Clone BO16404 Report

Search the DGRC for BO16404

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG32109-RA
Protein status:BO16404.pep: validated full length
Sequenced Size:727

Clone Sequence Records

BO16404.5prime Sequence

698 bp (573 high quality bases) assembled on 2006-10-13

> BO16404.5prime
GAAGTTATCAGTCGACATGGATCCAGTAGTACTTGTTTTATCTTATGGAG
CAGTTCCTGCACTGGAAATAGTCGAAAATATTTTATCTGAAGTGAATCAA
TCGAAGGAATCAACATCAACGGAGTGCTCACTTAATTGTTATAAGTGCAT
CATTAAAACCAAGTACTATAACACTTCTATCAACTTAATTCCATTTTCTG
GAAAACTGGAAGCTGTGCCGGAGAAAATTCTTCAAGCAACCGAGGCGTTG
ATTATTTACTTTGATTCACAAGACACCTCCTTTATCGACACTATTCCCAA
GACGTTAGCGAAGAATGAACAGATTCAGCTGGGCTTTCTGCTAACCTCTT
CCACTTCAGAAGAAGGTGGATTGTCCTTTGGAGAAATTAAGGAGAAAACG
AATTTCCTTTTTGACATCATAACATTGAGAAGCAATGTTGAGAGTGACCC
AGATGAAGCTGAAAAGGACTACGAGGAAGTTGTGGAGGGTTTGAAAAACG
TAGTTTGGTCCAATGTCAAGTTTGGTTCTGATCACAANGAGGAAATCAGT
GCCGACGAGCTGGATAGTCAGCTGAGGGACTTTGAAACTTACTCCTCACG
GCGCAAAATCTACGTAACGATACGAGTCTCACTCGGGAACATTTCTGGAT
CGGGCTGAGCAGTTTGCAGGCTTAGTTTCCTCGATTTTAAATGACAAT

BO16404.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG32109-PA 696 CG32109-RA 1..571 17..587 2811 99.6 Plus
CG32109-PA 696 CG32109-RA 570..626 585..641 285 100 Plus
CG32109-PA 696 CG32109-RA 627..684 641..698 265 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG32109-RA 1052 CG32109-RA 65..748 17..698 3329 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12745981..12746236 275..530 1280 100 Plus
3L 28110227 3L 12745729..12745925 78..274 985 100 Plus
3L 28110227 3L 12746296..12746466 530..698 714 97.1 Plus
3L 28110227 3L 12745408..12745468 17..77 305 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:18:17 has no hits.

BO16404.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:38 Download gff for BO16404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32109-PA 1..684 17..698 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:26 Download gff for BO16404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32109-RA 58..748 9..698 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:16 Download gff for BO16404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32109-RA 58..748 9..698 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:16 Download gff for BO16404.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12745981..12746236 275..530 100 -> Plus
3L 12746297..12746466 531..698 97   Plus
3L 12745401..12745468 9..77 94 -> Plus
3L 12745729..12745925 78..274 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:26 Download gff for BO16404.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12738501..12738568 9..77 94 -> Plus
arm_3L 12738829..12739025 78..274 100 -> Plus
arm_3L 12739081..12739336 275..530 100 -> Plus
arm_3L 12739397..12739566 531..698 97   Plus

BO16404.3prime Sequence

606 bp (493 high quality bases) assembled on 2006-10-13

> BO16404.3prime
ATGGTCTAGAAAGCTTGCGTCGCTATCATTGTCATTTAAAATCGAGGAAA
CTATGCCTGCAAACTGCTCAGCCCGATCCAGAAATTGTTCCCGAGTGAGA
CTCGTATCGTTACGTAGATTTTGCGCCGTGAGGAGTAAGTTTTCAAAGTC
CTTCAGCTGACTATCCAGCTCGTCGGCACTGATTTCCTCCTTGTGATCAG
AACCAAACTTGACATTGGACCAAACTACGTTTTTCAAACCCTCCACAACT
TCCTCGTAGTCCTTTTCAGCTTCATCTGGGTCACTCTCAACATTGCTTCT
CAATGTTATGATGTCAAAAAGGAAATTCGTTTTCTCCTTAATTTCTCCAA
AGGACAATCCACCTTCTTCTGAAGTGGAAGAGGTTAGCAGAAAGCCCAGC
TGAATCTGTTCATTCTTCGCTAACGTCTTGGGAATAGTGTCGATAAAGGA
GGTGTCTTGTGAATCAAAGTAAATAATCAACGCCTCGGTTGCTTGAAGAA
TTTTCTCCGGCACAGCTTCCAGTTTTCCAGAAAATGGAATTAAGTTGATA
GAAGTGTTATAGTACTTGGTTTTAATGATGCACTTATAACAATTTAAGTG
AGCACT

BO16404.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG32109-PA 696 CG32109-RA 118..693 594..19 2880 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:30:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG32109-RA 1052 CG32109-RA 171..757 606..19 2915 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:30:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12745981..12746236 453..198 1280 100 Minus
3L 28110227 3L 12746296..12746475 198..19 900 100 Minus
3L 28110227 3L 12745774..12745925 606..454 715 99.3 Minus
Blast to na_te.dros performed on 2015-02-10 16:30:48 has no hits.

