Clone BO16414 Report

Search the DGRC for BO16414

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCrk-RA
Protein status:BO16414.pep: validated full length
Sequenced Size:847

Clone Sequence Records

BO16414.3prime Sequence

671 bp (530 high quality bases) assembled on 2006-10-13

> BO16414.3prime
ATGGTCTAGAAAGCTTGCGCATATTTCTGTGGAGTTTTTGCTTAAATCAC
AATCATCGACAAATTCAACGTGCGTGAAGGGAAAATGACCATTTTTTCCA
TTTAATTCTCCCTCCCATTGCCCATTAATGTTTGTTTTAGTGACTTTAAT
AATGTCACCTATTTCCAATTTTAATGCAGTCTTATCGTATGCGTTAGGGA
CCCTTGACTGTTTTACGCGGGCGTATGCAGGTAGTTTTCGATTTAAATCT
GTCCTTTTAAGAGTACTTTCAAATACATTGCTAGATCCCGAAATGGAAGG
TTCGTTTTTATCAATAGCATCTTCATCCATATAATCGTCATACTGTTGTA
TATAGGGAACCGGTATTTGACCAATTTTCCCCGAGGAGTTACGCGCAGTC
CACCATTGATCCTCGTCTTTTCGAACTATTGTTAAAACTTCACCTCTTTG
AAAAGGTAAATCATCTTGATCGCTGCCAACGAAATCGAACTTTCCTATTA
CTTTTTCCACCCTTCTACACGCAGGCCGTTTTAAAGGGGTTGTATCCAAA
TAATGAAGAGTGTAAAAAGTTAAGAGTTTCGGTAGATTGTCAAAAGACTG
ATCCCCAATGCGGTAAACGATTTGATCCTGTTGTTGAACTTTGTTAATGA
TGTAGTTGCTAACTTTTGTAT

BO16414.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG1587-PC 816 Crk-RC 161..813 671..19 3265 100 Minus
CG1587-PA 816 Crk-RA 161..813 671..19 3265 100 Minus
CG1587-PB 762 Crk-RB 151..759 627..19 3045 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
Crk-RE 1173 CG1587-RE 368..1020 671..19 3265 100 Minus
Crk-RA 1197 CG1587-RA 392..1044 671..19 3265 100 Minus
Crk-RC 1122 CG1587-RC 317..969 671..19 3265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 212791..213012 240..19 1110 100 Minus
4 1348131 4 211595..211795 671..471 1005 100 Minus
4 1348131 4 211854..211982 471..343 645 100 Minus
4 1348131 4 212625..212729 345..241 525 100 Minus
4 1348131 4 215964..216052 671..583 400 96.6 Minus
4 1348131 4 216168..216226 471..413 280 98.3 Minus
4 1348131 4 216051..216111 533..473 275 96.7 Minus
Blast to na_te.dros performed on 2015-02-12 03:49:09 has no hits.

BO16414.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:50 Download gff for BO16414.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1587-PA 161..816 15..671 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:30:12 Download gff for BO16414.3prime
Subject Subject Range Query Range Percent Splice Strand
Crk-RC 317..972 15..671 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:08 Download gff for BO16414.3prime
Subject Subject Range Query Range Percent Splice Strand
Crk-RC 317..972 15..671 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:08 Download gff for BO16414.3prime
Subject Subject Range Query Range Percent Splice Strand
4 212791..213015 15..240 99   Minus
4 211595..211794 472..671 100 -> Minus
4 211854..211982 343..471 100 -> Minus
4 212628..212729 241..342 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:30:12 Download gff for BO16414.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 232221..232420 472..671 100 -> Minus
arm_4 232480..232608 343..471 100 -> Minus
arm_4 233254..233355 241..342 100 -> Minus
arm_4 233417..233641 15..240 99   Minus

