Clone BO16395 Report

Search the DGRC for BO16395

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:163
Well:95
Vector:pDNR-Dual
Associated Gene/Transcriptswif-RA
Protein status:BO16395.pep: validated full length
Sequenced Size:886

Clone Sequence Records

BO16395.3prime Sequence

772 bp (737 high quality bases) assembled on 2006-10-13

> BO16395.3prime
ATGGTCTAGAAAGCTTGCCAGATTTAATCCATCGCGTCTCATTCTTTCCG
CAAGAGCTATACATTTCGGGGTGGTCTCCAAGCAAAGGCACTCTCTTTTT
CGGAGCGGTCTTGTTCCTCTTATTTTTTCTGAGTAACAAGGATATGGAGC
TCGCAACTTGGTGCATAGGGTAGGCTTTCTGCCTCTGGAGCAACGAGGAT
TGCAGCGAGCCAGCTTGCAACAGGGGTGAAAGAATTTCGGACACTTCCTC
GTTGGGTCCCGCTCCCATTCTCCATCCGCACAGAGTAGCCTTCGAGCCTT
ATAGTTGATTTGGCAAGTTCCTGGGCAGGGCGGCCTGATCCGGTACAGAA
TCTCAGGAGGTTCGATGGCGTCCAGGCAGCAAACCTTCTTCAGCCGTTTC
TTAACGGGTGAACACTCCACCCAGGTGCGTTGGTAGCAGCGGCACTTGTT
TGAGGGATGGTAGTACATCGCATCGAAGCGGGGCAGCATTTCCTTGCAGA
ACGGCTGCTCGTTCGCCTTGCAAGGTGGCTCCCACATCGAACGGAATGGC
TTCTCCTCCAGCTTTGCGGCTTTGGGTCGTCTTATCTCTACGCAGGGATT
TTTGGCCGCCGATCGCAGGACACAGCATTTCCTCTCCTTCTTCTGATCGC
GTTCTTGCTTCAATAACCTCTCATGTGGCAGTTTGAGATTGATCGTTTCC
CTGGCCTGCACGCATCTGCCGCTTGGAACATGATGGCACAAAGGGTCGAC
AGGTTGGCATGGCGGATCCGCG

BO16395.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG30366-PA 855 CG30366-RA 99..852 772..19 3770 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:34
Subject Length Description Subject Range Query Range Score Percent Strand
swif-RB 2074 CG30366-RB 1099..1852 772..19 3770 100 Minus
swif-RA 1015 CG30366-RA 142..895 772..19 3770 100 Minus
cola-RA 2074 CG30363-RA 1099..1852 772..19 3770 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8363494..8364247 19..772 3770 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:13:31 has no hits.

BO16395.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:31 Download gff for BO16395.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30366-PA 99..855 16..772 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:45 Download gff for BO16395.3prime
Subject Subject Range Query Range Percent Splice Strand
swif-RA 142..895 19..772 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:34 Download gff for BO16395.3prime
Subject Subject Range Query Range Percent Splice Strand
cola-RA 1099..1852 19..772 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:34 Download gff for BO16395.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8363494..8364247 19..772 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:45 Download gff for BO16395.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4250999..4251752 19..772 100   Plus

BO16395.5prime Sequence

884 bp (783 high quality bases) assembled on 2006-10-13

> BO16395.5prime
GAAGTTATCAGTCGACATGCAGTCAGCACTGTGGATCTTTTGCAGACAAG
GTTTCAGGAGCTTTGCCACTAAAGCGCAAGGTTTCAGAAGCTTCGCCAGC
AAAGTGACCTACCACGCGGATCCGCCATGCCAACCTGTCGACCCTTTGTG
CCATCATGTTCCAAGCGGCAGATGCGTGCAGGCCAGGGAAACGATCAATC
TCAAACTGCCACATGAGAGGTTATTGAAGCAAGAACGCGATCAGAAGAAG
GAGAGGAAATGCTGTGTCCTGCGATCGGCGGCCAAAAATCCCTGCGTAGA
GATAAGACGACCCAAAGCCGCAAAGCTGGAGGAGAAGCCATTCCGTTCGA
TGTGGGAGCCACCTTGCAAGGCGAACGAGCAGCCGTTCTGCAAGGAAATG
CTGCCCCGCTTCGATGCGATGTACTACCATCCCTCAAACAAGTGCCGCTG
CTACCAACGCACCTGGGTGGAGTGTTCACCCGTTAAGAAACGGCTGAAGA
AGGTTTGCTGCCTGGACGCCATCGAACCTCCTGAGATTCTGTACCGGATC
AGGCCGCCCTGCCCAGGAACTTGCCAAATCAACTATAAGGCTCGAAGGCT
ACTCTGTGCGGATGGAGAATGGGAGCGGGACCCAACGAGGAAGTGTCCGA
AATTCTTTCACCCCTGTTGCAAGCTGGCTCGCTGCAATCCTCGTTGCTCC
AGAGGCAGAAAGCCTACCCTATGCACCAAGTTGCGAGCTCCATATCCTTG
TTACTCAGAAAAAATAAGAGGAACAAGACCGCTCCGAAAAAGAGAGTGCC
TTTGCTTGGAGACCACCCCGAAATGTATAGCTCTTGCGGAAAGAATGAGA
CGCGATGGATTAAATCTGGGCAGCTTTCTAGACC

BO16395.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG30366-PA 855 CG30366-RA 1..852 17..868 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:24:41
Subject Length Description Subject Range Query Range Score Percent Strand
swif-RB 2074 CG30366-RB 1000..1852 16..868 4265 100 Plus
swif-RA 1015 CG30366-RA 43..895 16..868 4265 100 Plus
cola-RA 2074 CG30363-RA 1000..1852 16..868 4265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:24:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8363494..8364346 868..16 4265 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:24:38 has no hits.