BO16404.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:37 Download gff for BO16404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32109-PA 107..696 15..606 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:20 Download gff for BO16404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32109-RA 171..762 12..606 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:30 Download gff for BO16404.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32109-RA 171..762 12..606 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:30 Download gff for BO16404.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12745981..12746236 198..453 100 -> Minus
3L 12746297..12746481 14..197 97 -> Minus
3L 12745774..12745925 454..606 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:20 Download gff for BO16404.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12738874..12739025 454..606 99 -> Minus
arm_3L 12739081..12739336 198..453 100 -> Minus
arm_3L 12739397..12739581 14..197 97 -> Minus

BO16404.complete Sequence

727 bp assembled on 2006-10-11

GenBank Submission: FJ633814

> BO16404.complete
GAAGTTATCAGTCGACATGGATCCAGTAGTACTTGTTTTATCTTATGGAG
CAGTTCCTGCACTGGAAATAGTCGAAAATATTTTATCTGAAGTGAATCAA
TCGAAGGAATCAACATCAACGGAGTGCTCACTTAATTGTTATAAGTGCAT
CATTAAAACCAAGTACTATAACACTTCTATCAACTTAATTCCATTTTCTG
GAAAACTGGAAGCTGTGCCGGAGAAAATTCTTCAAGCAACCGAGGCGTTG
ATTATTTACTTTGATTCACAAGACACCTCCTTTATCGACACTATTCCCAA
GACGTTAGCGAAGAATGAACAGATTCAGCTGGGCTTTCTGCTAACCTCTT
CCACTTCAGAAGAAGGTGGATTGTCCTTTGGAGAAATTAAGGAGAAAACG
AATTTCCTTTTTGACATCATAACATTGAGAAGCAATGTTGAGAGTGACCC
AGATGAAGCTGAAAAGGACTACGAGGAAGTTGTGGAGGGTTTGAAAAACG
TAGTTTGGTCCAATGTCAAGTTTGGTTCTGATCACAAGGAGGAAATCAGT
GCCGACGAGCTGGATAGTCAGCTGAAGGACTTTGAAAACTTACTCCTCAC
GGCGCAAAATCTACGTAACGATACGAGTCTCACTCGGGAACAATTTCTGG
ATCGGGCTGAGCAGTTTGCAGGCATAGTTTCCTCGATTTTAAATGACAAT
GATAGCGACGCAAGCTTTCTAGACCAT

BO16404.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG32109-RA 696 CG32109-PA 1..693 17..709 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG32109-RA 1052 CG32109-RA 65..757 17..709 3465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12745981..12746236 275..530 1280 100 Plus
3L 28110227 3L 12745729..12745925 78..274 985 100 Plus
3L 28110227 3L 12746296..12746475 530..709 900 100 Plus
3L 28110227 3L 12745408..12745468 17..77 305 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:26:14 has no hits.

BO16404.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:54 Download gff for BO16404.complete
Subject Subject Range Query Range Percent Splice Strand
CG32109-RA 1..696 17..713 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:13 Download gff for BO16404.complete
Subject Subject Range Query Range Percent Splice Strand
CG32109-RA 59..751 17..711 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:30 Download gff for BO16404.complete
Subject Subject Range Query Range Percent Splice Strand
CG32109-RA 65..757 17..711 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:55 Download gff for BO16404.complete
Subject Subject Range Query Range Percent Splice Strand
CG32109-RA 52..754 9..713 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:32 Download gff for BO16404.complete
Subject Subject Range Query Range Percent Splice Strand
CG32109-RA 65..757 17..711 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:32 Download gff for BO16404.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12745408..12745468 17..77 100 -> Plus
3L 12745729..12745925 78..274 100 -> Plus
3L 12745981..12746236 275..530 100 -> Plus
3L 12746297..12746475 531..711 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:30 Download gff for BO16404.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12738508..12738568 17..77 100 -> Plus
arm_3L 12738829..12739025 78..274 100 -> Plus
arm_3L 12739081..12739336 275..530 100 -> Plus
arm_3L 12739397..12739575 531..711 98   Plus

BO16404.pep Sequence

Translation from 16 to 727

> BO16404.pep
MDPVVLVLSYGAVPALEIVENILSEVNQSKESTSTECSLNCYKCIIKTKY
YNTSINLIPFSGKLEAVPEKILQATEALIIYFDSQDTSFIDTIPKTLAKN
EQIQLGFLLTSSTSEEGGLSFGEIKEKTNFLFDIITLRSNVESDPDEAEK
DYEEVVEGLKNVVWSNVKFGSDHKEEISADELDSQLKDFENLLLTAQNLR
NDTSLTREQFLDRAEQFAGIVSSILNDNDSDASFLDH

BO16404.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG32109-PA 231 CG32109-PA 1..231 1..231 1159 100 Plus