Clone BO16407 Report

Search the DGRC for BO16407

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:7
Vector:pDNR-Dual
Associated Gene/TranscriptCG4019-RA
Protein status:BO16407.pep: validated full length
Sequenced Size:781

Clone Sequence Records

BO16407.3prime Sequence

623 bp (580 high quality bases) assembled on 2006-10-13

> BO16407.3prime
ATGGTCTAGAAAGCTTGCCGACAGCTGGACGTCCTCCAGTTGCCGCAGCT
TCTCATTGGAGGTGATCTCCGCCTCAACCACCTCGCGGCGGAAGACGACC
TTGTAGGCGTAGGCGGTGATGGCGGAGGAGCTCAGCGGGGCCAGCCAGTA
GATCCAGTTGCTCTCGAAGTGCTTGTTCCACAGGGCGGGGGCGAACGACC
TGGCCGGGTTCATGCTGCCGCCGGTGAAGGGACCGGCAGCGCAGGCGAGA
CAGGCGATGGCCAGGCCAAATCGAATGCCCACGGAGTCATGGAACTTGGA
GTTGCGCGGATCCCACACTCCGCAGCAGACGATGACCAGGATGGAGGTGA
TTACGAACTCGATGCCGAGGGCCTGGCCCGTGGTTACGCTGGTGTGGGGC
AAGGTCACGCAGAGCCCAGCGCCCACCGTAAGTGTGGGCGAGGGAAGCAG
GACCATGAGCAGGCCGTAGCCGATGAAGGCGCCCAGCATCTGGGCGGCGA
AGTAGGCAAATGCCATGCGCAGGGTGACCATCTCGTAGATGTAGGCGGCC
ACGGTCACGGCGGGATTCAGATGGGCACCGGAGACGCAGCCAAAGCACTG
GATGGCGATGAGGACGGCGAAAC

BO16407.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4019-PA 750 CG4019-RA 145..747 621..19 3015 100 Minus
CG4019-PD 750 CG4019-RD 145..747 621..19 3015 100 Minus
CG4019-PB 750 CG4019-RB 145..747 621..19 3015 100 Minus
CG4019-PC 786 CG4019-RC 181..783 621..19 3015 100 Minus
CG17664-PA 798 CG17664-RA 307..344 495..458 140 94.7 Minus
CG17664-PB 798 CG17664-RB 307..344 495..458 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4019-RF 1271 CG4019-RF 425..1027 621..19 3015 100 Minus
CG4019-RE 1183 CG4019-RE 337..939 621..19 3015 100 Minus
CG4019-RC 1138 CG4019-RC 292..894 621..19 3015 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23608131..23608518 234..621 1940 100 Plus
2R 25286936 2R 23607836..23608051 19..234 1080 100 Plus
2R 25286936 2R 23604625..23604771 458..604 360 83 Plus
2R 25286936 2R 23606358..23606427 543..612 185 84.3 Plus
Blast to na_te.dros performed 2015-02-10 21:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 4100..4150 11..63 116 71.7 Plus

BO16407.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:41 Download gff for BO16407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4019-PC 179..786 15..623 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:04:50 Download gff for BO16407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4019-RC 290..898 14..623 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:43 Download gff for BO16407.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4019-RC 290..898 14..623 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:43 Download gff for BO16407.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23607832..23608051 14..234 99 <- Plus
2R 23608132..23608520 235..623 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:04:50 Download gff for BO16407.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19495355..19495574 14..234 99 <- Plus
arm_2R 19495655..19496043 235..623 99   Plus