BO16414.5prime Sequence

758 bp (585 high quality bases) assembled on 2006-10-13

> BO16414.5prime
GAAGTTATCAGTCGACATGGATACATTTGACGTTTCTGATAGGAACAGCT
GGTACTTTGGTCCCATGTCTAGACAGGATGCTACTGAAGTTTTGATGAAC
GAACGCGAGCGGGGAGTGTTTTTAGTCCGTGATAGTAACTCGATAGCAGG
GGATTATGTACTTTGTGTAAGAGAAGATACAAAAGTTAGCAACTACATCA
TTAACAAAGTTCAACAACAGGATCAAATCGTTTACCGCATTGGGGATCAG
TCTTTTGACAATCTACCGAAACTCTTAACTTTTTACACTCTTCATTATTT
GGATACAACCCCTTTAAAACGGCCTGCGTGTAGAAGGGTGGAAAAAGTAA
TAGGAAAGTTCGATTTCGTTGGCAGCGATCAAGATGATTTACCTTTTCAA
AGAGGTGAAGTTTTAACAATAGTTCGAAAAGACGAGGATCAATGGTGGAC
TGCGCGTAACTCCTCGGGGAAAATTGGTCAAATACCGGTTCCCTATATAC
AACAGTATGACGATTATATGGATGAAGATGCTATTGATAAAAACGAACCT
TCCATTTCGGGATCTAGCAATGTATTTGAAAGTACTCTTTAAAGGACAGA
TTTAAATCGAAAACTACCTGCATACGCCCGCGTAAAACAGTCAAGGGTCC
CTAACGCATACGATAAGACTGCATTAAAATTGGAATAGGTGACATTATTA
AGTCACTAAACAAACATTAATGGGCATGGGAGGGAGAATAAATGAAAAAA
TGGTCATT

BO16414.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG1587-PC 816 Crk-RC 1..669 17..685 3320 99.8 Plus
CG1587-PA 816 Crk-RA 1..669 17..685 3320 99.8 Plus
CG1587-PB 762 Crk-RB 151..615 221..685 2300 99.7 Plus
CG1587-PB 762 Crk-RB 1..151 17..167 755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
Crk-RA 1197 CG1587-RA 232..979 17..758 3575 99.1 Plus
Crk-RC 1122 CG1587-RC 157..904 17..758 3575 99.1 Plus
Crk-RE 1173 CG1587-RE 262..955 71..758 3305 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 211588..211795 170..377 1040 100 Plus
4 1348131 4 211854..211982 377..505 645 100 Plus
4 1348131 4 210556..210680 47..171 625 100 Plus
4 1348131 4 212625..212729 503..607 510 99 Plus
4 1348131 4 212791..212947 608..758 490 94.9 Plus
4 1348131 4 215957..216052 170..265 435 96.9 Plus
4 1348131 4 216168..216226 377..435 280 98.3 Plus
4 1348131 4 216051..216111 315..375 275 96.7 Plus
Blast to na_te.dros performed on 2015-02-10 17:20:04 has no hits.

BO16414.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:51 Download gff for BO16414.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1587-PA 1..748 17..758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:34 Download gff for BO16414.5prime
Subject Subject Range Query Range Percent Splice Strand
Crk-RC 154..904 14..758 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:30 Download gff for BO16414.5prime
Subject Subject Range Query Range Percent Splice Strand
Crk-RC 154..904 14..758 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:30 Download gff for BO16414.5prime
Subject Subject Range Query Range Percent Splice Strand
4 212628..212729 506..607 99 -> Plus
4 212791..212947 608..758 96   Plus
4 210452..210486 14..48 97 -> Plus
4 210558..210680 49..171 100 -> Plus
4 211590..211794 172..376 100 -> Plus
4 211854..211982 377..505 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:34 Download gff for BO16414.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 231078..231112 14..48 97 -> Plus
arm_4 231184..231306 49..171 100 -> Plus
arm_4 232216..232420 172..376 100 -> Plus
arm_4 232480..232608 377..505 100 -> Plus
arm_4 233254..233355 506..607 99 -> Plus
arm_4 233417..233573 608..758 96   Plus

BO16414.complete Sequence

847 bp assembled on 2006-10-11

GenBank Submission: FJ633820

> BO16414.complete
GAAGTTATCAGTCGACATGGATACATTTGACGTTTCTGATAGGAACAGCT
GGTACTTTGGTCCCATGTCTAGACAGGATGCTACTGAAGTTTTGATGAAC
GAACGCGAGCGGGGAGTGTTTTTAGTCCGTGATAGTAACTCGATAGCAGG
GGATTATGTACTTTGTGTAAGAGAAGATACAAAAGTTAGCAACTACATCA
TTAACAAAGTTCAACAACAGGATCAAATCGTTTACCGCATTGGGGATCAG
TCTTTTGACAATCTACCGAAACTCTTAACTTTTTACACTCTTCATTATTT
GGATACAACCCCTTTAAAACGGCCTGCGTGTAGAAGGGTGGAAAAAGTAA
TAGGAAAGTTCGATTTCGTTGGCAGCGATCAAGATGATTTACCTTTTCAA
AGAGGTGAAGTTTTAACAATAGTTCGAAAAGACGAGGATCAATGGTGGAC
TGCGCGTAACTCCTCGGGGAAAATTGGTCAAATACCGGTTCCCTATATAC
AACAGTATGACGATTATATGGATGAAGATGCTATTGATAAAAACGAACCT
TCCATTTCGGGATCTAGCAATGTATTTGAAAGTACTCTTAAAAGGACAGA
TTTAAATCGAAAACTACCTGCATACGCCCGCGTAAAACAGTCAAGGGTCC
CTAACGCATACGATAAGACTGCATTAAAATTGGAAATAGGTGACATTATT
AAAGTCACTAAAACAAACATTAATGGGCAATGGGAGGGAGAATTAAATGG
AAAAAATGGTCATTTTCCCTTCACGCACGTTGAATTTGTCGATGATTGTG
ATTTAAGCAAAAACTCCACAGAAATATGCGCAAGCTTTCTAGACCAT

