Clone Sequence Records
BO16414.3prime Sequence
671 bp (530 high quality bases) assembled on 2006-10-13
> BO16414.3prime
ATGGTCTAGAAAGCTTGCGCATATTTCTGTGGAGTTTTTGCTTAAATCAC
AATCATCGACAAATTCAACGTGCGTGAAGGGAAAATGACCATTTTTTCCA
TTTAATTCTCCCTCCCATTGCCCATTAATGTTTGTTTTAGTGACTTTAAT
AATGTCACCTATTTCCAATTTTAATGCAGTCTTATCGTATGCGTTAGGGA
CCCTTGACTGTTTTACGCGGGCGTATGCAGGTAGTTTTCGATTTAAATCT
GTCCTTTTAAGAGTACTTTCAAATACATTGCTAGATCCCGAAATGGAAGG
TTCGTTTTTATCAATAGCATCTTCATCCATATAATCGTCATACTGTTGTA
TATAGGGAACCGGTATTTGACCAATTTTCCCCGAGGAGTTACGCGCAGTC
CACCATTGATCCTCGTCTTTTCGAACTATTGTTAAAACTTCACCTCTTTG
AAAAGGTAAATCATCTTGATCGCTGCCAACGAAATCGAACTTTCCTATTA
CTTTTTCCACCCTTCTACACGCAGGCCGTTTTAAAGGGGTTGTATCCAAA
TAATGAAGAGTGTAAAAAGTTAAGAGTTTCGGTAGATTGTCAAAAGACTG
ATCCCCAATGCGGTAAACGATTTGATCCTGTTGTTGAACTTTGTTAATGA
TGTAGTTGCTAACTTTTGTAT
BO16414.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1587-PC | 816 | Crk-RC | 161..813 | 671..19 | 3265 | 100 | Minus |
CG1587-PA | 816 | Crk-RA | 161..813 | 671..19 | 3265 | 100 | Minus |
CG1587-PB | 762 | Crk-RB | 151..759 | 627..19 | 3045 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crk-RE | 1173 | CG1587-RE | 368..1020 | 671..19 | 3265 | 100 | Minus |
Crk-RA | 1197 | CG1587-RA | 392..1044 | 671..19 | 3265 | 100 | Minus |
Crk-RC | 1122 | CG1587-RC | 317..969 | 671..19 | 3265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 212791..213012 | 240..19 | 1110 | 100 | Minus |
4 | 1348131 | 4 | 211595..211795 | 671..471 | 1005 | 100 | Minus |
4 | 1348131 | 4 | 211854..211982 | 471..343 | 645 | 100 | Minus |
4 | 1348131 | 4 | 212625..212729 | 345..241 | 525 | 100 | Minus |
4 | 1348131 | 4 | 215964..216052 | 671..583 | 400 | 96.6 | Minus |
4 | 1348131 | 4 | 216168..216226 | 471..413 | 280 | 98.3 | Minus |
4 | 1348131 | 4 | 216051..216111 | 533..473 | 275 | 96.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:49:09 has no hits.
BO16414.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:50 Download gff for
BO16414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1587-PA | 161..816 | 15..671 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:12 Download gff for
BO16414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RC | 317..972 | 15..671 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:08 Download gff for
BO16414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RC | 317..972 | 15..671 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:08 Download gff for
BO16414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 212791..213015 | 15..240 | 99 | | Minus |
4 | 211595..211794 | 472..671 | 100 | -> | Minus |
4 | 211854..211982 | 343..471 | 100 | -> | Minus |
4 | 212628..212729 | 241..342 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:12 Download gff for
BO16414.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 232221..232420 | 472..671 | 100 | -> | Minus |
arm_4 | 232480..232608 | 343..471 | 100 | -> | Minus |
arm_4 | 233254..233355 | 241..342 | 100 | -> | Minus |
arm_4 | 233417..233641 | 15..240 | 99 | | Minus |
BO16414.5prime Sequence
758 bp (585 high quality bases) assembled on 2006-10-13
> BO16414.5prime
GAAGTTATCAGTCGACATGGATACATTTGACGTTTCTGATAGGAACAGCT
GGTACTTTGGTCCCATGTCTAGACAGGATGCTACTGAAGTTTTGATGAAC
GAACGCGAGCGGGGAGTGTTTTTAGTCCGTGATAGTAACTCGATAGCAGG
GGATTATGTACTTTGTGTAAGAGAAGATACAAAAGTTAGCAACTACATCA
TTAACAAAGTTCAACAACAGGATCAAATCGTTTACCGCATTGGGGATCAG
TCTTTTGACAATCTACCGAAACTCTTAACTTTTTACACTCTTCATTATTT
GGATACAACCCCTTTAAAACGGCCTGCGTGTAGAAGGGTGGAAAAAGTAA
TAGGAAAGTTCGATTTCGTTGGCAGCGATCAAGATGATTTACCTTTTCAA
AGAGGTGAAGTTTTAACAATAGTTCGAAAAGACGAGGATCAATGGTGGAC
TGCGCGTAACTCCTCGGGGAAAATTGGTCAAATACCGGTTCCCTATATAC
