Clone Sequence Records
BO16404.5prime Sequence
698 bp (573 high quality bases) assembled on 2006-10-13
> BO16404.5prime
GAAGTTATCAGTCGACATGGATCCAGTAGTACTTGTTTTATCTTATGGAG
CAGTTCCTGCACTGGAAATAGTCGAAAATATTTTATCTGAAGTGAATCAA
TCGAAGGAATCAACATCAACGGAGTGCTCACTTAATTGTTATAAGTGCAT
CATTAAAACCAAGTACTATAACACTTCTATCAACTTAATTCCATTTTCTG
GAAAACTGGAAGCTGTGCCGGAGAAAATTCTTCAAGCAACCGAGGCGTTG
ATTATTTACTTTGATTCACAAGACACCTCCTTTATCGACACTATTCCCAA
GACGTTAGCGAAGAATGAACAGATTCAGCTGGGCTTTCTGCTAACCTCTT
CCACTTCAGAAGAAGGTGGATTGTCCTTTGGAGAAATTAAGGAGAAAACG
AATTTCCTTTTTGACATCATAACATTGAGAAGCAATGTTGAGAGTGACCC
AGATGAAGCTGAAAAGGACTACGAGGAAGTTGTGGAGGGTTTGAAAAACG
TAGTTTGGTCCAATGTCAAGTTTGGTTCTGATCACAANGAGGAAATCAGT
GCCGACGAGCTGGATAGTCAGCTGAGGGACTTTGAAACTTACTCCTCACG
GCGCAAAATCTACGTAACGATACGAGTCTCACTCGGGAACATTTCTGGAT
CGGGCTGAGCAGTTTGCAGGCTTAGTTTCCTCGATTTTAAATGACAAT
BO16404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32109-PA | 696 | CG32109-RA | 1..571 | 17..587 | 2811 | 99.6 | Plus |
CG32109-PA | 696 | CG32109-RA | 570..626 | 585..641 | 285 | 100 | Plus |
CG32109-PA | 696 | CG32109-RA | 627..684 | 641..698 | 265 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32109-RA | 1052 | CG32109-RA | 65..748 | 17..698 | 3329 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12745981..12746236 | 275..530 | 1280 | 100 | Plus |
3L | 28110227 | 3L | 12745729..12745925 | 78..274 | 985 | 100 | Plus |
3L | 28110227 | 3L | 12746296..12746466 | 530..698 | 714 | 97.1 | Plus |
3L | 28110227 | 3L | 12745408..12745468 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:18:17 has no hits.
BO16404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:38 Download gff for
BO16404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-PA | 1..684 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:26 Download gff for
BO16404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-RA | 58..748 | 9..698 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:16 Download gff for
BO16404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-RA | 58..748 | 9..698 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:16 Download gff for
BO16404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12745981..12746236 | 275..530 | 100 | -> | Plus |
3L | 12746297..12746466 | 531..698 | 97 | | Plus |
3L | 12745401..12745468 | 9..77 | 94 | -> | Plus |
3L | 12745729..12745925 | 78..274 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:26 Download gff for
BO16404.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12738501..12738568 | 9..77 | 94 | -> | Plus |
arm_3L | 12738829..12739025 | 78..274 | 100 | -> | Plus |
arm_3L | 12739081..12739336 | 275..530 | 100 | -> | Plus |
arm_3L | 12739397..12739566 | 531..698 | 97 | | Plus |
BO16404.3prime Sequence
606 bp (493 high quality bases) assembled on 2006-10-13
> BO16404.3prime
ATGGTCTAGAAAGCTTGCGTCGCTATCATTGTCATTTAAAATCGAGGAAA
CTATGCCTGCAAACTGCTCAGCCCGATCCAGAAATTGTTCCCGAGTGAGA
CTCGTATCGTTACGTAGATTTTGCGCCGTGAGGAGTAAGTTTTCAAAGTC
CTTCAGCTGACTATCCAGCTCGTCGGCACTGATTTCCTCCTTGTGATCAG
AACCAAACTTGACATTGGACCAAACTACGTTTTTCAAACCCTCCACAACT
TCCTCGTAGTCCTTTTCAGCTTCATCTGGGTCACTCTCAACATTGCTTCT
CAATGTTATGATGTCAAAAAGGAAATTCGTTTTCTCCTTAATTTCTCCAA
AGGACAATCCACCTTCTTCTGAAGTGGAAGAGGTTAGCAGAAAGCCCAGC
TGAATCTGTTCATTCTTCGCTAACGTCTTGGGAATAGTGTCGATAAAGGA
GGTGTCTTGTGAATCAAAGTAAATAATCAACGCCTCGGTTGCTTGAAGAA
TTTTCTCCGGCACAGCTTCCAGTTTTCCAGAAAATGGAATTAAGTTGATA
GAAGTGTTATAGTACTTGGTTTTAATGATGCACTTATAACAATTTAAGTG
AGCACT
BO16404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32109-PA | 696 | CG32109-RA | 118..693 | 594..19 | 2880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:30:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32109-RA | 1052 | CG32109-RA | 171..757 | 606..19 | 2915 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:30:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12745981..12746236 | 453..198 | 1280 | 100 | Minus |
3L | 28110227 | 3L | 12746296..12746475 | 198..19 | 900 | 100 | Minus |
3L | 28110227 | 3L | 12745774..12745925 | 606..454 | 715 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:30:48 has no hits.
