Clone BO16409 Report

Search the DGRC for BO16409

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:9
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO16409.pep: Imported from assembly
Sequenced Size:365

Clone Sequence Records

BO16409.5prime Sequence

363 bp (363 high quality bases) assembled on 2006-10-13

> BO16409.5prime
GAAGTTATCAGTCGACATGGGCGTCCAGGCAAATTTAGATGATTTGAGTG
AGGAGGAGAAAATCTTCTATATGTTTAAGGCCCATGACAATGATAATAAC
AATGCACTGGACGGCCTCGAAATGATTCAGTCTGCCATGCATCATAACTA
TGACTATTTCAAAAACAACGAGCGGGATGCATACCTACAAAATGCCACCG
ATGAGCTGGAGCACTTTATAGAGGCAATTGATAAATTTCTGCTGATTGCC
GACGACAATAACGATGGCCTGCTGCATTACCCGGAATTCGTGAAGGCAAT
TACCGGTGGCAAGGAGCAGCCGAATGTGGACAGGAATATCCTGCGCCGCA
AGCTTTCTAGACC

BO16409.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG12817-PB 516 CG12817-RB 181..513 14..346 1665 100 Plus
CG12817-PA 333 CG12817-RA 1..330 17..346 1650 100 Plus
CG12817-PC 270 CG12817-RC 181..246 14..79 330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:55:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12817-RB 1060 CG12817-RB 250..582 14..346 1665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10224151..10224294 221..78 720 100 Minus
3R 32079331 3R 10223918..10224048 346..216 640 99.2 Minus
3R 32079331 3R 10224350..10224416 80..14 335 100 Minus
Blast to na_te.dros performed on 2015-02-06 11:55:06 has no hits.

BO16409.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:45 Download gff for BO16409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12817-PB 179..516 10..351 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 04:06:31 Download gff for BO16409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12817-RB 248..585 10..351 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:36:21 Download gff for BO16409.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12817-RB 248..585 10..351 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:36:21 Download gff for BO16409.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10224351..10224418 10..79 97   Minus
3R 10223915..10224042 222..351 97 <- Minus
3R 10224151..10224292 80..221 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 04:06:31 Download gff for BO16409.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6049637..6049764 222..351 97 <- Minus
arm_3R 6049873..6050014 80..221 100 <- Minus
arm_3R 6050073..6050140 10..79 97   Minus

BO16409.3prime Sequence

363 bp (363 high quality bases) assembled on 2006-10-13

> BO16409.3prime
ATGGTCTAGAAAGCTTGCGGCGCAGGATATTCCTGTCCACATTCGGCTGC
TCCTTGCCACCGGTAATTGCCTTCACGAATTCCGGGTAATGCAGCAGGCC
ATCGTTATTGTCGTCGGCAATCAGCAGAAATTTATCAATTGCCTCTATAA
AGTGCTCCAGCTCATCGGTGGCATTTTGTAGGTATGCATCCCGCTCGTTG
TTTTTGAAATAGTCATAGTTATGATGCATGGCAGACTGAATCATTTCGAG
GCCGTCCAGTGCATTGTTATTATCATTGTCATGGGCCTTAAACATATAGA
AGATTTTCTCCTCCTCACTCAAATCATCTAAATTTGCCTGGACGCCCATG
TCGACTGATAACT

BO16409.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG12817-PB 516 CG12817-RB 181..513 352..20 1665 100 Minus
CG12817-PA 333 CG12817-RA 1..330 349..20 1650 100 Minus
CG12817-PC 270 CG12817-RC 181..246 352..287 330 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG12817-RB 1060 CG12817-RB 250..582 352..20 1665 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10224151..10224294 145..288 720 100 Plus
3R 32079331 3R 10223918..10224048 20..150 640 99.2 Plus
3R 32079331 3R 10224350..10224416 286..352 335 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:54:32 has no hits.

BO16409.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:44 Download gff for BO16409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12817-PB 179..516 15..356 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:01:33 Download gff for BO16409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12817-RB 248..585 15..356 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:47 Download gff for BO16409.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12817-RB 248..585 15..356 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:47 Download gff for BO16409.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10224151..10224292 145..286 100 <- Plus
3R 10224351..10224418 287..356 97   Plus
3R 10223915..10224042 15..144 97 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:01:33 Download gff for BO16409.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6049637..6049764 15..144 97 <- Plus
arm_3R 6049873..6050014 145..286 100 <- Plus
arm_3R 6050073..6050140 287..356 97   Plus

BO16409.complete Sequence

365 bp assembled on 2011-06-28

> BO16409.complete
GAAGTTATCAGTCGACATGGGCGTCCAGGCAAATTTAGATGATTTGAGTG
AGGAGGAGAAAATCTTCTATATGTTTAAGGCCCATGACAATGATAATAAC
AATGCACTGGACGGCCTCGAAATGATTCAGTCTGCCATGCATCATAACTA
TGACTATTTCAAAAACAACGAGCGGGATGCATACCTACAAAATGCCACCG
ATGAGCTGGAGCACTTTATAGAGGCAATTGATAAATTTCTGCTGATTGCC
GACGACAATAACGATGGCCTGCTGCATTACCCGGAATTCGTGAAGGCAAT
TACCGGTGGCAAGGAGCAGCCGAATGTGGACAGGAATATCCTGCGCCGCA
AGCTTTCTAGACCAT

BO16409.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12817-RB 516 CG12817-PB 181..513 14..346 1665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12817-RB 1060 CG12817-RB 250..582 14..346 1665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10224151..10224294 221..78 720 100 Minus
3R 32079331 3R 10223918..10224048 346..216 640 99.2 Minus
3R 32079331 3R 10224350..10224416 80..14 335 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:08:24 has no hits.

BO16409.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:11 Download gff for BO16409.complete
Subject Subject Range Query Range Percent Splice Strand
CG12817-RB 238..567 17..349 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:13 Download gff for BO16409.complete
Subject Subject Range Query Range Percent Splice Strand
CG12817-RB 253..582 17..349 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:07 Download gff for BO16409.complete
Subject Subject Range Query Range Percent Splice Strand
CG12817-RB 253..582 17..349 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:07 Download gff for BO16409.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10224351..10224413 17..79 100   Minus
3R 10223915..10224042 222..349 97 <- Minus
3R 10224151..10224292 80..221 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:13 Download gff for BO16409.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6049637..6049764 222..349 97 <- Minus
arm_3R 6049873..6050014 80..221 100 <- Minus
arm_3R 6050073..6050135 17..79 100   Minus

BO16409.pep Sequence

Translation from 16 to 364

> BO16409.pep
MGVQANLDDLSEEEKIFYMFKAHDNDNNNALDGLEMIQSAMHHNYDYFKN
NERDAYLQNATDELEHFIEAIDKFLLIADDNNDGLLHYPEFVKAITGGKE
QPNVDRNILRRKLSRP

BO16409.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12817-PB 171 CG12817-PB 62..171 1..110 584 100 Plus
CG17271-PA 281 CG17271-PA 155..250 1..94 162 37.5 Plus