Clone BO16413 Report

Search the DGRC for BO16413

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG12963-RB
Protein status:BO16413.pep: validated full length
Sequenced Size:514

Clone Sequence Records

BO16413.5prime Sequence

512 bp (512 high quality bases) assembled on 2006-10-13

> BO16413.5prime
GAAGTTATCAGTCGACATGAGTTTTATATGTTTAAAGACTTCACTATTCA
CTATTCACTACTCACTTATTTTTCTTAACCTATTTTCAGATCGTAATGTA
TTCAACGCACAGGAGGATCCTTCATCGAACCGCTATGGCGACATTTTCTT
CATCGAACCCGGCAGCGTGGAGGCCAACCGCATTCGCGATCAACTGGAAA
AGGATGAAAAGGATTTACCCAGCTACGACGAGGTGATGCGCATGTGTAAC
CTGACCACTCCCACAGCAGCAGCGGCTGGAATGCCTGTTCCCCAATCGCC
CCTCGGTGTACCCAGTCCCATTGGAATCGCGGCACTGCCGGCGCCACCGT
ATTCGGAGACAGATCCACATTCCTCGTCCGCCGCAGAAGCCACTGTCATC
GCAATGGAACCGATGGAGCCATCCACCTCCCGCGCGGCACAGATTCCACC
CAGCTCCGGATCTGGTCCTCCTGCTCCATTGCCAACGACAGCGGTGGCAA
GCTTTCTAGACC

BO16413.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG12963-PB 483 CG12963-RB 1..480 17..496 2400 100 Plus
CG12963-PA 573 CG12963-RA 162..570 88..496 2045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12963-RK 874 CG12963-RK 250..659 87..496 2050 100 Plus
CG12963-RG 971 CG12963-RG 347..756 87..496 2050 100 Plus
CG12963-RN 821 CG12963-RN 197..606 87..496 2050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15561742..15562221 17..496 2400 100 Plus
Blast to na_te.dros performed 2015-02-12 03:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3427..3468 203..162 111 73.8 Minus

BO16413.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:50 Download gff for BO16413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12963-PB 1..483 17..499 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:11 Download gff for BO16413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12963-RN 189..606 79..496 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:52 Download gff for BO16413.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12963-RN 189..606 79..496 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:52 Download gff for BO16413.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15561728..15562221 5..496 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:11 Download gff for BO16413.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11449233..11449726 5..496 99   Plus

BO16413.3prime Sequence

512 bp (512 high quality bases) assembled on 2006-10-13

> BO16413.3prime
ATGGTCTAGAAAGCTTGCCACCGCTGTCGTTGGCAATGGAGCAGGAGGAC
CAGATCCGGAGCTGGGTGGAATCTGTGCCGCGCGGGAGGTGGATGGCTCC
ATCGGTTCCATTGCGATGACAGTGGCTTCTGCGGCGGACGAGGAATGTGG
ATCTGTCTCCGAATACGGTGGCGCCGGCAGTGCCGCGATTCCAATGGGAC
TGGGTACACCGAGGGGCGATTGGGGAACAGGCATTCCAGCCGCTGCTGCT
GTGGGAGTGGTCAGGTTACACATGCGCATCACCTCGTCGTAGCTGGGTAA
ATCCTTTTCATCCTTTTCCAGTTGATCGCGAATGCGGTTGGCCTCCACGC
TGCCGGGTTCGATGAAGAAAATGTCGCCATAGCGGTTCGATGAAGGATCC
TCCTGTGCGTTGAATACATTACGATCTGAAAATAGGTTAAGAAAAATAAG
TGAGTAGTGAATAGTGAATAGTGAAGTCTTTAAACATATAAAACTCATGT
CGACTGATAACT

BO16413.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12963-PB 483 CG12963-RB 1..480 498..19 2400 100 Minus
CG12963-PA 573 CG12963-RA 162..570 427..19 2045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12963-RK 874 CG12963-RK 250..659 428..19 2050 100 Minus
CG12963-RG 971 CG12963-RG 347..756 428..19 2050 100 Minus
CG12963-RN 821 CG12963-RN 197..606 428..19 2050 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15561742..15562221 498..19 2400 100 Minus
Blast to na_te.dros performed 2015-02-03 06:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3427..3468 312..353 111 73.8 Plus

