Clone BO16405 Report

Search the DGRC for BO16405

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG11790-RB
Protein status:BO16405.pep: full length peptide match
Sequenced Size:769

Clone Sequence Records

BO16405.3prime Sequence

614 bp (533 high quality bases) assembled on 2006-10-13

> BO16405.3prime
ATGGTCTAGAAAGCTTGCTTTCGACTTATTTTTTGTTTTCGCAGGCTCTG
AACTGAATATTTTGGCAACCTTTTTGCCAACGAATAAGAGAGCAACTAAG
GCGAAAATACTCAAAGTCGCCAGCGATGTTATGTTTTCAGCTGCAAAATA
ACTTTGCAGTGGGCCCAAAAATTCGTTTACGGCACTTGGGATTGCGGGCA
CTGGTTGAGGATGGCTCTGGGTATATCCCTTCTCAGCAAACTGGACAAAG
GCTTCGGGACTGTATTGCTTGGCTGAATATTTGTACATCTTTCCTTGCCT
CAAGAAAATAAAAGCCGGTGCTTCCAATACTCCCAGTCGCGTAGCAGTTG
AGATTCCAGACTCCAAACTGTTCATGCGGGCAATATTCAGCTTTCGCTTT
AGCTTTCCGCCCACAGACTCCCAAACGGCATAGAGTCGCTGACAGACGGT
ACATTCGGCCGAAGAGAAGAAGATAAACCAGTCCCCGGTAGTGGCACCCG
ACGAGGCTTGAGTCAGGTGCTCGAAGTTGTCGTCGGAAAGCTCTTTGACC
GCCGGCTCTAAGTTGTCATTGAAGAAGTCTAGGATTTCGTCATCGTTGAT
CTCGCCATGGTATA

BO16405.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-PA 909 CG11790-RA 311..906 614..19 2955 99.8 Minus
CG11790-PB 738 CG11790-RB 140..735 614..19 2955 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-RB 1116 CG11790-RB 497..1092 614..19 2965 99.8 Minus
CG11790-RA 1010 CG11790-RA 391..986 614..19 2965 99.8 Minus
CG11790-RC 1040 CG11790-RC 391..826 614..179 2165 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25048442..25048603 466..305 810 100 Minus
3R 32079331 3R 25049272..25049431 178..19 800 100 Minus
3R 32079331 3R 25048202..25048349 614..467 725 99.3 Minus
3R 32079331 3R 25048665..25048790 304..179 630 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:46:31 has no hits.

BO16405.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:38 Download gff for BO16405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-PB 141..738 15..613 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:37 Download gff for BO16405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 392..993 12..613 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:15 Download gff for BO16405.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 392..993 12..613 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:15 Download gff for BO16405.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25048203..25048349 467..613 99 -> Minus
3R 25048442..25048603 305..466 100 -> Minus
3R 25048665..25048790 179..304 100 -> Minus
3R 25049272..25049430 20..178 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:37 Download gff for BO16405.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20873925..20874071 467..613 99 -> Minus
arm_3R 20874164..20874325 305..466 100 -> Minus
arm_3R 20874387..20874512 179..304 100 -> Minus
arm_3R 20874994..20875152 20..178 100 -> Minus

BO16405.5prime Sequence

573 bp (537 high quality bases) assembled on 2006-10-13

> BO16405.5prime
GAAGTTATCAGTCGACATGGTGACCAAGATACGTGCCCAGCTGGAGGAGA
CCTTGTCGGCCATTGTGGTCCAGTCGGTGGACAGCAACCTGGTATCCATC
TATGACCCCAGCAAGGAGCCCGCTTTGGTGTTCTTCAGGCGAGGAATACC
CATTCTATACCATGGCGAGATCAACGATGACGAAATCCTAGACTTCTTCA
ATGACAACTTAGAGCCGGCGGTCAAAGAGCTTTCCGACGACAACTTCGAG
CACCTGACTCAAGCCTCGTCGGGTGCCACTACCGGGGACTGGTTTATCTT
CTTCTCTTCGGCCGAATGTACCGTCTGTCAGCGACTCTATGCCGTTTGGG
AGTCTGTGGGCGGAAAGCTAAAGCGAAAGCTGAATATTGCCCGCATGAAC
AGTTTGGAGTCTGGAATCTCAACTGCTACGCGACTGGGAGTATTGGAAGC
ACCGGCTTTTATTTTCTTGAGGCAAGGAAAGATGTACAAATATTCAGCCA
AGCAATACAGTCCCGAAGCCTTTGTCCAGTTTGCTGAGAAGGGATATACC
CAGAGCCATCCTCAACCAGTGCC

BO16405.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-PA 909 CG11790-RA 170..728 15..573 2770 99.8 Plus
CG11790-PB 738 CG11790-RB 1..557 17..573 2760 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-RC 1040 CG11790-RC 250..808 15..573 2780 99.8 Plus
CG11790-RB 1116 CG11790-RB 356..914 15..573 2780 99.8 Plus
CG11790-RA 1010 CG11790-RA 250..808 15..573 2780 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25048061..25048349 15..303 1430 99.7 Plus
3R 32079331 3R 25048442..25048603 304..465 810 100 Plus
3R 32079331 3R 25048665..25048772 466..573 540 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:02:00 has no hits.