AACAGTATGACGATTATATGGATGAAGATGCTATTGATAAAAACGAACCT
TCCATTTCGGGATCTAGCAATGTATTTGAAAGTACTCTTTAAAGGACAGA
TTTAAATCGAAAACTACCTGCATACGCCCGCGTAAAACAGTCAAGGGTCC
CTAACGCATACGATAAGACTGCATTAAAATTGGAATAGGTGACATTATTA
AGTCACTAAACAAACATTAATGGGCATGGGAGGGAGAATAAATGAAAAAA
TGGTCATT
BO16414.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1587-PC | 816 | Crk-RC | 1..669 | 17..685 | 3320 | 99.8 | Plus |
CG1587-PA | 816 | Crk-RA | 1..669 | 17..685 | 3320 | 99.8 | Plus |
CG1587-PB | 762 | Crk-RB | 151..615 | 221..685 | 2300 | 99.7 | Plus |
CG1587-PB | 762 | Crk-RB | 1..151 | 17..167 | 755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crk-RA | 1197 | CG1587-RA | 232..979 | 17..758 | 3575 | 99.1 | Plus |
Crk-RC | 1122 | CG1587-RC | 157..904 | 17..758 | 3575 | 99.1 | Plus |
Crk-RE | 1173 | CG1587-RE | 262..955 | 71..758 | 3305 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 211588..211795 | 170..377 | 1040 | 100 | Plus |
4 | 1348131 | 4 | 211854..211982 | 377..505 | 645 | 100 | Plus |
4 | 1348131 | 4 | 210556..210680 | 47..171 | 625 | 100 | Plus |
4 | 1348131 | 4 | 212625..212729 | 503..607 | 510 | 99 | Plus |
4 | 1348131 | 4 | 212791..212947 | 608..758 | 490 | 94.9 | Plus |
4 | 1348131 | 4 | 215957..216052 | 170..265 | 435 | 96.9 | Plus |
4 | 1348131 | 4 | 216168..216226 | 377..435 | 280 | 98.3 | Plus |
4 | 1348131 | 4 | 216051..216111 | 315..375 | 275 | 96.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:20:04 has no hits.
BO16414.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:51 Download gff for
BO16414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1587-PA | 1..748 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:34 Download gff for
BO16414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RC | 154..904 | 14..758 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:30 Download gff for
BO16414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RC | 154..904 | 14..758 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:30 Download gff for
BO16414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 212628..212729 | 506..607 | 99 | -> | Plus |
4 | 212791..212947 | 608..758 | 96 | | Plus |
4 | 210452..210486 | 14..48 | 97 | -> | Plus |
4 | 210558..210680 | 49..171 | 100 | -> | Plus |
4 | 211590..211794 | 172..376 | 100 | -> | Plus |
4 | 211854..211982 | 377..505 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:34 Download gff for
BO16414.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 231078..231112 | 14..48 | 97 | -> | Plus |
arm_4 | 231184..231306 | 49..171 | 100 | -> | Plus |
arm_4 | 232216..232420 | 172..376 | 100 | -> | Plus |
arm_4 | 232480..232608 | 377..505 | 100 | -> | Plus |
arm_4 | 233254..233355 | 506..607 | 99 | -> | Plus |
arm_4 | 233417..233573 | 608..758 | 96 | | Plus |
BO16414.complete Sequence
847 bp assembled on 2006-10-11
GenBank Submission: FJ633820
> BO16414.complete
GAAGTTATCAGTCGACATGGATACATTTGACGTTTCTGATAGGAACAGCT
GGTACTTTGGTCCCATGTCTAGACAGGATGCTACTGAAGTTTTGATGAAC
GAACGCGAGCGGGGAGTGTTTTTAGTCCGTGATAGTAACTCGATAGCAGG
GGATTATGTACTTTGTGTAAGAGAAGATACAAAAGTTAGCAACTACATCA
TTAACAAAGTTCAACAACAGGATCAAATCGTTTACCGCATTGGGGATCAG
TCTTTTGACAATCTACCGAAACTCTTAACTTTTTACACTCTTCATTATTT
GGATACAACCCCTTTAAAACGGCCTGCGTGTAGAAGGGTGGAAAAAGTAA
TAGGAAAGTTCGATTTCGTTGGCAGCGATCAAGATGATTTACCTTTTCAA
AGAGGTGAAGTTTTAACAATAGTTCGAAAAGACGAGGATCAATGGTGGAC
TGCGCGTAACTCCTCGGGGAAAATTGGTCAAATACCGGTTCCCTATATAC
AACAGTATGACGATTATATGGATGAAGATGCTATTGATAAAAACGAACCT
TCCATTTCGGGATCTAGCAATGTATTTGAAAGTACTCTTAAAAGGACAGA
TTTAAATCGAAAACTACCTGCATACGCCCGCGTAAAACAGTCAAGGGTCC
CTAACGCATACGATAAGACTGCATTAAAATTGGAAATAGGTGACATTATT
