 | 219 | 33.6 | Plus |