Clone Sequence Records
BO16413.5prime Sequence
512 bp (512 high quality bases) assembled on 2006-10-13
> BO16413.5prime
GAAGTTATCAGTCGACATGAGTTTTATATGTTTAAAGACTTCACTATTCA
CTATTCACTACTCACTTATTTTTCTTAACCTATTTTCAGATCGTAATGTA
TTCAACGCACAGGAGGATCCTTCATCGAACCGCTATGGCGACATTTTCTT
CATCGAACCCGGCAGCGTGGAGGCCAACCGCATTCGCGATCAACTGGAAA
AGGATGAAAAGGATTTACCCAGCTACGACGAGGTGATGCGCATGTGTAAC
CTGACCACTCCCACAGCAGCAGCGGCTGGAATGCCTGTTCCCCAATCGCC
CCTCGGTGTACCCAGTCCCATTGGAATCGCGGCACTGCCGGCGCCACCGT
ATTCGGAGACAGATCCACATTCCTCGTCCGCCGCAGAAGCCACTGTCATC
GCAATGGAACCGATGGAGCCATCCACCTCCCGCGCGGCACAGATTCCACC
CAGCTCCGGATCTGGTCCTCCTGCTCCATTGCCAACGACAGCGGTGGCAA
GCTTTCTAGACC
BO16413.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12963-PB | 483 | CG12963-RB | 1..480 | 17..496 | 2400 | 100 | Plus |
CG12963-PA | 573 | CG12963-RA | 162..570 | 88..496 | 2045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12963-RK | 874 | CG12963-RK | 250..659 | 87..496 | 2050 | 100 | Plus |
CG12963-RG | 971 | CG12963-RG | 347..756 | 87..496 | 2050 | 100 | Plus |
CG12963-RN | 821 | CG12963-RN | 197..606 | 87..496 | 2050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15561742..15562221 | 17..496 | 2400 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 03:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3427..3468 | 203..162 | 111 | 73.8 | Minus |
BO16413.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:50 Download gff for
BO16413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-PB | 1..483 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:11 Download gff for
BO16413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-RN | 189..606 | 79..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:52 Download gff for
BO16413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-RN | 189..606 | 79..496 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:52 Download gff for
BO16413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15561728..15562221 | 5..496 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:11 Download gff for
BO16413.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11449233..11449726 | 5..496 | 99 | | Plus |
BO16413.3prime Sequence
512 bp (512 high quality bases) assembled on 2006-10-13
> BO16413.3prime
ATGGTCTAGAAAGCTTGCCACCGCTGTCGTTGGCAATGGAGCAGGAGGAC
CAGATCCGGAGCTGGGTGGAATCTGTGCCGCGCGGGAGGTGGATGGCTCC
ATCGGTTCCATTGCGATGACAGTGGCTTCTGCGGCGGACGAGGAATGTGG
ATCTGTCTCCGAATACGGTGGCGCCGGCAGTGCCGCGATTCCAATGGGAC
TGGGTACACCGAGGGGCGATTGGGGAACAGGCATTCCAGCCGCTGCTGCT
GTGGGAGTGGTCAGGTTACACATGCGCATCACCTCGTCGTAGCTGGGTAA
ATCCTTTTCATCCTTTTCCAGTTGATCGCGAATGCGGTTGGCCTCCACGC
TGCCGGGTTCGATGAAGAAAATGTCGCCATAGCGGTTCGATGAAGGATCC
TCCTGTGCGTTGAATACATTACGATCTGAAAATAGGTTAAGAAAAATAAG
TGAGTAGTGAATAGTGAATAGTGAAGTCTTTAAACATATAAAACTCATGT
CGACTGATAACT
BO16413.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12963-PB | 483 | CG12963-RB | 1..480 | 498..19 | 2400 | 100 | Minus |
CG12963-PA | 573 | CG12963-RA | 162..570 | 427..19 | 2045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:32:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12963-RK | 874 | CG12963-RK | 250..659 | 428..19 | 2050 | 100 | Minus |
CG12963-RG | 971 | CG12963-RG | 347..756 | 428..19 | 2050 | 100 | Minus |
CG12963-RN | 821 | CG12963-RN | 197..606 | 428..19 | 2050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:32:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15561742..15562221 | 498..19 | 2400 | 100 | Minus |
Blast to na_te.dros performed 2015-02-03 06:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3427..3468 | 312..353 | 111 | 73.8 | Plus |
BO16413.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:49 Download gff for
BO16413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-PB | 1..483 | 16..498 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:39 Download gff for
