Clone Sequence Records
BO16402.3prime Sequence
763 bp (704 high quality bases) assembled on 2006-10-13
> BO16402.3prime
ATGGTCTAGAAAGCTTGCTTCCTTGGAGACGGGTTTGCAGGCTATCATGT
ACACTGGAAAGAGTCCCTTGGGAAAGTTTTGTTGCTTGACCTTGCGTACA
ATGCGAAATCCGGCTTCCTTTAGGAAGTGTTCATAGCTGTCCAGAGGCCT
CGTTACCGACGAGTCGTTCCTATCTTCCACTGTCTTCTTCGAGCTGCTCA
CGTTCTCCTTCAGACACAAGAAGGCGCCGGGCGCCAGTCCCTGCTTTATG
CGTCGAAAGAACGAGACCAGATCGCGGTCCGTGAGATGGCCCAGGACCCA
CTGGGTCCAAACGAGGTCGTACTGTTGCGTAGGCGTAAACTTCTGCAATC
CCACGTTATAGATCTGTCCCACCTTTCCACGGCTTCCGTCTTCCGAAGTG
CAGTACTCCCGTGCTTTATCGGCAAACGCGGGATCCTGCTCGACAAGATC
CACGCAGCTGAAGCGGGGGATCAGGAGATTCCGAGTCACCCGACCAATGC
CAGCTCCGCAGTCGAGGGCCAACCTGTTGCCCGGCACGCGGATCTCGCGC
AGGAACACATTCGATCCCTGTATATCTATGGCACTAATGTAGCCCAGGCC
GCCGAGCATCCCGTTAACAGTCGCCGGTACCTCAGACCAATATTTTTGTG
CCTTATTGTAAAATTCGGACTCCGGTGCGGCGACTTTGGTCGAACTATCG
CTCGAAGAAGGGGACGCTGTCTTGGCATCTGAACTTGCGGCTATACTGCT
ATCATCCTTCTGC
BO16402.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1675-PA | 831 | CG1675-RA | 84..828 | 763..19 | 3725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ntmt-RA | 1053 | CG1675-RA | 156..900 | 763..19 | 3725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9865787..9866531 | 763..19 | 3725 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:04:34 has no hits.
BO16402.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:33 Download gff for
BO16402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1675-PA | 84..831 | 18..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:27 Download gff for
BO16402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntmt-RA | 156..907 | 10..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:11 Download gff for
BO16402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntmt-RA | 156..907 | 10..763 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:11 Download gff for
BO16402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9865787..9866538 | 10..763 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:27 Download gff for
BO16402.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5753292..5754043 | 10..763 | 99 | | Minus |
BO16402.5prime Sequence
789 bp (785 high quality bases) assembled on 2006-10-13
> BO16402.5prime
GAAGTTATCAGTCGACATGACGACTACATTAGAAGAGCAGCTTTCAGACA
AGTTGCAGATGATGGACGAGACCACGGATAAGGTCCAGGGGTCGTCGAAG
CAGAAGGATGATAGCAGTATAGCCGCAAGTTCAGATGCCAAGACAGCGTC
CCCTTCTTCGAGCGATAGTTCGACCAAAGTCGCCGCACCGGAGTCCGAAT
TTTACAATAAGGCACAAAAATATTGGTCTGAGGTACCGGCGACTGTTAAC
GGGATGCTCGGCGGCCTGGGCTACATTAGTGCCATAGATATACAGGGATC
GAATGTGTTCCTGCGCGAGATCCGCGTGCCGGGCAACAGGTTGGCCCTCG
ACTGCGGAGCTGGCATTGGTCGGGTGACTCGGAATCTCCTGATCCCCCGC
TTCAGCTGCGTGGATCTTGTCGAGCAGGATCCCGCGTTTGCCGATAAAGC
ACGGGAGTACTGCACTTCGGAAGACGGAAGCCGTGGAAAGGTGGGACAGA
TCTATAACGTGGGATTGCAGAAGTTTACGCCTACGCAACAGTACGACCTC
GTTTGGACCCAGTGGGTCCTGGGCCATCTCACGGACCGCGATCTGGTCTC
GTTCTTTCGACGCATAAAGCAGGGACTGGCGCCCGGCGCCTTCTTGTGTC
TGANGGAGAACGTGAGCAGCTCGAAGAAGACAGTGGAAGATAGGAACGAC
TCGTCGGTAACGAGGCCTCTGGACAGCTATGAACACTTCCTAAAGGAAGC
CGGATTTCGCATTGTACGCAAGGTCAAGCAACAAAACTT
BO16402.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1675-PA | 831 | CG1675-RA | 1..773 | 17..789 | 3846 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ntmt-RA | 1053 | CG1675-RA | 73..845 | 17..789 | 3854 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9865704..9866476 | 17..789 | 3854 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:48:13 has no hits.
