Clone BO16416 Report

Search the DGRC for BO16416

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG3091-RA
Protein status:BO16416.pep: validated full length
Sequenced Size:943

Clone Sequence Records

BO16416.3prime Sequence

778 bp (713 high quality bases) assembled on 2006-10-13

> BO16416.3prime
ATGGTCTAGAAAGCTTGCGAACCAGGACCACCGACTCTTGCTCTGAGCGG
CCACCTTCCAGTACCGCTCGTCGCTGAGATAAGCCGCGTTGTCCCTGATG
GACTGAATGCCTTTCGCCTTGAGTTCCGCTACAGTGCCCGCCTTGCCGCC
GTACTCGTTCGGCAACATGTCCCTGGGCACTTCTTTGTAAAGGCTATCCA
TACCCTCTGTGTGGTACCGGATCATGTTGCGGACTTCCTCCCTTAGGAAG
GGCGACATCATGGATATGAGCTTGTCCAGGTAAGTGGGGCAGTTGATGAC
ATGCATGGCCTGGAGTCGCGAGGGATAGGCTTCCTGCAGGAACTTCATGT
AAACACGCAGCACGAATATGGACACGTAGGCCAGGTGGCGTAGGGTGTAG
CCCCCAATGTCCACAATCTGAACATCGCCCTCGGCAATGTCCGCTTCGTC
TAGTACGTAATCAGCTCCGCTTCCTGTTTCTCGCTCTACATCCGGCTTTG
TGAATCGTGCATCACTCATCATGACAAAGATTTTGGTCTCCTCGACAGAA
TTCCGCGTTCGTGGATCCAGATCGGCCATGCGGAAGAAGATGAGCTTATT
TCCCTGGGGAGTGACTCCGGGTAATATCAAAAGGTCCGAAACCCTCAGGC
CCTCGGCGGTCATCTCGTCCTCCATGTTGCGATCCATGAACAGATGTGGG
CTCTTATTGCGCATACAATAATTTAGCTCCGCCAGGGCCTTGGTGCGTTC
CACATCAAAAGCCGTGCACTTGAGGAAT

BO16416.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3091-PA 912 CG3091-RA 150..909 778..19 3800 100 Minus
CG3091-PB 408 CG3091-RB 150..372 778..556 1115 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG3091-RC 1286 CG3091-RC 260..1019 778..19 3800 100 Minus
CG3091-RA 1219 CG3091-RA 193..952 778..19 3800 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2252916..2253249 223..556 1670 100 Plus
X 23542271 X 2253450..2253591 637..778 710 100 Plus
X 23542271 X 2252723..2252861 85..223 695 100 Plus
X 23542271 X 2253317..2253398 556..637 410 100 Plus
X 23542271 X 2252599..2252665 19..85 335 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:20:59 has no hits.

BO16416.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:54 Download gff for BO16416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3091-PA 150..912 16..778 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:36 Download gff for BO16416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 193..952 19..778 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:37 Download gff for BO16416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 193..952 19..778 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:37 Download gff for BO16416.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2253451..2253591 638..778 100   Plus
X 2252916..2253248 223..555 100 <- Plus
X 2252599..2252665 19..85 100 <- Plus
X 2252724..2252860 86..222 100 <- Plus
X 2253317..2253398 556..637 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:36 Download gff for BO16416.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2146632..2146698 19..85 100 <- Plus
arm_X 2146757..2146893 86..222 100 <- Plus
arm_X 2146949..2147281 223..555 100 <- Plus
arm_X 2147350..2147431 556..637 100 <- Plus
arm_X 2147484..2147624 638..778 100   Plus

BO16416.5prime Sequence

751 bp (749 high quality bases) assembled on 2006-10-13

> BO16416.5prime
GAAGTTATCAGTCGACATGGATAAAGATACAGGGGATAAGGACTCCGCCC
CCGAGACCAGCGCTTCGCCAGCAACTGGATGGAGCGACAAGCTGACGGAT
CTGGTCGCCTGGTTCGAGGCCAATCCCAATCTGCCCGAGAAGATCGAACC
AATAGTTATGCTACGATTCCTCAAGTGCACGGCTTTTGATGTGGAACGCA
CCAAGGCCCTGGCGGAGCTAAATTATTGTATGCGCAATAAGAGCCCACAT
CTGTTCATGGATCGCAACATGGAGGACGAGATGACCGCCGAGGGCCTGAG
GGTTTCGGACCTTTTGATATTACCCGGAGTCACTCCCCAGGGAAATAAGC
TCATCTTCTTCCGCATGGCCGATCTGGATCCACGAACGCGGAATTCTGTC
GAGGAGACCAAAATCTTTGTCATGATGAGTGATGCACGATTCACAAAGCC
GGATGTAGAGCGAGAAACAGGAAGCGGAGCTGATTACGTACTAGACGAAG
CGGACATTGCCGAGGGCGATGTTCAGATTGTGGACATTGGGGGCTACACC
CTACGCCACCTGGCCTACGTGTCCATATTCGTGCTGCGTGTTTACATGAA
GTTCCTGCAGGAAGCCTATCCCTCGCGACTCCAGGCCATGCATGTCATCA
ACTGCCCCACTTACCTGGACAAGCTCATATCCATGATGTCGCCCTTCCTA
AGGGAGGAAGTCCGCAACATGATCCGGTACCACACAGAGGGTATGGATAG
C

BO16416.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3091-PA 912 CG3091-RA 1..735 17..751 3675 100 Plus
CG3091-PB 408 CG3091-RB 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3091-RC 1286 CG3091-RC 111..845 17..751 3675 100 Plus
CG3091-RA 1219 CG3091-RA 44..778 17..751 3675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2252916..2253249 721..388 1670 100 Minus
X 23542271 X 2253450..2253615 307..142 815 99.4 Minus
X 23542271 X 2253958..2254087 146..17 650 100 Minus
X 23542271 X 2253317..2253398 388..307 410 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:05:02 has no hits.