BO16413.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:49 Download gff for BO16413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12963-PB 1..483 16..498 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:39 Download gff for BO16413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12963-RN 189..606 19..436 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:17 Download gff for BO16413.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12963-RN 189..606 19..436 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:17 Download gff for BO16413.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15561728..15562221 19..510 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:39 Download gff for BO16413.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11449233..11449726 19..510 99   Minus

BO16413.complete Sequence

514 bp assembled on 2006-10-11

GenBank Submission: FJ633819

> BO16413.complete
GAAGTTATCAGTCGACATGAGTTTTATATGTTTAAAGACTTCACTATTCA
CTATTCACTACTCACTTATTTTTCTTAACCTATTTTCAGATCGTAATGTA
TTCAACGCACAGGAGGATCCTTCATCGAACCGCTATGGCGACATTTTCTT
CATCGAACCCGGCAGCGTGGAGGCCAACCGCATTCGCGATCAACTGGAAA
AGGATGAAAAGGATTTACCCAGCTACGACGAGGTGATGCGCATGTGTAAC
CTGACCACTCCCACAGCAGCAGCGGCTGGAATGCCTGTTCCCCAATCGCC
CCTCGGTGTACCCAGTCCCATTGGAATCGCGGCACTGCCGGCGCCACCGT
ATTCGGAGACAGATCCACATTCCTCGTCCGCCGCAGAAGCCACTGTCATC
GCAATGGAACCGATGGAGCCATCCACCTCCCGCGCGGCACAGATTCCACC
CAGCTCCGGATCTGGTCCTCCTGCTCCATTGCCAACGACAGCGGTGGCAA
GCTTTCTAGACCAT

BO16413.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG12963-RK 603 CG12963-PK 191..600 87..496 2050 100 Plus
CG12963-RG 642 CG12963-PG 230..639 87..496 2050 100 Plus
CG12963-RN 543 CG12963-PN 131..540 87..496 2050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12963-RK 874 CG12963-RK 250..659 87..496 2050 100 Plus
CG12963-RG 971 CG12963-RG 347..756 87..496 2050 100 Plus
CG12963-RN 821 CG12963-RN 197..606 87..496 2050 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15561742..15562221 17..496 2400 100 Plus
Blast to na_te.dros performed 2014-11-27 17:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3427..3468 203..162 111 73.8 Minus

BO16413.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:02 Download gff for BO16413.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RB 1..483 17..499 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:30 Download gff for BO16413.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RB 471..964 5..496 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:36 Download gff for BO16413.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RN 189..606 79..498 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:03 Download gff for BO16413.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RB 471..964 5..496 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:50 Download gff for BO16413.complete
Subject Subject Range Query Range Percent Splice Strand
CG12963-RN 189..606 79..498 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:50 Download gff for BO16413.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15561742..15562221 17..498 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:36 Download gff for BO16413.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11449247..11449726 17..498 99   Plus

BO16413.pep Sequence

Translation from 16 to 514

> BO16413.pep
MSFICLKTSLFTIHYSLIFLNLFSDRNVFNAQEDPSSNRYGDIFFIEPGS
VEANRIRDQLEKDEKDLPSYDEVMRMCNLTTPTAAAAGMPVPQSPLGVPS
PIGIAALPAPPYSETDPHSSSAAEATVIAMEPMEPSTSRAAQIPPSSGSG
PPAPLPTTAVASFLDH

BO16413.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG12963-PM 176 CG12963-PM 37..176 21..160 714 98.6 Plus
CG12963-PC 178 CG12963-PC 42..178 24..160 710 100 Plus
CG12963-PG 213 CG12963-PG 73..213 20..160 710 97.2 Plus
CG12963-PL 169 CG12963-PL 9..169 1..160 708 88.2 Plus
CG12963-PJ 179 CG12963-PJ 43..179 24..160 707 99.3 Plus