Clone Sequence Records
BO16407.3prime Sequence
623 bp (580 high quality bases) assembled on 2006-10-13
> BO16407.3prime
ATGGTCTAGAAAGCTTGCCGACAGCTGGACGTCCTCCAGTTGCCGCAGCT
TCTCATTGGAGGTGATCTCCGCCTCAACCACCTCGCGGCGGAAGACGACC
TTGTAGGCGTAGGCGGTGATGGCGGAGGAGCTCAGCGGGGCCAGCCAGTA
GATCCAGTTGCTCTCGAAGTGCTTGTTCCACAGGGCGGGGGCGAACGACC
TGGCCGGGTTCATGCTGCCGCCGGTGAAGGGACCGGCAGCGCAGGCGAGA
CAGGCGATGGCCAGGCCAAATCGAATGCCCACGGAGTCATGGAACTTGGA
GTTGCGCGGATCCCACACTCCGCAGCAGACGATGACCAGGATGGAGGTGA
TTACGAACTCGATGCCGAGGGCCTGGCCCGTGGTTACGCTGGTGTGGGGC
AAGGTCACGCAGAGCCCAGCGCCCACCGTAAGTGTGGGCGAGGGAAGCAG
GACCATGAGCAGGCCGTAGCCGATGAAGGCGCCCAGCATCTGGGCGGCGA
AGTAGGCAAATGCCATGCGCAGGGTGACCATCTCGTAGATGTAGGCGGCC
ACGGTCACGGCGGGATTCAGATGGGCACCGGAGACGCAGCCAAAGCACTG
GATGGCGATGAGGACGGCGAAAC
BO16407.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4019-PA | 750 | CG4019-RA | 145..747 | 621..19 | 3015 | 100 | Minus |
CG4019-PD | 750 | CG4019-RD | 145..747 | 621..19 | 3015 | 100 | Minus |
CG4019-PB | 750 | CG4019-RB | 145..747 | 621..19 | 3015 | 100 | Minus |
CG4019-PC | 786 | CG4019-RC | 181..783 | 621..19 | 3015 | 100 | Minus |
CG17664-PA | 798 | CG17664-RA | 307..344 | 495..458 | 140 | 94.7 | Minus |
CG17664-PB | 798 | CG17664-RB | 307..344 | 495..458 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4019-RF | 1271 | CG4019-RF | 425..1027 | 621..19 | 3015 | 100 | Minus |
CG4019-RE | 1183 | CG4019-RE | 337..939 | 621..19 | 3015 | 100 | Minus |
CG4019-RC | 1138 | CG4019-RC | 292..894 | 621..19 | 3015 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23608131..23608518 | 234..621 | 1940 | 100 | Plus |
2R | 25286936 | 2R | 23607836..23608051 | 19..234 | 1080 | 100 | Plus |
2R | 25286936 | 2R | 23604625..23604771 | 458..604 | 360 | 83 | Plus |
2R | 25286936 | 2R | 23606358..23606427 | 543..612 | 185 | 84.3 | Plus |
Blast to na_te.dros performed 2015-02-10 21:14:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
diver2 | 4917 | diver2 DIVER2 4917bp | 4100..4150 | 11..63 | 116 | 71.7 | Plus |
BO16407.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:41 Download gff for
BO16407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-PC | 179..786 | 15..623 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:50 Download gff for
BO16407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-RC | 290..898 | 14..623 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:43 Download gff for
BO16407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-RC | 290..898 | 14..623 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:43 Download gff for
BO16407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23607832..23608051 | 14..234 | 99 | <- | Plus |
2R | 23608132..23608520 | 235..623 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:50 Download gff for
BO16407.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19495355..19495574 | 14..234 | 99 | <- | Plus |
arm_2R | 19495655..19496043 | 235..623 | 99 | | Plus |
BO16407.5prime Sequence
662 bp (569 high quality bases) assembled on 2006-10-13
> BO16407.5prime
GAAGTTATCAGTCGACATGAAGGGATCGACGCTGGACAAAATCTCCGCCT
TCCTCGGCGAGCTCATCGGCACCGGCATCCTGGTCTTCCTGGGCTGCATG
GGTTGCGTGAAGACGGACCTCTTTCCCAACAACCATCTGCAGATTGTGCT
