Clone Sequence Records
BO16409.5prime Sequence
363 bp (363 high quality bases) assembled on 2006-10-13
> BO16409.5prime
GAAGTTATCAGTCGACATGGGCGTCCAGGCAAATTTAGATGATTTGAGTG
AGGAGGAGAAAATCTTCTATATGTTTAAGGCCCATGACAATGATAATAAC
AATGCACTGGACGGCCTCGAAATGATTCAGTCTGCCATGCATCATAACTA
TGACTATTTCAAAAACAACGAGCGGGATGCATACCTACAAAATGCCACCG
ATGAGCTGGAGCACTTTATAGAGGCAATTGATAAATTTCTGCTGATTGCC
GACGACAATAACGATGGCCTGCTGCATTACCCGGAATTCGTGAAGGCAAT
TACCGGTGGCAAGGAGCAGCCGAATGTGGACAGGAATATCCTGCGCCGCA
AGCTTTCTAGACC
BO16409.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-PB | 516 | CG12817-RB | 181..513 | 14..346 | 1665 | 100 | Plus |
CG12817-PA | 333 | CG12817-RA | 1..330 | 17..346 | 1650 | 100 | Plus |
CG12817-PC | 270 | CG12817-RC | 181..246 | 14..79 | 330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:55:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-RB | 1060 | CG12817-RB | 250..582 | 14..346 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:55:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10224151..10224294 | 221..78 | 720 | 100 | Minus |
3R | 32079331 | 3R | 10223918..10224048 | 346..216 | 640 | 99.2 | Minus |
3R | 32079331 | 3R | 10224350..10224416 | 80..14 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:55:06 has no hits.
BO16409.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:45 Download gff for
BO16409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-PB | 179..516 | 10..351 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 04:06:31 Download gff for
BO16409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 248..585 | 10..351 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:36:21 Download gff for
BO16409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 248..585 | 10..351 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:36:21 Download gff for
BO16409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10224351..10224418 | 10..79 | 97 | | Minus |
3R | 10223915..10224042 | 222..351 | 97 | <- | Minus |
3R | 10224151..10224292 | 80..221 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 04:06:31 Download gff for
BO16409.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6049637..6049764 | 222..351 | 97 | <- | Minus |
arm_3R | 6049873..6050014 | 80..221 | 100 | <- | Minus |
arm_3R | 6050073..6050140 | 10..79 | 97 | | Minus |
BO16409.3prime Sequence
363 bp (363 high quality bases) assembled on 2006-10-13
> BO16409.3prime
ATGGTCTAGAAAGCTTGCGGCGCAGGATATTCCTGTCCACATTCGGCTGC
TCCTTGCCACCGGTAATTGCCTTCACGAATTCCGGGTAATGCAGCAGGCC
ATCGTTATTGTCGTCGGCAATCAGCAGAAATTTATCAATTGCCTCTATAA
AGTGCTCCAGCTCATCGGTGGCATTTTGTAGGTATGCATCCCGCTCGTTG
TTTTTGAAATAGTCATAGTTATGATGCATGGCAGACTGAATCATTTCGAG
GCCGTCCAGTGCATTGTTATTATCATTGTCATGGGCCTTAAACATATAGA
AGATTTTCTCCTCCTCACTCAAATCATCTAAATTTGCCTGGACGCCCATG
TCGACTGATAACT
BO16409.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-PB | 516 | CG12817-RB | 181..513 | 352..20 | 1665 | 100 | Minus |
CG12817-PA | 333 | CG12817-RA | 1..330 | 349..20 | 1650 | 100 | Minus |
CG12817-PC | 270 | CG12817-RC | 181..246 | 352..287 | 330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:54:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-RB | 1060 | CG12817-RB | 250..582 | 352..20 | 1665 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:54:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10224151..10224294 | 145..288 | 720 | 100 | Plus |
3R | 32079331 | 3R | 10223918..10224048 | 20..150 | 640 | 99.2 | Plus |
3R | 32079331 | 3R | 10224350..10224416 | 286..352 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:54:32 has no hits.
BO16409.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:44 Download gff for
BO16409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-PB | 179..516 | 15..356 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:01:33 Download gff for
BO16409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 248..585 | 15..356 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:47 Download gff for
BO16409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 248..585 | 15..356 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:47 Download gff for
BO16409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10224151..10224292 | 145..286 | 100 | <- | Plus |
3R | 10224351..10224418 | 287..356 | 97 | | Plus |
3R | 10223915..10224042 | 15..144 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:01:33 Download gff for
BO16409.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6049637..6049764 | 15..144 | 97 | <- | Plus |
arm_3R | 6049873..6050014 | 145..286 | 100 | <- | Plus |
arm_3R | 6050073..6050140 | 287..356 | 97 | | Plus |
BO16409.complete Sequence
365 bp assembled on 2011-06-28
> BO16409.complete
GAAGTTATCAGTCGACATGGGCGTCCAGGCAAATTTAGATGATTTGAGTG
AGGAGGAGAAAATCTTCTATATGTTTAAGGCCCATGACAATGATAATAAC
AATGCACTGGACGGCCTCGAAATGATTCAGTCTGCCATGCATCATAACTA
TGACTATTTCAAAAACAACGAGCGGGATGCATACCTACAAAATGCCACCG
ATGAGCTGGAGCACTTTATAGAGGCAATTGATAAATTTCTGCTGATTGCC
GACGACAATAACGATGGCCTGCTGCATTACCCGGAATTCGTGAAGGCAAT
TACCGGTGGCAAGGAGCAGCCGAATGTGGACAGGAATATCCTGCGCCGCA
AGCTTTCTAGACCAT
BO16409.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-RB | 516 | CG12817-PB | 181..513 | 14..346 | 1665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-RB | 1060 | CG12817-RB | 250..582 | 14..346 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10224151..10224294 | 221..78 | 720 | 100 | Minus |
3R | 32079331 | 3R | 10223918..10224048 | 346..216 | 640 | 99.2 | Minus |
3R | 32079331 | 3R | 10224350..10224416 | 80..14 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:08:24 has no hits.
BO16409.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:11 Download gff for
BO16409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 238..567 | 17..349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:13 Download gff for
BO16409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 253..582 | 17..349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:07 Download gff for
BO16409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12817-RB | 253..582 | 17..349 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:07 Download gff for
BO16409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10224351..10224413 | 17..79 | 100 | | Minus |
3R | 10223915..10224042 | 222..349 | 97 | <- | Minus |
3R | 10224151..10224292 | 80..221 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:13 Download gff for
BO16409.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6049637..6049764 | 222..349 | 97 | <- | Minus |
arm_3R | 6049873..6050014 | 80..221 | 100 | <- | Minus |
arm_3R | 6050073..6050135 | 17..79 | 100 | | Minus |
BO16409.pep Sequence
Translation from 16 to 364
> BO16409.pep
MGVQANLDDLSEEEKIFYMFKAHDNDNNNALDGLEMIQSAMHHNYDYFKN
NERDAYLQNATDELEHFIEAIDKFLLIADDNNDGLLHYPEFVKAITGGKE
QPNVDRNILRRKLSRP
BO16409.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12817-PB | 171 | CG12817-PB | 62..171 | 1..110 | 584 | 100 | Plus |
CG17271-PA | 281 | CG17271-PA | 155..250 | 1..94 | 162 | 37.5 | Plus |