Clone Sequence Records
BO16396.5prime Sequence
272 bp (272 high quality bases) assembled on 2006-10-13
> BO16396.5prime
GAAGTTATCAGTCGACATGTTTGCCTATGACATGGATAACAATGTATGCG
TAGAATTTATCTACGGTGGTTGTGGCGGAAACCCGAATCGTTTTCAAACT
AAAAAGGAATGCATACTTCTATGTAATGCTTTAGCTGATGAAGACGAATA
CCTTATTGTTTATACTGACAAAAATGAACAACAAATAACAGATGGCACGA
TGTCAGAAGAAGGTTCGGTAATGACCACGAAAAGAGAAAACACTACACTC
TCATATGCAAGCTTTCTAGACC
BO16396.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:00:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17380-PA | 243 | CG17380-RA | 1..240 | 17..256 | 1200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17380-RB | 1068 | CG17380-RB | 163..402 | 17..256 | 1200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:20:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23403274..23403513 | 256..17 | 1200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:20:39 has no hits.
BO16396.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:33 Download gff for
BO16396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17380-PA | 1..243 | 17..260 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:57:36 Download gff for
BO16396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17380-RB | 115..361 | 14..261 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:48:02 Download gff for
BO16396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17380-RB | 160..406 | 14..261 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:48:02 Download gff for
BO16396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23403270..23403516 | 14..261 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:57:36 Download gff for
BO16396.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19228992..19229238 | 14..261 | 98 | | Minus |
BO16396.complete Sequence
274 bp assembled on 2007-03-23
GenBank Submission: FJ633811
> BO16396.complete
GAAGTTATCAGTCGACATGTTTGCCTATGACATGGATAACAATGTATGCG
TAGAATTTATCTACGGTGGTTGTGGCGGAAACCCGAATCGTTTTCAAACT
AAAAAGGAATGCATACTTCTATGTAATGCTTTAGCTGATGAAGACGAATA
CCTTATTGTTTATACTGACAAAAATGAACAACAAATAACAGATGGCACGA
TGTCAGAAGAAGGTTCGGTAATGACCACGAAAAGAGAAAACACTACACTC
TCATATGCAAGCTTTCTAGACCAT
BO16396.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17380-RB | 360 | CG17380-PB | 118..357 | 17..256 | 1200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:01:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17380-RB | 1068 | CG17380-RB | 163..402 | 17..256 | 1200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:01:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23403274..23403513 | 256..17 | 1200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:01:54 has no hits.
BO16396.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:42 Download gff for
BO16396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17380-RB | 115..360 | 14..260 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:44 Download gff for
BO16396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17380-RB | 115..361 | 14..261 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:03:25 Download gff for
BO16396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17380-RB | 124..357 | 23..258 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:43 Download gff for
BO16396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17380-RB | 115..361 | 14..261 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:06 Download gff for
BO16396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17380-RB | 169..402 | 23..258 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:06 Download gff for
BO16396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23403272..23403507 | 23..258 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:03:25 Download gff for
BO16396.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19228994..19229229 | 23..258 | 99 | | Minus |
BO16396.pep Sequence
Translation from 16 to 274
> BO16396.pep
MFAYDMDNNVCVEFIYGGCGGNPNRFQTKKECILLCNALADEDEYLIVYT
DKNEQQITDGTMSEEGSVMTTKRENTTLSYASFLDH
BO16396.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17380-PB | 119 | CG17380-PB | 40..119 | 1..80 | 431 | 100 | Plus |