BO16404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:37 Download gff for
BO16404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-PA | 107..696 | 15..606 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:20 Download gff for
BO16404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-RA | 171..762 | 12..606 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:30 Download gff for
BO16404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-RA | 171..762 | 12..606 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:30 Download gff for
BO16404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12745981..12746236 | 198..453 | 100 | -> | Minus |
3L | 12746297..12746481 | 14..197 | 97 | -> | Minus |
3L | 12745774..12745925 | 454..606 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:20 Download gff for
BO16404.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12738874..12739025 | 454..606 | 99 | -> | Minus |
arm_3L | 12739081..12739336 | 198..453 | 100 | -> | Minus |
arm_3L | 12739397..12739581 | 14..197 | 97 | -> | Minus |
BO16404.complete Sequence
727 bp assembled on 2006-10-11
GenBank Submission: FJ633814
> BO16404.complete
GAAGTTATCAGTCGACATGGATCCAGTAGTACTTGTTTTATCTTATGGAG
CAGTTCCTGCACTGGAAATAGTCGAAAATATTTTATCTGAAGTGAATCAA
TCGAAGGAATCAACATCAACGGAGTGCTCACTTAATTGTTATAAGTGCAT
CATTAAAACCAAGTACTATAACACTTCTATCAACTTAATTCCATTTTCTG
GAAAACTGGAAGCTGTGCCGGAGAAAATTCTTCAAGCAACCGAGGCGTTG
ATTATTTACTTTGATTCACAAGACACCTCCTTTATCGACACTATTCCCAA
GACGTTAGCGAAGAATGAACAGATTCAGCTGGGCTTTCTGCTAACCTCTT
CCACTTCAGAAGAAGGTGGATTGTCCTTTGGAGAAATTAAGGAGAAAACG
AATTTCCTTTTTGACATCATAACATTGAGAAGCAATGTTGAGAGTGACCC
AGATGAAGCTGAAAAGGACTACGAGGAAGTTGTGGAGGGTTTGAAAAACG
TAGTTTGGTCCAATGTCAAGTTTGGTTCTGATCACAAGGAGGAAATCAGT
GCCGACGAGCTGGATAGTCAGCTGAAGGACTTTGAAAACTTACTCCTCAC
GGCGCAAAATCTACGTAACGATACGAGTCTCACTCGGGAACAATTTCTGG
ATCGGGCTGAGCAGTTTGCAGGCATAGTTTCCTCGATTTTAAATGACAAT
GATAGCGACGCAAGCTTTCTAGACCAT
BO16404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:26:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32109-RA | 696 | CG32109-PA | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32109-RA | 1052 | CG32109-RA | 65..757 | 17..709 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12745981..12746236 | 275..530 | 1280 | 100 | Plus |
3L | 28110227 | 3L | 12745729..12745925 | 78..274 | 985 | 100 | Plus |
3L | 28110227 | 3L | 12746296..12746475 | 530..709 | 900 | 100 | Plus |
3L | 28110227 | 3L | 12745408..12745468 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:26:14 has no hits.
BO16404.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:54 Download gff for
BO16404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-RA | 1..696 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:13 Download gff for
BO16404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-RA | 59..751 | 17..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:30 Download gff for
BO16404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-RA | 65..757 | 17..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:55 Download gff for
BO16404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-RA | 52..754 | 9..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:32 Download gff for
BO16404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32109-RA | 65..757 | 17..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:32 Download gff for
BO16404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12745408..12745468 | 17..77 | 100 | -> | Plus |
3L | 12745729..12745925 | 78..274 | 100 | -> | Plus |
3L | 12745981..12746236 | 275..530 | 100 | -> | Plus |
3L | 12746297..12746475 | 531..711 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:30 Download gff for
BO16404.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12738508..12738568 | 17..77 | 100 | -> | Plus |
arm_3L | 12738829..12739025 | 78..274 | 100 | -> | Plus |
arm_3L | 12739081..12739336 | 275..530 | 100 | -> | Plus |
arm_3L | 12739397..12739575 | 531..711 | 98 | | Plus |
BO16404.pep Sequence
Translation from 16 to 727
> BO16404.pep
MDPVVLVLSYGAVPALEIVENILSEVNQSKESTSTECSLNCYKCIIKTKY
YNTSINLIPFSGKLEAVPEKILQATEALIIYFDSQDTSFIDTIPKTLAKN
EQIQLGFLLTSSTSEEGGLSFGEIKEKTNFLFDIITLRSNVESDPDEAEK
DYEEVVEGLKNVVWSNVKFGSDHKEEISADELDSQLKDFENLLLTAQNLR
NDTSLTREQFLDRAEQFAGIVSSILNDNDSDASFLDH
BO16404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32109-PA | 231 | CG32109-PA | 1..231 | 1..231 | 1159 | 100 | Plus |