BO16405.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:38 Download gff for BO16405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-PA 163..728 6..573 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:08 Download gff for BO16405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 243..808 6..573 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:42:21 Download gff for BO16405.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 243..808 6..573 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:42:21 Download gff for BO16405.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25048054..25048349 6..303 98 -> Plus
3R 25048442..25048603 304..465 100 -> Plus
3R 25048665..25048772 466..573 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:08 Download gff for BO16405.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20873776..20874071 6..303 98 -> Plus
arm_3R 20874164..20874325 304..465 100 -> Plus
arm_3R 20874387..20874494 466..573 100   Plus

BO16405.complete Sequence

769 bp assembled on 2006-10-11

GenBank Submission: FJ633815

> BO16405.complete
GAAGTTATCAGTCGACATGGTGACCAAGATACGTGCCCAGCTGGAGGAGA
CCTTGTCGGCCATTGTGGTCCAGTCGGTGGACAGCAACCTGGTATCCATC
TATGACCCCAGCAAGGAGCCCGCTTTGGTGTTCTTCAGGCGAGGAATACC
CATTCTATACCATGGCGAGATCAACGATGACGAAATCCTAGACTTCTTCA
ATGACAACTTAGAGCCGGCGGTCAAAGAGCTTTCCGACGACAACTTCGAG
CACCTGACTCAAGCCTCGTCGGGTGCCACTACCGGGGACTGGTTTATCTT
CTTCTCTTCGGCCGAATGTACCGTCTGTCAGCGACTCTATGCCGTTTGGG
AGTCTGTGGGCGGAAAGCTAAAGCGAAAGCTGAATATTGCCCGCATGAAC
AGTTTGGAGTCTGGAATCTCAACTGCTACGCGACTGGGAGTATTGGAAGC
ACCGGCTTTTATTTTCTTGAGGCAAGGAAAGATGTACAAATATTCAGCCA
AGCAATACAGTCCCGAAGCCTTTGTCCAGTTTGCTGAGAAGGGATATACC
CAGAGCCATCCTCAACCAGTGCCCGCAATCCCAAGTGCCGTAAACGAATT
TTTGGGCCCACTGCAAAGTTATTTTGCAGCTGAAAACATAACATCGCTGG
CGACTTTGAGTATTTTCGCCTTAGTTGCTCTCTTATTCGTTGGCAAAAAG
GTTGCCAAAATATTCAGTTCAGAGCCTGCGAAAACAAAAAATAAGTCGAA
AGCAAGCTTTCTAGACCAT

BO16405.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-RA 909 CG11790-PA 170..906 15..751 3670 99.9 Plus
CG11790-RB 738 CG11790-PB 1..735 17..751 3660 99.9 Plus
CG11790-RC 756 CG11790-PC 170..746 15..591 2870 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-RB 1116 CG11790-RB 356..1092 15..751 3670 99.9 Plus
CG11790-RA 1010 CG11790-RA 250..986 15..751 3670 99.9 Plus
CG11790-RC 1040 CG11790-RC 250..826 15..591 2870 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25048061..25048349 15..303 1430 99.7 Plus
3R 32079331 3R 25048442..25048603 304..465 810 100 Plus
3R 32079331 3R 25049272..25049431 592..751 800 100 Plus
3R 32079331 3R 25048665..25048790 466..591 630 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:59:17 has no hits.

BO16405.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:56 Download gff for BO16405.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 163..909 6..755 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:27 Download gff for BO16405.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RB 355..1105 6..758 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:54 Download gff for BO16405.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 252..986 17..753 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:57 Download gff for BO16405.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RB 355..1105 6..758 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:35 Download gff for BO16405.complete
Subject Subject Range Query Range Percent Splice Strand
CG11790-RA 252..986 17..753 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:35 Download gff for BO16405.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25049272..25049431 592..753 98   Plus
3R 25048442..25048603 304..465 100 -> Plus
3R 25048665..25048790 466..591 100 -> Plus
3R 25048063..25048349 17..303 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:54 Download gff for BO16405.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20873785..20874071 17..303 99 -> Plus
arm_3R 20874164..20874325 304..465 100 -> Plus
arm_3R 20874387..20874512 466..591 100 -> Plus
arm_3R 20874994..20875153 592..753 98   Plus

BO16405.pep Sequence

Translation from 16 to 769

> BO16405.pep
MVTKIRAQLEETLSAIVVQSVDSNLVSIYDPSKEPALVFFRRGIPILYHG
EINDDEILDFFNDNLEPAVKELSDDNFEHLTQASSGATTGDWFIFFSSAE
CTVCQRLYAVWESVGGKLKRKLNIARMNSLESGISTATRLGVLEAPAFIF
LRQGKMYKYSAKQYSPEAFVQFAEKGYTQSHPQPVPAIPSAVNEFLGPLQ
SYFAAENITSLATLSIFALVALLFVGKKVAKIFSSEPAKTKNKSKASFLD
H

BO16405.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG11790-PB 245 CG11790-PB 1..245 1..245 1239 100 Plus
CG11790-PA 302 CG11790-PA 58..302 1..245 1239 100 Plus
CG11790-PC 251 CG11790-PC 58..250 1..193 985 99.5 Plus