Clone Sequence Records
BO16410.3prime Sequence
635 bp (462 high quality bases) assembled on 2006-10-13
> BO16410.3prime
ATGGTCTAGAAAGCTTGCCTTCTTTCCCAGTTCAGCAGAGCGCTGTGACG
ACTTTTCCACGGCGTTTATTAAAGTAGACCTGAGGTTCCCCTTTTCCAGT
TCATGAACGCCTACTATGGTGGCGCCACCGGGAGAACAGACTTCATCCCG
CAGCACCGCCGGATGTTTTCCAGTGAGCAGCACCGTTTTGGCCGCTCCCA
GAAGCGTCTGAGCCGCAAACTGAAGAGCCATCTGACGCGGAACGCCCTGT
TTGACGCCGCCATCGGCCAGTGCCTCTATGATGGTGTAAACAAATGCCGG
ACCGCATCCAGCTACCCCGGTAACGGCGTCGATCATGGACTCGGGCACCT
GTTGCGCCAGTCCCAGGGCGTTGAGCATTAGGTGAATCTTTTCCAAGTCG
TGATGCGAAACGCGTGCGTTGCCAGTGTAAACAGTGCAGCCCTCGCCCAC
CTGCATGGATGTATTGGGCATGGTGCGTATCACCTTCAGCTCCGAACTGC
CCATGAAGCTGAAGGCCTCCTCCAGCGTTTCGAGACTGGTACCCGCCAGA
ACCGACACCACCAGCTTGCTGGCATCCTTGGGCGACGGCACGTGCTTGTA
TTTAAGCTGGGCGGCACACGGCGTTAGCATGTGTG
BO16410.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6009-PA | 843 | P5cr-RA | 224..840 | 635..19 | 3060 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:37:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| P5cr-RA | 1168 | CG6009-RA | 462..1078 | 635..19 | 3070 | 99.8 | Minus |
| Prp18-RA | 1304 | CG6011-RA | 1203..1267 | 19..83 | 325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19029392..19029949 | 635..78 | 2775 | 99.8 | Minus |
| 3R | 32079331 | 3R | 19030005..19030069 | 83..19 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:37:04 has no hits.
BO16410.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:46 Download gff for
BO16410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6009-PA | 224..843 | 16..635 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 17:15:04 Download gff for
BO16410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5cr-RA | 456..1076 | 15..635 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:55:01 Download gff for
BO16410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5cr-RA | 462..1082 | 15..635 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:55:01 Download gff for
BO16410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19029392..19029947 | 80..635 | 99 | -> | Minus |
| 3R | 19030009..19030073 | 15..79 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 17:15:04 Download gff for
BO16410.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14855114..14855669 | 80..635 | 99 | -> | Minus |
| arm_3R | 14855731..14855795 | 15..79 | 96 | | Minus |
BO16410.5prime Sequence
611 bp (532 high quality bases) assembled on 2006-10-13
> BO16410.5prime
GAAGTTATCAGTCGACATGGCCAAGTTGGACGAAAAGATCGGCTTCATCG
GGGGCGGAAACATGGCCTACGCCATAGGATCCGGACTGGTGCGCTGTGGG
ATCGTGAAGGCTAGCCAGGTGCAGGTCTCCGGTCCCCACATTGAGAACCT
GCAACGGTGGCGGGATCTGGGAGCTGTGACCTGCGACGACAACTGCATGG
TCCTGGAGCACTCGGACATAGTTTTCATCTGCGTAAAGCCACACATGCTA
ACGCCGTGTGCCGCCCAGCTTAAATACAAGCACGTGCCGTCGGCCAAGGA
TGCCAGCAAGCTGGTGGTGTCGGTTCTGGCGGGTACCAGTCTCGAAACGC
TGGAGGAGGCCTTCAGCTTCATGGGCAGTTCGGAGCTGAAGGTGATACGC
ACCATGCCCAATACATCCATGCAGGTGGGCGAGGGCTGCACTGTTTACAC
TGGCAACGCACGCGTTTCGCATCACGACTTGGAAAAGATTCACCTAATGC
TCAACGCCCTGNGACTGGCGCAACAGGTGCCCGAGTCCATGATCGACGCC
GTTACCGGGGTAGCTGGATGCGGTCCGGCATTTGTTTACACCATCATAGA
GGCACTGGCCG
BO16410.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6009-PA | 843 | P5cr-RA | 1..595 | 17..611 | 2956 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| P5cr-RA | 1168 | CG6009-RA | 238..833 | 16..611 | 2969 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:44:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19029168..19029763 | 16..611 | 2969 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:44:16 has no hits.
