Clone Sequence Records
BO16405.3prime Sequence
614 bp (533 high quality bases) assembled on 2006-10-13
> BO16405.3prime
ATGGTCTAGAAAGCTTGCTTTCGACTTATTTTTTGTTTTCGCAGGCTCTG
AACTGAATATTTTGGCAACCTTTTTGCCAACGAATAAGAGAGCAACTAAG
GCGAAAATACTCAAAGTCGCCAGCGATGTTATGTTTTCAGCTGCAAAATA
ACTTTGCAGTGGGCCCAAAAATTCGTTTACGGCACTTGGGATTGCGGGCA
CTGGTTGAGGATGGCTCTGGGTATATCCCTTCTCAGCAAACTGGACAAAG
GCTTCGGGACTGTATTGCTTGGCTGAATATTTGTACATCTTTCCTTGCCT
CAAGAAAATAAAAGCCGGTGCTTCCAATACTCCCAGTCGCGTAGCAGTTG
AGATTCCAGACTCCAAACTGTTCATGCGGGCAATATTCAGCTTTCGCTTT
AGCTTTCCGCCCACAGACTCCCAAACGGCATAGAGTCGCTGACAGACGGT
ACATTCGGCCGAAGAGAAGAAGATAAACCAGTCCCCGGTAGTGGCACCCG
ACGAGGCTTGAGTCAGGTGCTCGAAGTTGTCGTCGGAAAGCTCTTTGACC
GCCGGCTCTAAGTTGTCATTGAAGAAGTCTAGGATTTCGTCATCGTTGAT
CTCGCCATGGTATA
BO16405.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-PA | 909 | CG11790-RA | 311..906 | 614..19 | 2955 | 99.8 | Minus |
CG11790-PB | 738 | CG11790-RB | 140..735 | 614..19 | 2955 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:46:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-RB | 1116 | CG11790-RB | 497..1092 | 614..19 | 2965 | 99.8 | Minus |
CG11790-RA | 1010 | CG11790-RA | 391..986 | 614..19 | 2965 | 99.8 | Minus |
CG11790-RC | 1040 | CG11790-RC | 391..826 | 614..179 | 2165 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:46:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25048442..25048603 | 466..305 | 810 | 100 | Minus |
3R | 32079331 | 3R | 25049272..25049431 | 178..19 | 800 | 100 | Minus |
3R | 32079331 | 3R | 25048202..25048349 | 614..467 | 725 | 99.3 | Minus |
3R | 32079331 | 3R | 25048665..25048790 | 304..179 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:46:31 has no hits.
BO16405.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:38 Download gff for
BO16405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-PB | 141..738 | 15..613 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:37 Download gff for
BO16405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 392..993 | 12..613 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:15 Download gff for
BO16405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 392..993 | 12..613 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:15 Download gff for
BO16405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25048203..25048349 | 467..613 | 99 | -> | Minus |
3R | 25048442..25048603 | 305..466 | 100 | -> | Minus |
3R | 25048665..25048790 | 179..304 | 100 | -> | Minus |
3R | 25049272..25049430 | 20..178 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:37 Download gff for
BO16405.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20873925..20874071 | 467..613 | 99 | -> | Minus |
arm_3R | 20874164..20874325 | 305..466 | 100 | -> | Minus |
arm_3R | 20874387..20874512 | 179..304 | 100 | -> | Minus |
arm_3R | 20874994..20875152 | 20..178 | 100 | -> | Minus |
BO16405.5prime Sequence
573 bp (537 high quality bases) assembled on 2006-10-13
> BO16405.5prime
GAAGTTATCAGTCGACATGGTGACCAAGATACGTGCCCAGCTGGAGGAGA
CCTTGTCGGCCATTGTGGTCCAGTCGGTGGACAGCAACCTGGTATCCATC
TATGACCCCAGCAAGGAGCCCGCTTTGGTGTTCTTCAGGCGAGGAATACC
CATTCTATACCATGGCGAGATCAACGATGACGAAATCCTAGACTTCTTCA
ATGACAACTTAGAGCCGGCGGTCAAAGAGCTTTCCGACGACAACTTCGAG
CACCTGACTCAAGCCTCGTCGGGTGCCACTACCGGGGACTGGTTTATCTT
CTTCTCTTCGGCCGAATGTACCGTCTGTCAGCGACTCTATGCCGTTTGGG
AGTCTGTGGGCGGAAAGCTAAAGCGAAAGCTGAATATTGCCCGCATGAAC
AGTTTGGAGTCTGGAATCTCAACTGCTACGCGACTGGGAGTATTGGAAGC
ACCGGCTTTTATTTTCTTGAGGCAAGGAAAGATGTACAAATATTCAGCCA
AGCAATACAGTCCCGAAGCCTTTGTCCAGTTTGCTGAGAAGGGATATACC
CAGAGCCATCCTCAACCAGTGCC
BO16405.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-PA | 909 | CG11790-RA | 170..728 | 15..573 | 2770 | 99.8 | Plus |
CG11790-PB | 738 | CG11790-RB | 1..557 | 17..573 | 2760 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-RC | 1040 | CG11790-RC | 250..808 | 15..573 | 2780 | 99.8 | Plus |
CG11790-RB | 1116 | CG11790-RB | 356..914 | 15..573 | 2780 | 99.8 | Plus |
CG11790-RA | 1010 | CG11790-RA | 250..808 | 15..573 | 2780 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:01:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25048061..25048349 | 15..303 | 1430 | 99.7 | Plus |
3R | 32079331 | 3R | 25048442..25048603 | 304..465 | 810 | 100 | Plus |
3R | 32079331 | 3R | 25048665..25048772 | 466..573 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:02:00 has no hits.
