Clone Sequence Records
BO16406.3prime Sequence
251 bp (251 high quality bases) assembled on 2006-10-13
> BO16406.3prime
ATGGTCTAGAAAGCTTGCTAGAAACGTTAAGCAGCGGCAGTAGCAGCAAC
AAGAACAACAGCAGCAACAACAACTACTACAACGAACAGAGACGACGTCG
AAGGAAAGATTTTTACTCGCGTCGCGGTATACTTCAACTGTTTTTGAACT
TTTATTGCGTGTTTGCTGCTGCGACAAAACTTGCGCGGCGCCACAAAGCG
GAGAAAACGTTGACCGCGTGTGTGTGGCGGAGAGCATGTCGACTGATAAC
T
BO16406.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32711-PA | 222 | CG32711-RA | 1..219 | 237..19 | 1095 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:19:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lawc-RA | 1072 | CG32711-RA | 124..343 | 238..19 | 1100 | 100 | Minus |
lawc-RB | 1332 | CG32711-RB | 124..343 | 238..19 | 1100 | 100 | Minus |
lawc-RD | 1870 | CG32711-RD | 124..343 | 238..19 | 1100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:19:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8409756..8409975 | 19..238 | 1100 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:19:37 has no hits.
BO16406.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:39 Download gff for
BO16406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32711-PA | 1..222 | 18..237 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:31 Download gff for
BO16406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lawc-RD | 120..343 | 19..244 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:27 Download gff for
BO16406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lawc-RD | 120..343 | 19..244 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:27 Download gff for
BO16406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8409756..8409979 | 19..244 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:31 Download gff for
BO16406.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8303789..8304012 | 19..244 | 99 | | Plus |
BO16406.5prime Sequence
251 bp (251 high quality bases) assembled on 2006-10-13
> BO16406.5prime
GAAGTTATCAGTCGACATGCTCTCCGCCACACACACGCGGTCAACGTTTT
CTCCGCTTTGTGGCGCCGCGCAAGTTTTGTCGCAGCAGCAAACACGCAAT
AAAAGTTCAAAAACAGTTGAAGTATACCGCGACGCGAGTAAAAATCTTTC
CTTCGACGTCGTCTCTGTTCGTTGTAGTAGTTGTTGTTGCTGCTGTTGTT
CTTGTTGCTGCTACTGCCGCTGCTTAACGTTTCTAGCAAGCTTTCTAGAC
C
BO16406.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32711-PA | 222 | CG32711-RA | 1..219 | 17..235 | 1095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:05:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lawc-RA | 1072 | CG32711-RA | 124..343 | 16..235 | 1100 | 100 | Plus |
lawc-RB | 1332 | CG32711-RB | 124..343 | 16..235 | 1100 | 100 | Plus |
lawc-RD | 1870 | CG32711-RD | 124..343 | 16..235 | 1100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8409756..8409975 | 235..16 | 1100 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:05:33 has no hits.
BO16406.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:40 Download gff for
BO16406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32711-PA | 1..222 | 17..236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:09:52 Download gff for
BO16406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lawc-RD | 120..343 | 10..235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:44 Download gff for
BO16406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lawc-RD | 120..343 | 10..235 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:31:44 Download gff for
BO16406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8409756..8409979 | 10..235 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:09:52 Download gff for
BO16406.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8303789..8304012 | 10..235 | 99 | | Minus |
BO16406.complete Sequence
253 bp assembled on 2006-10-11
GenBank Submission: FJ633816
> BO16406.complete
GAAGTTATCAGTCGACATGCTCTCCGCCACACACACGCGGTCAACGTTTT
CTCCGCTTTGTGGCGCCGCGCAAGTTTTGTCGCAGCAGCAAACACGCAAT
AAAAGTTCAAAAACAGTTGAAGTATACCGCGACGCGAGTAAAAATCTTTC
CTTCGACGTCGTCTCTGTTCGTTGTAGTAGTTGTTGTTGCTGCTGTTGTT
CTTGTTGCTGCTACTGCCGCTGCTTAACGTTTCTAGCAAGCTTTCTAGAC
CAT
BO16406.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:05:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lawc-RA | 222 | CG32711-PA | 1..219 | 17..235 | 1095 | 100 | Plus |
lawc-RB | 222 | CG32711-PB | 1..219 | 17..235 | 1095 | 100 | Plus |
lawc-RD | 222 | CG32711-PD | 1..219 | 17..235 | 1095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lawc-RA | 1072 | CG32711-RA | 124..343 | 16..235 | 1100 | 100 | Plus |
lawc-RB | 1332 | CG32711-RB | 124..343 | 16..235 | 1100 | 100 | Plus |
lawc-RD | 1870 | CG32711-RD | 124..343 | 16..235 | 1100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8409756..8409975 | 235..16 | 1100 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:05:53 has no hits.
BO16406.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:09 Download gff for
BO16406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32711-RA | 1..222 | 17..236 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:25 Download gff for
BO16406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32711-RA | 117..340 | 10..235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:15 Download gff for
BO16406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lawc-RD | 125..343 | 17..237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 22:58:09 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:10 Download gff for
BO16406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
lawc-RD | 125..343 | 17..237 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:10 Download gff for
BO16406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8409754..8409974 | 17..237 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:15 Download gff for
BO16406.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8303787..8304007 | 17..237 | 99 | | Minus |
BO16406.pep Sequence
Translation from 16 to 253
> BO16406.pep
MLSATHTRSTFSPLCGAAQVLSQQQTRNKSSKTVEVYRDASKNLSFDVVS
VRCSSCCCCCCSCCCYCRCLTFLASFLDH
BO16406.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
lawc-PA | 73 | CG32711-PA | 1..73 | 1..73 | 406 | 100 | Plus |
lawc-PB | 73 | CG32711-PB | 1..73 | 1..73 | 406 | 100 | Plus |
lawc-PD | 73 | CG32711-PD | 1..73 | 1..73 | 406 | 100 | Plus |
lawc-PC | 73 | CG32711-PC | 1..73 | 1..73 | 406 | 100 | Plus |