BO16410.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:47 Download gff for
BO16410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6009-PA | 1..595 | 17..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 19:25:55 Download gff for
BO16410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5cr-RA | 232..827 | 16..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 19:43:47 Download gff for
BO16410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5cr-RA | 238..833 | 16..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 19:43:47 Download gff for
BO16410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19029168..19029763 | 16..611 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 19:25:55 Download gff for
BO16410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14854890..14855485 | 16..611 | 99 | | Plus |
BO16410.complete Sequence
874 bp assembled on 2007-10-17
GenBank Submission: FJ633818
> BO16410.complete
GAAGTTATCAGTCGACATGGCCAAGTTGGACGAAAAGATCGGCTTCATCG
GGGGCGGAAACATGGCCTACGCCATAGGATCCGGACTGGTGCGCTGTGGG
ATCGTGAAGGCTAGCCAGGTGCAGGTCTCCGGTCCCCACATTGAGAACCT
GCAACGGTGGCGGGATCTGGGAGCTGTGACCTGCGACGACAACTGCATGG
TCCTGGAGCACTCGGACATAGTTTTCATCTGCGTAAAGCCACACATGCTA
ACGCCGTGTGCCGCCCAGCTTAAATACAAGCACGTGCCGTCGGCCAAGGA
TGCCAGCAAGCTGGTGGTGTCGGTTCTGGCGGGTACCAGTCTCGAAACGC
TGGAGGAGGCCTTCAGCTTCATGGGCAGTTCGGAGCTGAAGGTGATACGC
ACCATGCCCAATACATCCATGCAGGTGGGCGAGGGCTGCACTGTTTACAC
TGGCAACGCACGCGTTTCGCATCACGACTTGGAAAAGATTCACCTAATGC
TCAACGCCCTGGGACTGGCGCAACAGGTGCCCGAGTCCATGATCGACGCC
GTTACCGGGGTAGCTGGATGCGGTCCGGCATTTGTTTACACCATCATAGA
GGCACTGGCCGATGGCGGCGTCAAACAGGGCGTTCCGCGTCAGATGGCTC
TTCAGTTTGCGGCTCAGACGCTTCTGGGAGCGGCCAAAACGGTGCTGCTC
ACTGGAAAACATCCGGCGGTGCTGCGGGATGAAGTCTGTTCTCCCGGTGG
CGCCACCATAGTAGGCGTTCATGAACTGGAAAAGGGGAACCTCAGGTCTA
CTTTAATAAACGCCGTGGAAAAGTCGTCACAGCGCTCTGCTGAACTGGGA
AAGAAGGCAAGCTTTCTAGACCAT
BO16410.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| P5cr-RA | 843 | CG6009-PA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| P5cr-RA | 1168 | CG6009-RA | 238..1078 | 16..856 | 4205 | 100 | Plus |
| Prp18-RA | 1304 | CG6011-RA | 1203..1267 | 856..792 | 325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:23:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19029168..19029949 | 16..797 | 3910 | 100 | Plus |
| 3R | 32079331 | 3R | 19030005..19030069 | 792..856 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:23:47 has no hits.
BO16410.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:08 Download gff for
BO16410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5cr-RA | 1..843 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:45 Download gff for
BO16410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5cr-RA | 232..1076 | 16..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:30 Download gff for
BO16410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5cr-RA | 233..1072 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:09 Download gff for
BO16410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5cr-RA | 233..1072 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:35 Download gff for
BO16410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| P5cr-RA | 239..1078 | 17..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:35 Download gff for
BO16410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19029169..19029947 | 17..795 | 100 | -> | Plus |
| 3R | 19030009..19030069 | 796..858 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:30 Download gff for
BO16410.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14854891..14855669 | 17..795 | 100 | -> | Plus |
| arm_3R | 14855731..14855791 | 796..858 | 96 | | Plus |
BO16410.pep Sequence
Translation from 16 to 874
> BO16410.pep
MAKLDEKIGFIGGGNMAYAIGSGLVRCGIVKASQVQVSGPHIENLQRWRD
LGAVTCDDNCMVLEHSDIVFICVKPHMLTPCAAQLKYKHVPSAKDASKLV
VSVLAGTSLETLEEAFSFMGSSELKVIRTMPNTSMQVGEGCTVYTGNARV
SHHDLEKIHLMLNALGLAQQVPESMIDAVTGVAGCGPAFVYTIIEALADG
GVKQGVPRQMALQFAAQTLLGAAKTVLLTGKHPAVLRDEVCSPGGATIVG
VHELEKGNLRSTLINAVEKSSQRSAELGKKASFLDH
BO16410.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| P5cr-PA | 280 | CG6009-PA | 1..280 | 1..280 | 1428 | 100 | Plus |
| P5cr-2-PA | 273 | CG5840-PA | 6..271 | 7..280 | 454 | 35.9 | Plus |
| P5cr-2-PD | 252 | CG5840-PD | 24..250 | 44..280 | 393 | 35.4 | Plus |
| P5cr-2-PC | 252 | CG5840-PC | 24..250 | 44..280 | 393 | 35.4 | Plus |
| P5cr-2-PB | 174 | CG5840-PB | 2..172 | 106..280 | 322 | 37.7 | Plus |