BO16407.5prime Sequence

662 bp (569 high quality bases) assembled on 2006-10-13

> BO16407.5prime
GAAGTTATCAGTCGACATGAAGGGATCGACGCTGGACAAAATCTCCGCCT
TCCTCGGCGAGCTCATCGGCACCGGCATCCTGGTCTTCCTGGGCTGCATG
GGTTGCGTGAAGACGGACCTCTTTCCCAACAACCATCTGCAGATTGTGCT
GAACTTCGGCTTCGCCGTCCTCATCGCCATCCAGTGCTTTGGCTGCGTCT
CCGGTGCCCATCTGAATCCCGCCGTGACCGTGGCCGCCTACATCTACGAG
ATGGTCACCCTGCGCATGGCATTTGCCTACTTCGCCGCCCAGATGCTGGG
CGCCTTCATCGGCTACGGCCTGCTCATGGTCCTGCTTCCCTCGCCCACAC
TTACGGTGGGCGCTGGGCTCTGCGTGACCTTGCCCCACACCAGCGTAACC
ACGGGCCAGGCCCTCGGCATCGAGTTCGTAATCACCTCCATCCTGGTCAT
CGTCTGCTGCGGAGTGTGGGATCCGCGCAACTCCAAGTTCCATGACTCCG
TGGGCATTCGATTTGGCCTGGCCATCGCCTGTCTCGCCTGCGCTGCCGGT
CCCTTCACCGGCGGCAGCATGAACCCGGCCAGGTCGTTCGCCCCCGCCCT
GTGGAACAAGCACTTCGAGAGCAACTGGATCTACTGGCTGGCCCCGCTGA
GCTCCTCCGGCA

BO16407.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4019-PA 750 CG4019-RA 1..643 17..659 3215 100 Plus
CG4019-PD 750 CG4019-RD 1..643 17..659 3215 100 Plus
CG4019-PB 750 CG4019-RB 1..643 17..659 3215 100 Plus
CG4019-PC 786 CG4019-RC 37..679 17..659 3215 100 Plus
CG17664-PA 798 CG17664-RA 307..344 287..324 140 94.7 Plus
CG17664-PB 798 CG17664-RB 307..344 287..324 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4019-RF 1271 CG4019-RF 281..923 17..659 3215 100 Plus
CG4019-RE 1183 CG4019-RE 193..835 17..659 3215 100 Plus
CG4019-RC 1138 CG4019-RC 148..790 17..659 3215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23608131..23608662 548..17 2660 100 Minus
2R 25286936 2R 23607940..23608051 659..548 560 100 Minus
2R 25286936 2R 23604625..23604800 324..149 400 81.8 Minus
2R 25286936 2R 23606358..23606443 239..154 205 82.6 Minus
Blast to na_te.dros performed on 2015-02-12 03:48:52 has no hits.

BO16407.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:41 Download gff for BO16407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4019-PC 29..680 8..661 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:07 Download gff for BO16407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4019-RC 140..791 8..661 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:34 Download gff for BO16407.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4019-RC 140..791 8..661 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:34 Download gff for BO16407.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23607938..23608051 548..661 99 <- Minus
2R 23608132..23608670 8..547 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:07 Download gff for BO16407.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19495461..19495574 548..661 99 <- Minus
arm_2R 19495655..19496193 8..547 99   Minus

BO16407.complete Sequence

781 bp assembled on 2006-10-11

GenBank Submission: FJ633817

> BO16407.complete
GAAGTTATCAGTCGACATGAAGGGATCGACGCTGGACAAAATCTCCGCCT
TCCTCGGCGAGCTCATCGGCACCGGCATCCTGGTCTTCCTGGGCTGCATG
GGTTGCGTGAAGACGGACCTCTTTCCCAACAACCATCTGCAGATTGTGCT
GAACTTCGGCTTCGCCGTCCTCATCGCCATCCAGTGCTTTGGCTGCGTCT
CCGGTGCCCATCTGAATCCCGCCGTGACCGTGGCCGCCTACATCTACGAG
ATGGTCACCCTGCGCATGGCATTTGCCTACTTCGCCGCCCAGATGCTGGG
CGCCTTCATCGGCTACGGCCTGCTCATGGTCCTGCTTCCCTCGCCCACAC
TTACGGTGGGCGCTGGGCTCTGCGTGACCTTGCCCCACACCAGCGTAACC
ACGGGCCAGGCCCTCGGCATCGAGTTCGTAATCACCTCCATCCTGGTCAT
CGTCTGCTGCGGAGTGTGGGATCCGCGCAACTCCAAGTTCCATGACTCCG
TGGGCATTCGATTTGGCCTGGCCATCGCCTGTCTCGCCTGCGCTGCCGGT
CCCTTCACCGGCGGCAGCATGAACCCGGCCAGGTCGTTCGCCCCCGCCCT
GTGGAACAAGCACTTCGAGAGCAACTGGATCTACTGGCTGGCCCCGCTGA
GCTCCTCCGCCATCACCGCCTACGCCTACAAGGTCGTCTTCCGCCGCGAG
GTGGTTGAGGCGGAGATCACCTCCAATGAGAAGCTGCGGCAACTGGAGGA
CGTCCAGCTGTCGGCAAGCTTTCTAGACCAT