GAACTTCGGCTTCGCCGTCCTCATCGCCATCCAGTGCTTTGGCTGCGTCT
CCGGTGCCCATCTGAATCCCGCCGTGACCGTGGCCGCCTACATCTACGAG
ATGGTCACCCTGCGCATGGCATTTGCCTACTTCGCCGCCCAGATGCTGGG
CGCCTTCATCGGCTACGGCCTGCTCATGGTCCTGCTTCCCTCGCCCACAC
TTACGGTGGGCGCTGGGCTCTGCGTGACCTTGCCCCACACCAGCGTAACC
ACGGGCCAGGCCCTCGGCATCGAGTTCGTAATCACCTCCATCCTGGTCAT
CGTCTGCTGCGGAGTGTGGGATCCGCGCAACTCCAAGTTCCATGACTCCG
TGGGCATTCGATTTGGCCTGGCCATCGCCTGTCTCGCCTGCGCTGCCGGT
CCCTTCACCGGCGGCAGCATGAACCCGGCCAGGTCGTTCGCCCCCGCCCT
GTGGAACAAGCACTTCGAGAGCAACTGGATCTACTGGCTGGCCCCGCTGA
GCTCCTCCGGCA
BO16407.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4019-PA | 750 | CG4019-RA | 1..643 | 17..659 | 3215 | 100 | Plus |
CG4019-PD | 750 | CG4019-RD | 1..643 | 17..659 | 3215 | 100 | Plus |
CG4019-PB | 750 | CG4019-RB | 1..643 | 17..659 | 3215 | 100 | Plus |
CG4019-PC | 786 | CG4019-RC | 37..679 | 17..659 | 3215 | 100 | Plus |
CG17664-PA | 798 | CG17664-RA | 307..344 | 287..324 | 140 | 94.7 | Plus |
CG17664-PB | 798 | CG17664-RB | 307..344 | 287..324 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4019-RF | 1271 | CG4019-RF | 281..923 | 17..659 | 3215 | 100 | Plus |
CG4019-RE | 1183 | CG4019-RE | 193..835 | 17..659 | 3215 | 100 | Plus |
CG4019-RC | 1138 | CG4019-RC | 148..790 | 17..659 | 3215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23608131..23608662 | 548..17 | 2660 | 100 | Minus |
2R | 25286936 | 2R | 23607940..23608051 | 659..548 | 560 | 100 | Minus |
2R | 25286936 | 2R | 23604625..23604800 | 324..149 | 400 | 81.8 | Minus |
2R | 25286936 | 2R | 23606358..23606443 | 239..154 | 205 | 82.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:48:52 has no hits.
BO16407.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:41 Download gff for
BO16407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-PC | 29..680 | 8..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:07 Download gff for
BO16407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-RC | 140..791 | 8..661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:34 Download gff for
BO16407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-RC | 140..791 | 8..661 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:34 Download gff for
BO16407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23607938..23608051 | 548..661 | 99 | <- | Minus |
2R | 23608132..23608670 | 8..547 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:07 Download gff for
BO16407.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19495461..19495574 | 548..661 | 99 | <- | Minus |
arm_2R | 19495655..19496193 | 8..547 | 99 | | Minus |
BO16407.complete Sequence
781 bp assembled on 2006-10-11
GenBank Submission: FJ633817
> BO16407.complete
GAAGTTATCAGTCGACATGAAGGGATCGACGCTGGACAAAATCTCCGCCT
TCCTCGGCGAGCTCATCGGCACCGGCATCCTGGTCTTCCTGGGCTGCATG
GGTTGCGTGAAGACGGACCTCTTTCCCAACAACCATCTGCAGATTGTGCT
GAACTTCGGCTTCGCCGTCCTCATCGCCATCCAGTGCTTTGGCTGCGTCT
CCGGTGCCCATCTGAATCCCGCCGTGACCGTGGCCGCCTACATCTACGAG
ATGGTCACCCTGCGCATGGCATTTGCCTACTTCGCCGCCCAGATGCTGGG
CGCCTTCATCGGCTACGGCCTGCTCATGGTCCTGCTTCCCTCGCCCACAC
TTACGGTGGGCGCTGGGCTCTGCGTGACCTTGCCCCACACCAGCGTAACC
ACGGGCCAGGCCCTCGGCATCGAGTTCGTAATCACCTCCATCCTGGTCAT
CGTCTGCTGCGGAGTGTGGGATCCGCGCAACTCCAAGTTCCATGACTCCG
TGGGCATTCGATTTGGCCTGGCCATCGCCTGTCTCGCCTGCGCTGCCGGT