BO16402.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:35 Download gff for
BO16402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1675-PA | 1..773 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:57 Download gff for
BO16402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntmt-RA | 73..845 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:17 Download gff for
BO16402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntmt-RA | 73..845 | 17..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:17 Download gff for
BO16402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9865704..9866476 | 17..789 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:57 Download gff for
BO16402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5753209..5753981 | 17..789 | 99 | | Plus |
BO16402.complete Sequence
862 bp assembled on 2006-10-11
GenBank Submission: FJ633812
> BO16402.complete
GAAGTTATCAGTCGACATGACGACTACATTAGAAGAGCAGCTTTCAGACA
AGTTGCAGATGATGGACGAGACCACGGATAAGGTCCAGGGGTCGTCGAAG
CAGAAGGATGATAGCAGTATAGCCGCAAGTTCAGATGCCAAGACAGCGTC
CCCTTCTTCGAGCGATAGTTCGACCAAAGTCGCCGCACCGGAGTCCGAAT
TTTACAATAAGGCACAAAAATATTGGTCTGAGGTACCGGCGACTGTTAAC
GGGATGCTCGGCGGCCTGGGCTACATTAGTGCCATAGATATACAGGGATC
GAATGTGTTCCTGCGCGAGATCCGCGTGCCGGGCAACAGGTTGGCCCTCG
ACTGCGGAGCTGGCATTGGTCGGGTGACTCGGAATCTCCTGATCCCCCGC
TTCAGCTGCGTGGATCTTGTCGAGCAGGATCCCGCGTTTGCCGATAAAGC
ACGGGAGTACTGCACTTCGGAAGACGGAAGCCGTGGAAAGGTGGGACAGA
TCTATAACGTGGGATTGCAGAAGTTTACGCCTACGCAACAGTACGACCTC
GTTTGGACCCAGTGGGTCCTGGGCCATCTCACGGACCGCGATCTGGTCTC
GTTCTTTCGACGCATAAAGCAGGGACTGGCGCCCGGCGCCTTCTTGTGTC
TGAAGGAGAACGTGAGCAGCTCGAAGAAGACAGTGGAAGATAGGAACGAC
TCGTCGGTAACGAGGCCTCTGGACAGCTATGAACACTTCCTAAAGGAAGC
CGGATTTCGCATTGTACGCAAGGTCAAGCAACAAAACTTTCCCAAGGGAC
TCTTTCCAGTGTACATGATAGCCTGCAAACCCGTCTCCAAGGAAGCAAGC
TTTCTAGACCAT
BO16402.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ntmt-RA | 831 | CG1675-PA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ntmt-RA | 1053 | CG1675-RA | 73..900 | 17..844 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9865704..9866531 | 17..844 | 4140 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:16:14 has no hits.
BO16402.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:31 Download gff for
BO16402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1675-RA | 1..831 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:48 Download gff for
BO16402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1675-RA | 56..886 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:30 Download gff for
BO16402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntmt-RA | 73..900 | 17..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:31 Download gff for
BO16402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1675-RA | 56..886 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:25 Download gff for
BO16402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntmt-RA | 73..900 | 17..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:25 Download gff for
BO16402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9865704..9866531 | 17..846 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:30 Download gff for
BO16402.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5753209..5754036 | 17..846 | 99 | | Plus |
BO16402.pep Sequence
Translation from 16 to 862
> BO16402.pep
MTTTLEEQLSDKLQMMDETTDKVQGSSKQKDDSSIAASSDAKTASPSSSD
SSTKVAAPESEFYNKAQKYWSEVPATVNGMLGGLGYISAIDIQGSNVFLR
EIRVPGNRLALDCGAGIGRVTRNLLIPRFSCVDLVEQDPAFADKAREYCT
SEDGSRGKVGQIYNVGLQKFTPTQQYDLVWTQWVLGHLTDRDLVSFFRRI
KQGLAPGAFLCLKENVSSSKKTVEDRNDSSVTRPLDSYEHFLKEAGFRIV
RKVKQQNFPKGLFPVYMIACKPVSKEASFLDH
BO16402.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ntmt-PA | 276 | CG1675-PA | 1..276 | 1..276 | 1423 | 100 | Plus |