BO16413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-RN | 189..606 | 19..436 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:17 Download gff for
BO16413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-RN | 189..606 | 19..436 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:17 Download gff for
BO16413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15561728..15562221 | 19..510 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:39 Download gff for
BO16413.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11449233..11449726 | 19..510 | 99 | | Minus |
BO16413.complete Sequence
514 bp assembled on 2006-10-11
GenBank Submission: FJ633819
> BO16413.complete
GAAGTTATCAGTCGACATGAGTTTTATATGTTTAAAGACTTCACTATTCA
CTATTCACTACTCACTTATTTTTCTTAACCTATTTTCAGATCGTAATGTA
TTCAACGCACAGGAGGATCCTTCATCGAACCGCTATGGCGACATTTTCTT
CATCGAACCCGGCAGCGTGGAGGCCAACCGCATTCGCGATCAACTGGAAA
AGGATGAAAAGGATTTACCCAGCTACGACGAGGTGATGCGCATGTGTAAC
CTGACCACTCCCACAGCAGCAGCGGCTGGAATGCCTGTTCCCCAATCGCC
CCTCGGTGTACCCAGTCCCATTGGAATCGCGGCACTGCCGGCGCCACCGT
ATTCGGAGACAGATCCACATTCCTCGTCCGCCGCAGAAGCCACTGTCATC
GCAATGGAACCGATGGAGCCATCCACCTCCCGCGCGGCACAGATTCCACC
CAGCTCCGGATCTGGTCCTCCTGCTCCATTGCCAACGACAGCGGTGGCAA
GCTTTCTAGACCAT
BO16413.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12963-RK | 603 | CG12963-PK | 191..600 | 87..496 | 2050 | 100 | Plus |
CG12963-RG | 642 | CG12963-PG | 230..639 | 87..496 | 2050 | 100 | Plus |
CG12963-RN | 543 | CG12963-PN | 131..540 | 87..496 | 2050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12963-RK | 874 | CG12963-RK | 250..659 | 87..496 | 2050 | 100 | Plus |
CG12963-RG | 971 | CG12963-RG | 347..756 | 87..496 | 2050 | 100 | Plus |
CG12963-RN | 821 | CG12963-RN | 197..606 | 87..496 | 2050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:02:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15561742..15562221 | 17..496 | 2400 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 17:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 3427..3468 | 203..162 | 111 | 73.8 | Minus |
BO16413.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:02 Download gff for
BO16413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-RB | 1..483 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:30 Download gff for
BO16413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-RB | 471..964 | 5..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:36 Download gff for
BO16413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-RN | 189..606 | 79..498 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:03 Download gff for
BO16413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-RB | 471..964 | 5..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:50 Download gff for
BO16413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12963-RN | 189..606 | 79..498 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:50 Download gff for
BO16413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15561742..15562221 | 17..498 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:36 Download gff for
BO16413.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11449247..11449726 | 17..498 | 99 | | Plus |
BO16413.pep Sequence
Translation from 16 to 514
> BO16413.pep
MSFICLKTSLFTIHYSLIFLNLFSDRNVFNAQEDPSSNRYGDIFFIEPGS
VEANRIRDQLEKDEKDLPSYDEVMRMCNLTTPTAAAAGMPVPQSPLGVPS
PIGIAALPAPPYSETDPHSSSAAEATVIAMEPMEPSTSRAAQIPPSSGSG
PPAPLPTTAVASFLDH
BO16413.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12963-PM | 176 | CG12963-PM | 37..176 | 21..160 | 714 | 98.6 | Plus |
CG12963-PC | 178 | CG12963-PC | 42..178 | 24..160 | 710 | 100 | Plus |
CG12963-PG | 213 | CG12963-PG | 73..213 | 20..160 | 710 | 97.2 | Plus |
CG12963-PL | 169 | CG12963-PL | 9..169 | 1..160 | 708 | 88.2 | Plus |
CG12963-PJ | 179 | CG12963-PJ | 43..179 | 24..160 | 707 | 99.3 | Plus |