BO16405.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:38 Download gff for
BO16405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-PA | 163..728 | 6..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:08 Download gff for
BO16405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 243..808 | 6..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:42:21 Download gff for
BO16405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 243..808 | 6..573 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:42:21 Download gff for
BO16405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25048054..25048349 | 6..303 | 98 | -> | Plus |
3R | 25048442..25048603 | 304..465 | 100 | -> | Plus |
3R | 25048665..25048772 | 466..573 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:08 Download gff for
BO16405.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20873776..20874071 | 6..303 | 98 | -> | Plus |
arm_3R | 20874164..20874325 | 304..465 | 100 | -> | Plus |
arm_3R | 20874387..20874494 | 466..573 | 100 | | Plus |
BO16405.complete Sequence
769 bp assembled on 2006-10-11
GenBank Submission: FJ633815
> BO16405.complete
GAAGTTATCAGTCGACATGGTGACCAAGATACGTGCCCAGCTGGAGGAGA
CCTTGTCGGCCATTGTGGTCCAGTCGGTGGACAGCAACCTGGTATCCATC
TATGACCCCAGCAAGGAGCCCGCTTTGGTGTTCTTCAGGCGAGGAATACC
CATTCTATACCATGGCGAGATCAACGATGACGAAATCCTAGACTTCTTCA
ATGACAACTTAGAGCCGGCGGTCAAAGAGCTTTCCGACGACAACTTCGAG
CACCTGACTCAAGCCTCGTCGGGTGCCACTACCGGGGACTGGTTTATCTT
CTTCTCTTCGGCCGAATGTACCGTCTGTCAGCGACTCTATGCCGTTTGGG
AGTCTGTGGGCGGAAAGCTAAAGCGAAAGCTGAATATTGCCCGCATGAAC
AGTTTGGAGTCTGGAATCTCAACTGCTACGCGACTGGGAGTATTGGAAGC
ACCGGCTTTTATTTTCTTGAGGCAAGGAAAGATGTACAAATATTCAGCCA
AGCAATACAGTCCCGAAGCCTTTGTCCAGTTTGCTGAGAAGGGATATACC
CAGAGCCATCCTCAACCAGTGCCCGCAATCCCAAGTGCCGTAAACGAATT
TTTGGGCCCACTGCAAAGTTATTTTGCAGCTGAAAACATAACATCGCTGG
CGACTTTGAGTATTTTCGCCTTAGTTGCTCTCTTATTCGTTGGCAAAAAG
GTTGCCAAAATATTCAGTTCAGAGCCTGCGAAAACAAAAAATAAGTCGAA
AGCAAGCTTTCTAGACCAT
BO16405.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-RA | 909 | CG11790-PA | 170..906 | 15..751 | 3670 | 99.9 | Plus |
CG11790-RB | 738 | CG11790-PB | 1..735 | 17..751 | 3660 | 99.9 | Plus |
CG11790-RC | 756 | CG11790-PC | 170..746 | 15..591 | 2870 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-RB | 1116 | CG11790-RB | 356..1092 | 15..751 | 3670 | 99.9 | Plus |
CG11790-RA | 1010 | CG11790-RA | 250..986 | 15..751 | 3670 | 99.9 | Plus |
CG11790-RC | 1040 | CG11790-RC | 250..826 | 15..591 | 2870 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25048061..25048349 | 15..303 | 1430 | 99.7 | Plus |
3R | 32079331 | 3R | 25048442..25048603 | 304..465 | 810 | 100 | Plus |
3R | 32079331 | 3R | 25049272..25049431 | 592..751 | 800 | 100 | Plus |
3R | 32079331 | 3R | 25048665..25048790 | 466..591 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:59:17 has no hits.
BO16405.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:56 Download gff for
BO16405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 163..909 | 6..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:27 Download gff for
BO16405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RB | 355..1105 | 6..758 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:54 Download gff for
BO16405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 252..986 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:57 Download gff for
BO16405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RB | 355..1105 | 6..758 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:07:35 Download gff for
BO16405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11790-RA | 252..986 | 17..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:07:35 Download gff for
BO16405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25049272..25049431 | 592..753 | 98 | | Plus |
3R | 25048442..25048603 | 304..465 | 100 | -> | Plus |
3R | 25048665..25048790 | 466..591 | 100 | -> | Plus |
3R | 25048063..25048349 | 17..303 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:54 Download gff for
BO16405.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20873785..20874071 | 17..303 | 99 | -> | Plus |
arm_3R | 20874164..20874325 | 304..465 | 100 | -> | Plus |
arm_3R | 20874387..20874512 | 466..591 | 100 | -> | Plus |
arm_3R | 20874994..20875153 | 592..753 | 98 | | Plus |
BO16405.pep Sequence
Translation from 16 to 769
> BO16405.pep
MVTKIRAQLEETLSAIVVQSVDSNLVSIYDPSKEPALVFFRRGIPILYHG
EINDDEILDFFNDNLEPAVKELSDDNFEHLTQASSGATTGDWFIFFSSAE
CTVCQRLYAVWESVGGKLKRKLNIARMNSLESGISTATRLGVLEAPAFIF
LRQGKMYKYSAKQYSPEAFVQFAEKGYTQSHPQPVPAIPSAVNEFLGPLQ
SYFAAENITSLATLSIFALVALLFVGKKVAKIFSSEPAKTKNKSKASFLD
H
BO16405.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11790-PB | 245 | CG11790-PB | 1..245 | 1..245 | 1239 | 100 | Plus |
CG11790-PA | 302 | CG11790-PA | 58..302 | 1..245 | 1239 | 100 | Plus |
CG11790-PC | 251 | CG11790-PC | 58..250 | 1..193 | 985 | 99.5 | Plus |