CCCTTCACCGGCGGCAGCATGAACCCGGCCAGGTCGTTCGCCCCCGCCCT
GTGGAACAAGCACTTCGAGAGCAACTGGATCTACTGGCTGGCCCCGCTGA
GCTCCTCCGCCATCACCGCCTACGCCTACAAGGTCGTCTTCCGCCGCGAG
GTGGTTGAGGCGGAGATCACCTCCAATGAGAAGCTGCGGCAACTGGAGGA
CGTCCAGCTGTCGGCAAGCTTTCTAGACCAT
BO16407.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4019-RF | 894 | CG4019-PF | 145..891 | 17..763 | 3735 | 100 | Plus |
CG4019-RE | 861 | CG4019-PE | 112..858 | 17..763 | 3735 | 100 | Plus |
CG4019-RC | 786 | CG4019-PC | 37..783 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4019-RF | 1271 | CG4019-RF | 281..1027 | 17..763 | 3735 | 100 | Plus |
CG4019-RE | 1183 | CG4019-RE | 193..939 | 17..763 | 3735 | 100 | Plus |
CG4019-RC | 1138 | CG4019-RC | 148..894 | 17..763 | 3735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23608131..23608662 | 548..17 | 2660 | 100 | Minus |
2R | 25286936 | 2R | 23607836..23608051 | 763..548 | 1080 | 100 | Minus |
2R | 25286936 | 2R | 23604625..23604800 | 324..149 | 400 | 81.8 | Minus |
2R | 25286936 | 2R | 23606358..23606443 | 239..154 | 205 | 82.6 | Minus |
Blast to na_te.dros performed 2014-11-28 00:42:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
diver2 | 4917 | diver2 DIVER2 4917bp | 4100..4150 | 771..719 | 116 | 71.7 | Minus |
BO16407.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:01 Download gff for
BO16407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-RB | 1..750 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:28 Download gff for
BO16407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-RB | 90..848 | 8..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:55 Download gff for
BO16407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-RC | 148..894 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:01 Download gff for
BO16407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-RB | 90..848 | 8..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:33 Download gff for
BO16407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4019-RC | 148..894 | 17..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:33 Download gff for
BO16407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23607834..23608051 | 548..765 | 99 | <- | Minus |
2R | 23608132..23608662 | 17..547 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:55 Download gff for
BO16407.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19495357..19495574 | 548..765 | 99 | <- | Minus |
arm_2R | 19495655..19496185 | 17..547 | 100 | | Minus |
BO16407.pep Sequence
Translation from 16 to 781
> BO16407.pep
MKGSTLDKISAFLGELIGTGILVFLGCMGCVKTDLFPNNHLQIVLNFGFA
VLIAIQCFGCVSGAHLNPAVTVAAYIYEMVTLRMAFAYFAAQMLGAFIGY
GLLMVLLPSPTLTVGAGLCVTLPHTSVTTGQALGIEFVITSILVIVCCGV
WDPRNSKFHDSVGIRFGLAIACLACAAGPFTGGSMNPARSFAPALWNKHF
ESNWIYWLAPLSSSAITAYAYKVVFRREVVEAEITSNEKLRQLEDVQLSA
SFLDH
BO16407.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4019-PB | 249 | CG4019-PB | 1..249 | 1..249 | 1295 | 100 | Plus |
CG4019-PD | 249 | CG4019-PD | 1..249 | 1..249 | 1295 | 100 | Plus |
CG4019-PA | 249 | CG4019-PA | 1..249 | 1..249 | 1295 | 100 | Plus |
CG4019-PC | 261 | CG4019-PC | 13..261 | 1..249 | 1295 | 100 | Plus |
CG4019-PE | 286 | CG4019-PE | 38..286 | 1..249 | 1295 | 100 | Plus |