AAAGTCACTAAAACAAACATTAATGGGCAATGGGAGGGAGAATTAAATGG
AAAAAATGGTCATTTTCCCTTCACGCACGTTGAATTTGTCGATGATTGTG
ATTTAAGCAAAAACTCCACAGAAATATGCGCAAGCTTTCTAGACCAT
BO16414.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crk-RA | 816 | CG1587-PA | 1..813 | 17..829 | 4065 | 100 | Plus |
Crk-RC | 816 | CG1587-PC | 1..813 | 17..829 | 4065 | 100 | Plus |
Crk-RE | 792 | CG1587-PE | 31..789 | 71..829 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crk-RA | 1197 | CG1587-RA | 232..1044 | 17..829 | 4065 | 100 | Plus |
Crk-RC | 1122 | CG1587-RC | 157..969 | 17..829 | 4065 | 100 | Plus |
Crk-RE | 1173 | CG1587-RE | 262..1020 | 71..829 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 212791..213012 | 608..829 | 1110 | 100 | Plus |
4 | 1348131 | 4 | 211588..211795 | 170..377 | 1040 | 100 | Plus |
4 | 1348131 | 4 | 211854..211982 | 377..505 | 645 | 100 | Plus |
4 | 1348131 | 4 | 210556..210680 | 47..171 | 625 | 100 | Plus |
4 | 1348131 | 4 | 212625..212729 | 503..607 | 525 | 100 | Plus |
4 | 1348131 | 4 | 215957..216052 | 170..265 | 435 | 96.9 | Plus |
4 | 1348131 | 4 | 216168..216226 | 377..435 | 280 | 98.3 | Plus |
4 | 1348131 | 4 | 216051..216111 | 315..375 | 275 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:17:36 has no hits.
BO16414.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:04 Download gff for
BO16414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RA | 1..816 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:31 Download gff for
BO16414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RA | 158..976 | 14..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:17 Download gff for
BO16414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RC | 157..969 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:04 Download gff for
BO16414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RA | 158..976 | 14..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:05 Download gff for
BO16414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Crk-RC | 157..969 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:05 Download gff for
BO16414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 210455..210486 | 17..48 | 100 | -> | Plus |
4 | 210558..210680 | 49..171 | 100 | -> | Plus |
4 | 211590..211794 | 172..376 | 100 | -> | Plus |
4 | 211854..211982 | 377..505 | 100 | -> | Plus |
4 | 212628..212729 | 506..607 | 100 | -> | Plus |
4 | 212791..213012 | 608..831 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:17 Download gff for
BO16414.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 231081..231112 | 17..48 | 100 | -> | Plus |
arm_4 | 231184..231306 | 49..171 | 100 | -> | Plus |
arm_4 | 232216..232420 | 172..376 | 100 | -> | Plus |
arm_4 | 232480..232608 | 377..505 | 100 | -> | Plus |
arm_4 | 233254..233355 | 506..607 | 100 | -> | Plus |
arm_4 | 233417..233638 | 608..831 | 99 | | Plus |
BO16414.pep Sequence
Translation from 16 to 847
> BO16414.pep
MDTFDVSDRNSWYFGPMSRQDATEVLMNERERGVFLVRDSNSIAGDYVLC
VREDTKVSNYIINKVQQQDQIVYRIGDQSFDNLPKLLTFYTLHYLDTTPL
KRPACRRVEKVIGKFDFVGSDQDDLPFQRGEVLTIVRKDEDQWWTARNSS
GKIGQIPVPYIQQYDDYMDEDAIDKNEPSISGSSNVFESTLKRTDLNRKL
PAYARVKQSRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKNGHF
PFTHVEFVDDCDLSKNSTEICASFLDH
BO16414.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Crk-PA | 271 | CG1587-PA | 1..271 | 1..271 | 1436 | 100 | Plus |
Crk-PC | 271 | CG1587-PC | 1..271 | 1..271 | 1436 | 100 | Plus |
Crk-PE | 263 | CG1587-PE | 1..263 | 1..271 | 1367 | 97 | Plus |
Crk-PB | 253 | CG1587-PB | 1..253 | 1..271 | 1318 | 93.4 | Plus |
Crk-PD | 184 | CG1587-PD | 1..168 | 1..168 | 864 | 97 | Plus |