BO16414.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:17:37
Subject Length Description Subject Range Query Range Score Percent Strand
Crk-RA 816 CG1587-PA 1..813 17..829 4065 100 Plus
Crk-RC 816 CG1587-PC 1..813 17..829 4065 100 Plus
Crk-RE 792 CG1587-PE 31..789 71..829 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
Crk-RA 1197 CG1587-RA 232..1044 17..829 4065 100 Plus
Crk-RC 1122 CG1587-RC 157..969 17..829 4065 100 Plus
Crk-RE 1173 CG1587-RE 262..1020 71..829 3795 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 212791..213012 608..829 1110 100 Plus
4 1348131 4 211588..211795 170..377 1040 100 Plus
4 1348131 4 211854..211982 377..505 645 100 Plus
4 1348131 4 210556..210680 47..171 625 100 Plus
4 1348131 4 212625..212729 503..607 525 100 Plus
4 1348131 4 215957..216052 170..265 435 96.9 Plus
4 1348131 4 216168..216226 377..435 280 98.3 Plus
4 1348131 4 216051..216111 315..375 275 96.7 Plus
Blast to na_te.dros performed on 2014-11-28 01:17:36 has no hits.

BO16414.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:04 Download gff for BO16414.complete
Subject Subject Range Query Range Percent Splice Strand
Crk-RA 1..816 17..833 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:31 Download gff for BO16414.complete
Subject Subject Range Query Range Percent Splice Strand
Crk-RA 158..976 14..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:45:17 Download gff for BO16414.complete
Subject Subject Range Query Range Percent Splice Strand
Crk-RC 157..969 17..831 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:04 Download gff for BO16414.complete
Subject Subject Range Query Range Percent Splice Strand
Crk-RA 158..976 14..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:05 Download gff for BO16414.complete
Subject Subject Range Query Range Percent Splice Strand
Crk-RC 157..969 17..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:05 Download gff for BO16414.complete
Subject Subject Range Query Range Percent Splice Strand
4 210455..210486 17..48 100 -> Plus
4 210558..210680 49..171 100 -> Plus
4 211590..211794 172..376 100 -> Plus
4 211854..211982 377..505 100 -> Plus
4 212628..212729 506..607 100 -> Plus
4 212791..213012 608..831 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:45:17 Download gff for BO16414.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 231081..231112 17..48 100 -> Plus
arm_4 231184..231306 49..171 100 -> Plus
arm_4 232216..232420 172..376 100 -> Plus
arm_4 232480..232608 377..505 100 -> Plus
arm_4 233254..233355 506..607 100 -> Plus
arm_4 233417..233638 608..831 99   Plus

BO16414.pep Sequence

Translation from 16 to 847

> BO16414.pep
MDTFDVSDRNSWYFGPMSRQDATEVLMNERERGVFLVRDSNSIAGDYVLC
VREDTKVSNYIINKVQQQDQIVYRIGDQSFDNLPKLLTFYTLHYLDTTPL
KRPACRRVEKVIGKFDFVGSDQDDLPFQRGEVLTIVRKDEDQWWTARNSS
GKIGQIPVPYIQQYDDYMDEDAIDKNEPSISGSSNVFESTLKRTDLNRKL
PAYARVKQSRVPNAYDKTALKLEIGDIIKVTKTNINGQWEGELNGKNGHF
PFTHVEFVDDCDLSKNSTEICASFLDH

BO16414.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Crk-PA 271 CG1587-PA 1..271 1..271 1436 100 Plus
Crk-PC 271 CG1587-PC 1..271 1..271 1436 100 Plus
Crk-PE 263 CG1587-PE 1..263 1..271 1367 97 Plus
Crk-PB 253 CG1587-PB 1..253 1..271 1318 93.4 Plus
Crk-PD 184 CG1587-PD 1..168 1..168 864 97 Plus