BO16395.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:31 Download gff for BO16395.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30366-PA 1..855 17..872 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:19 Download gff for BO16395.5prime
Subject Subject Range Query Range Percent Splice Strand
swif-RA 43..895 16..868 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:17 Download gff for BO16395.5prime
Subject Subject Range Query Range Percent Splice Strand
cola-RA 1000..1852 16..868 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:17 Download gff for BO16395.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8363494..8364346 16..868 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:19 Download gff for BO16395.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4250999..4251851 16..868 100   Minus

BO16395.complete Sequence

886 bp assembled on 2006-10-11

GenBank Submission: FJ633810

> BO16395.complete
GAAGTTATCAGTCGACATGCAGTCAGCACTGTGGATCTTTTGCAGACAAG
GTTTCAGGAGCTTTGCCACTAAAGCGCAAGGTTTCAGAAGCTTCGCCAGC
AAAGTGACCTACCACGCGGATCCGCCATGCCAACCTGTCGACCCTTTGTG
CCATCATGTTCCAAGCGGCAGATGCGTGCAGGCCAGGGAAACGATCAATC
TCAAACTGCCACATGAGAGGTTATTGAAGCAAGAACGCGATCAGAAGAAG
GAGAGGAAATGCTGTGTCCTGCGATCGGCGGCCAAAAATCCCTGCGTAGA
GATAAGACGACCCAAAGCCGCAAAGCTGGAGGAGAAGCCATTCCGTTCGA
TGTGGGAGCCACCTTGCAAGGCGAACGAGCAGCCGTTCTGCAAGGAAATG
CTGCCCCGCTTCGATGCGATGTACTACCATCCCTCAAACAAGTGCCGCTG
CTACCAACGCACCTGGGTGGAGTGTTCACCCGTTAAGAAACGGCTGAAGA
AGGTTTGCTGCCTGGACGCCATCGAACCTCCTGAGATTCTGTACCGGATC
AGGCCGCCCTGCCCAGGAACTTGCCAAATCAACTATAAGGCTCGAAGGCT
ACTCTGTGCGGATGGAGAATGGGAGCGGGACCCAACGAGGAAGTGTCCGA
AATTCTTTCACCCCTGTTGCAAGCTGGCTCGCTGCAATCCTCGTTGCTCC
AGAGGCAGAAAGCCTACCCTATGCACCAAGTTGCGAGCTCCATATCCTTG
TTACTCAGAAAAAATAAGAGGAACAAGACCGCTCCGAAAAAGAGAGTGCC
TTTGCTTGGAGACCACCCCGAAATGTATAGCTCTTGCGGAAAGAATGAGA
CGCGATGGATTAAATCTGGCAAGCTTTCTAGACCAT

BO16395.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
swif-RB 855 CG30366-PB 1..852 17..868 4260 100 Plus
swif-RA 855 CG30366-PA 1..852 17..868 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
swif-RB 2074 CG30366-RB 1000..1852 16..868 4265 100 Plus
swif-RA 1015 CG30366-RA 43..895 16..868 4265 100 Plus
cola-RA 2074 CG30363-RA 1000..1852 16..868 4265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:05:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8363494..8364346 868..16 4265 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:05:13 has no hits.

BO16395.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:27 Download gff for BO16395.complete
Subject Subject Range Query Range Percent Splice Strand
CG30366-RB 1..855 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:47 Download gff for BO16395.complete
Subject Subject Range Query Range Percent Splice Strand
CG30366-RB 1000..1852 16..868 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:51:14 Download gff for BO16395.complete
Subject Subject Range Query Range Percent Splice Strand
swif-RA 44..895 17..870 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:29 Download gff for BO16395.complete
Subject Subject Range Query Range Percent Splice Strand
CG30366-RB 1000..1852 16..868 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:36 Download gff for BO16395.complete
Subject Subject Range Query Range Percent Splice Strand
cola-RA 1001..1852 17..870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:36 Download gff for BO16395.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8363491..8364345 17..870 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:51:14 Download gff for BO16395.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4250996..4251850 17..870 99   Minus

BO16395.pep Sequence

Translation from 16 to 886

> BO16395.pep
MQSALWIFCRQGFRSFATKAQGFRSFASKVTYHADPPCQPVDPLCHHVPS
GRCVQARETINLKLPHERLLKQERDQKKERKCCVLRSAAKNPCVEIRRPK
AAKLEEKPFRSMWEPPCKANEQPFCKEMLPRFDAMYYHPSNKCRCYQRTW
VECSPVKKRLKKVCCLDAIEPPEILYRIRPPCPGTCQINYKARRLLCADG
EWERDPTRKCPKFFHPCCKLARCNPRCSRGRKPTLCTKLRAPYPCYSEKI
RGTRPLRKRECLCLETTPKCIALAERMRRDGLNLASFLDH

BO16395.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:43
Subject Length Description Subject Range Query Range Score Percent Strand
swif-PB 284 CG30366-PB 1..284 1..284 1606 100 Plus
swif-PA 284 CG30366-PA 1..284 1..284 1606 100 Plus
hubl-PB 291 CG30364-PB 54..272 37..279 293 31 Plus
hubl-PA 291 CG30364-PA 54..272 37..279 293 31 Plus
CG11635-PA 286 CG11635-PA 41..235 88..279 219 33.6 Plus