Clone Sequence Records
BO16403.3prime Sequence
314 bp (314 high quality bases) assembled on 2006-10-13
> BO16403.3prime
ATGGTCTAGAAAGCTTGCAAGCGATCCCACTTTCTCCATCAAATACCAGG
GCAGGAACACGGAGACGGCCACCACGGCAACACAAGTTGCGCACATGGCC
ACTGTCGCCGAGAGATTGGTCATCGAGAAGTGATCCTCTTTGTCATCCAG
CTCCTCATGAGGATGCCTCTCGAACTCCAGGACCTCGACGTCGAAGCGAA
AACGGACTTTCGACTCCGGAGAGTCCTTGCGCCACACCAAATGGCCAGAG
GACTCGCGGCGCTCCAGGCTCCATTTCGGATCGTGCACTGATCCAGTCAT
GTCGACTGATAACT
BO16403.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18622-PA | 285 | CG18622-RA | 1..282 | 300..19 | 1410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:52:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18622-RB | 752 | CG18622-RB | 154..435 | 300..19 | 1410 | 100 | Minus |
CG18622-RC | 949 | CG18622-RC | 351..632 | 300..19 | 1410 | 100 | Minus |
CG18622-RA | 837 | CG18622-RA | 239..520 | 300..19 | 1410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:52:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16983827..16984097 | 19..289 | 1355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:52:21 has no hits.
BO16403.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:35 Download gff for
BO16403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-PA | 1..285 | 15..300 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:28 Download gff for
BO16403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-RA | 237..523 | 15..303 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:35 Download gff for
BO16403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-RA | 237..523 | 15..303 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:35 Download gff for
BO16403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16983823..16984100 | 15..296 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:28 Download gff for
BO16403.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12809545..12809822 | 15..296 | 97 | | Plus |
BO16403.5prime Sequence
314 bp (314 high quality bases) assembled on 2006-10-13
> BO16403.5prime
GAAGTTATCAGTCGACATGACTGGATCAGTGCACGATCCGAAATGGAGCC
TGGAGCGCCGCGAGTCCTCTGGCCATTTGGTGTGGCGCAAGGACTCTCCG
GAGTCGAAAGTCCGTTTTCGCTTCGACGTCGAGGTCCTGGAGTTCGAGAG
GCATCCTCATGAGGAGCTGGATGACAAAGAGGATCACTTCTCGATGACCA
ATCTCTCGGCGACAGTGGCCATGTGCGCAACTTGTGTTGCCGTGGTGGCC
GTCTCCGTGTTCCTGCCCTGGTATTTGATGGAGAAAGTGGGATCGCTTGC
AAGCTTTCTAGACC
BO16403.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18622-PA | 285 | CG18622-RA | 1..282 | 17..298 | 1410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18622-RB | 752 | CG18622-RB | 154..435 | 17..298 | 1410 | 100 | Plus |
CG18622-RC | 949 | CG18622-RC | 351..632 | 17..298 | 1410 | 100 | Plus |
CG18622-RA | 837 | CG18622-RA | 239..520 | 17..298 | 1410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16983827..16984097 | 298..28 | 1355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:06:16 has no hits.
BO16403.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:36 Download gff for
BO16403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-PA | 1..285 | 17..302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:49 Download gff for
BO16403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-RA | 237..523 | 14..302 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:25 Download gff for
BO16403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-RA | 237..523 | 14..302 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:25 Download gff for
BO16403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16983823..16984100 | 21..302 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:49 Download gff for
BO16403.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12809545..12809822 | 21..302 | 97 | | Minus |
BO16403.complete Sequence
316 bp assembled on 2006-10-11
GenBank Submission: FJ633813
> BO16403.complete
GAAGTTATCAGTCGACATGACTGGATCAGTGCACGATCCGAAATGGAGCC
TGGAGCGCCGCGAGTCCTCTGGCCATTTGGTGTGGCGCAAGGACTCTCCG
GAGTCGAAAGTCCGTTTTCGCTTCGACGTCGAGGTCCTGGAGTTCGAGAG
GCATCCTCATGAGGAGCTGGATGACAAAGAGGATCACTTCTCGATGACCA
ATCTCTCGGCGACAGTGGCCATGTGCGCAACTTGTGTTGCCGTGGTGGCC
GTCTCCGTGTTCCTGCCCTGGTATTTGATGGAGAAAGTGGGATCGCTTGC
AAGCTTTCTAGACCAT
BO16403.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:01:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18622-RB | 285 | CG18622-PB | 1..282 | 17..298 | 1410 | 100 | Plus |
CG18622-RC | 285 | CG18622-PC | 1..282 | 17..298 | 1410 | 100 | Plus |
CG18622-RA | 285 | CG18622-PA | 1..282 | 17..298 | 1410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18622-RB | 752 | CG18622-RB | 154..435 | 17..298 | 1410 | 100 | Plus |
CG18622-RC | 949 | CG18622-RC | 351..632 | 17..298 | 1410 | 100 | Plus |
CG18622-RA | 837 | CG18622-RA | 239..520 | 17..298 | 1410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:01:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16983827..16984097 | 298..28 | 1355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:01:58 has no hits.
BO16403.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:52 Download gff for
BO16403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-RA | 1..285 | 17..302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:23 Download gff for
BO16403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-RA | 443..729 | 14..302 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:56 Download gff for
BO16403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-RA | 239..520 | 17..300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:52 Download gff for
BO16403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-RA | 443..729 | 14..302 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:38 Download gff for
BO16403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18622-RA | 239..520 | 17..300 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:38 Download gff for
BO16403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16983825..16984100 | 21..300 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:56 Download gff for
BO16403.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12809547..12809822 | 21..300 | 97 | | Minus |
BO16403.pep Sequence
Translation from 16 to 316
> BO16403.pep
MTGSVHDPKWSLERRESSGHLVWRKDSPESKVRFRFDVEVLEFERHPHEE
LDDKEDHFSMTNLSATVAMCATCVAVVAVSVFLPWYLMEKVGSLASFLDH
BO16403.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18622-PB | 94 | CG18622-PB | 1..94 | 1..94 | 501 | 100 | Plus |
CG18622-PC | 94 | CG18622-PC | 1..94 | 1..94 | 501 | 100 | Plus |
CG18622-PA | 94 | CG18622-PA | 1..94 | 1..94 | 501 | 100 | Plus |