Clone BO16403 Report

Search the DGRC for BO16403

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:3
Vector:pDNR-Dual
Associated Gene/TranscriptCG18622-RA
Protein status:BO16403.pep: validated full length
Sequenced Size:316

Clone Sequence Records

BO16403.3prime Sequence

314 bp (314 high quality bases) assembled on 2006-10-13

> BO16403.3prime
ATGGTCTAGAAAGCTTGCAAGCGATCCCACTTTCTCCATCAAATACCAGG
GCAGGAACACGGAGACGGCCACCACGGCAACACAAGTTGCGCACATGGCC
ACTGTCGCCGAGAGATTGGTCATCGAGAAGTGATCCTCTTTGTCATCCAG
CTCCTCATGAGGATGCCTCTCGAACTCCAGGACCTCGACGTCGAAGCGAA
AACGGACTTTCGACTCCGGAGAGTCCTTGCGCCACACCAAATGGCCAGAG
GACTCGCGGCGCTCCAGGCTCCATTTCGGATCGTGCACTGATCCAGTCAT
GTCGACTGATAACT

BO16403.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG18622-PA 285 CG18622-RA 1..282 300..19 1410 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG18622-RB 752 CG18622-RB 154..435 300..19 1410 100 Minus
CG18622-RC 949 CG18622-RC 351..632 300..19 1410 100 Minus
CG18622-RA 837 CG18622-RA 239..520 300..19 1410 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16983827..16984097 19..289 1355 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:52:21 has no hits.

BO16403.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:35 Download gff for BO16403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18622-PA 1..285 15..300 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:28 Download gff for BO16403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 237..523 15..303 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:35 Download gff for BO16403.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 237..523 15..303 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:35 Download gff for BO16403.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16983823..16984100 15..296 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:28 Download gff for BO16403.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12809545..12809822 15..296 97   Plus

BO16403.5prime Sequence

314 bp (314 high quality bases) assembled on 2006-10-13

> BO16403.5prime
GAAGTTATCAGTCGACATGACTGGATCAGTGCACGATCCGAAATGGAGCC
TGGAGCGCCGCGAGTCCTCTGGCCATTTGGTGTGGCGCAAGGACTCTCCG
GAGTCGAAAGTCCGTTTTCGCTTCGACGTCGAGGTCCTGGAGTTCGAGAG
GCATCCTCATGAGGAGCTGGATGACAAAGAGGATCACTTCTCGATGACCA
ATCTCTCGGCGACAGTGGCCATGTGCGCAACTTGTGTTGCCGTGGTGGCC
GTCTCCGTGTTCCTGCCCTGGTATTTGATGGAGAAAGTGGGATCGCTTGC
AAGCTTTCTAGACC

BO16403.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG18622-PA 285 CG18622-RA 1..282 17..298 1410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG18622-RB 752 CG18622-RB 154..435 17..298 1410 100 Plus
CG18622-RC 949 CG18622-RC 351..632 17..298 1410 100 Plus
CG18622-RA 837 CG18622-RA 239..520 17..298 1410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16983827..16984097 298..28 1355 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:06:16 has no hits.

BO16403.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:36 Download gff for BO16403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18622-PA 1..285 17..302 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:49 Download gff for BO16403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 237..523 14..302 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:50:25 Download gff for BO16403.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 237..523 14..302 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:50:25 Download gff for BO16403.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16983823..16984100 21..302 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:49 Download gff for BO16403.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12809545..12809822 21..302 97   Minus

BO16403.complete Sequence

316 bp assembled on 2006-10-11

GenBank Submission: FJ633813

> BO16403.complete
GAAGTTATCAGTCGACATGACTGGATCAGTGCACGATCCGAAATGGAGCC
TGGAGCGCCGCGAGTCCTCTGGCCATTTGGTGTGGCGCAAGGACTCTCCG
GAGTCGAAAGTCCGTTTTCGCTTCGACGTCGAGGTCCTGGAGTTCGAGAG
GCATCCTCATGAGGAGCTGGATGACAAAGAGGATCACTTCTCGATGACCA
ATCTCTCGGCGACAGTGGCCATGTGCGCAACTTGTGTTGCCGTGGTGGCC
GTCTCCGTGTTCCTGCCCTGGTATTTGATGGAGAAAGTGGGATCGCTTGC
AAGCTTTCTAGACCAT

BO16403.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:01:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG18622-RB 285 CG18622-PB 1..282 17..298 1410 100 Plus
CG18622-RC 285 CG18622-PC 1..282 17..298 1410 100 Plus
CG18622-RA 285 CG18622-PA 1..282 17..298 1410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG18622-RB 752 CG18622-RB 154..435 17..298 1410 100 Plus
CG18622-RC 949 CG18622-RC 351..632 17..298 1410 100 Plus
CG18622-RA 837 CG18622-RA 239..520 17..298 1410 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16983827..16984097 298..28 1355 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:01:58 has no hits.

BO16403.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:52 Download gff for BO16403.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 1..285 17..302 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:23 Download gff for BO16403.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 443..729 14..302 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:56 Download gff for BO16403.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 239..520 17..300 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:52 Download gff for BO16403.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 443..729 14..302 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:38 Download gff for BO16403.complete
Subject Subject Range Query Range Percent Splice Strand
CG18622-RA 239..520 17..300 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:38 Download gff for BO16403.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16983825..16984100 21..300 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:56 Download gff for BO16403.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12809547..12809822 21..300 97   Minus

BO16403.pep Sequence

Translation from 16 to 316

> BO16403.pep
MTGSVHDPKWSLERRESSGHLVWRKDSPESKVRFRFDVEVLEFERHPHEE
LDDKEDHFSMTNLSATVAMCATCVAVVAVSVFLPWYLMEKVGSLASFLDH

BO16403.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG18622-PB 94 CG18622-PB 1..94 1..94 501 100 Plus
CG18622-PC 94 CG18622-PC 1..94 1..94 501 100 Plus
CG18622-PA 94 CG18622-PA 1..94 1..94 501 100 Plus