BO16407.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4019-RF 894 CG4019-PF 145..891 17..763 3735 100 Plus
CG4019-RE 861 CG4019-PE 112..858 17..763 3735 100 Plus
CG4019-RC 786 CG4019-PC 37..783 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4019-RF 1271 CG4019-RF 281..1027 17..763 3735 100 Plus
CG4019-RE 1183 CG4019-RE 193..939 17..763 3735 100 Plus
CG4019-RC 1138 CG4019-RC 148..894 17..763 3735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23608131..23608662 548..17 2660 100 Minus
2R 25286936 2R 23607836..23608051 763..548 1080 100 Minus
2R 25286936 2R 23604625..23604800 324..149 400 81.8 Minus
2R 25286936 2R 23606358..23606443 239..154 205 82.6 Minus
Blast to na_te.dros performed 2014-11-28 00:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 4100..4150 771..719 116 71.7 Minus

BO16407.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:01 Download gff for BO16407.complete
Subject Subject Range Query Range Percent Splice Strand
CG4019-RB 1..750 17..767 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:28 Download gff for BO16407.complete
Subject Subject Range Query Range Percent Splice Strand
CG4019-RB 90..848 8..768 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:55 Download gff for BO16407.complete
Subject Subject Range Query Range Percent Splice Strand
CG4019-RC 148..894 17..765 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:01 Download gff for BO16407.complete
Subject Subject Range Query Range Percent Splice Strand
CG4019-RB 90..848 8..768 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:33 Download gff for BO16407.complete
Subject Subject Range Query Range Percent Splice Strand
CG4019-RC 148..894 17..765 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:33 Download gff for BO16407.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23607834..23608051 548..765 99 <- Minus
2R 23608132..23608662 17..547 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:55 Download gff for BO16407.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19495357..19495574 548..765 99 <- Minus
arm_2R 19495655..19496185 17..547 100   Minus

BO16407.pep Sequence

Translation from 16 to 781

> BO16407.pep
MKGSTLDKISAFLGELIGTGILVFLGCMGCVKTDLFPNNHLQIVLNFGFA
VLIAIQCFGCVSGAHLNPAVTVAAYIYEMVTLRMAFAYFAAQMLGAFIGY
GLLMVLLPSPTLTVGAGLCVTLPHTSVTTGQALGIEFVITSILVIVCCGV
WDPRNSKFHDSVGIRFGLAIACLACAAGPFTGGSMNPARSFAPALWNKHF
ESNWIYWLAPLSSSAITAYAYKVVFRREVVEAEITSNEKLRQLEDVQLSA
SFLDH

BO16407.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG4019-PB 249 CG4019-PB 1..249 1..249 1295 100 Plus
CG4019-PD 249 CG4019-PD 1..249 1..249 1295 100 Plus
CG4019-PA 249 CG4019-PA 1..249 1..249 1295 100 Plus
CG4019-PC 261 CG4019-PC 13..261 1..249 1295 100 Plus
CG4019-PE 286 CG4019-PE 38..286 1..249 1295 100 Plus