BO16416.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:55 Download gff for BO16416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3091-PA 1..735 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:35 Download gff for BO16416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 39..778 9..751 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:17 Download gff for BO16416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 39..778 9..751 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:17 Download gff for BO16416.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2253451..2253610 147..306 100 <- Minus
X 2253958..2254092 9..146 97   Minus
X 2252831..2252860 722..751 100 <- Minus
X 2252916..2253248 389..721 100 <- Minus
X 2253317..2253398 307..388 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:35 Download gff for BO16416.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2146864..2146893 722..751 100 <- Minus
arm_X 2146949..2147281 389..721 100 <- Minus
arm_X 2147350..2147431 307..388 100 <- Minus
arm_X 2147484..2147643 147..306 100 <- Minus
arm_X 2147991..2148125 9..146 97   Minus

BO16416.complete Sequence

943 bp assembled on 2006-10-11

GenBank Submission: FJ633821

> BO16416.complete
GAAGTTATCAGTCGACATGGATAAAGATACAGGGGATAAGGACTCCGCCC
CCGAGACCAGCGCTTCGCCAGCAACTGGATGGAGCGACAAGCTGACGGAT
CTGGTCGCCTGGTTCGAGGCCAATCCCAATCTGCCCGAGAAGATCGAACC
AATAGTTATGCTACGATTCCTCAAGTGCACGGCTTTTGATGTGGAACGCA
CCAAGGCCCTGGCGGAGCTAAATTATTGTATGCGCAATAAGAGCCCACAT
CTGTTCATGGATCGCAACATGGAGGACGAGATGACCGCCGAGGGCCTGAG
GGTTTCGGACCTTTTGATATTACCCGGAGTCACTCCCCAGGGAAATAAGC
TCATCTTCTTCCGCATGGCCGATCTGGATCCACGAACGCGGAATTCTGTC
GAGGAGACCAAAATCTTTGTCATGATGAGTGATGCACGATTCACAAAGCC
GGATGTAGAGCGAGAAACAGGAAGCGGAGCTGATTACGTACTAGACGAAG
CGGACATTGCCGAGGGCGATGTTCAGATTGTGGACATTGGGGGCTACACC
CTACGCCACCTGGCCTACGTGTCCATATTCGTGCTGCGTGTTTACATGAA
GTTCCTGCAGGAAGCCTATCCCTCGCGACTCCAGGCCATGCATGTCATCA
ACTGCCCCACTTACCTGGACAAGCTCATATCCATGATGTCGCCCTTCCTA
AGGGAGGAAGTCCGCAACATGATCCGGTACCACACAGAGGGTATGGATAG
CCTTTACAAAGAAGTGCCCAGGGACATGTTGCCGAACGAGTACGGCGGCA
AGGCGGGCACTGTAGCGGAACTCAAGGCGAAAGGCATTCAGTCCATCAGG
GACAACGCGGCTTATCTCAGCGACGAGCGGTACTGGAAGGTGGCCGCTCA
GAGCAAGAGTCGGTGGTCCTGGTTCGCAAGCTTTCTAGACCAT

BO16416.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG3091-RC 912 CG3091-PC 1..909 17..925 4545 100 Plus
CG3091-RA 912 CG3091-PA 1..909 17..925 4545 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3091-RC 1286 CG3091-RC 111..1019 17..925 4545 100 Plus
CG3091-RA 1219 CG3091-RA 44..952 17..925 4545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2252916..2253249 721..388 1670 100 Minus
X 23542271 X 2253450..2253615 307..142 815 99.4 Minus
X 23542271 X 2252723..2252861 859..721 695 100 Minus
X 23542271 X 2253958..2254087 146..17 650 100 Minus
X 23542271 X 2253317..2253398 388..307 410 100 Minus
X 23542271 X 2252599..2252665 925..859 335 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:25:04 has no hits.

BO16416.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:06 Download gff for BO16416.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 1..912 17..928 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:33 Download gff for BO16416.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 39..952 9..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:28 Download gff for BO16416.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 44..952 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:06 Download gff for BO16416.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 39..952 9..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:34 Download gff for BO16416.complete
Subject Subject Range Query Range Percent Splice Strand
CG3091-RA 44..952 17..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:34 Download gff for BO16416.complete
Subject Subject Range Query Range Percent Splice Strand
X 2252916..2253248 389..721 100 <- Minus
X 2253317..2253398 307..388 100 <- Minus
X 2253451..2253610 147..306 100 <- Minus
X 2253958..2254087 17..146 100   Minus
X 2252596..2252665 859..927 97 <- Minus
X 2252724..2252860 722..858 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:28 Download gff for BO16416.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2147991..2148120 17..146 100   Minus
arm_X 2146629..2146698 859..927 97 <- Minus
arm_X 2146757..2146893 722..858 100 <- Minus
arm_X 2146949..2147281 389..721 100 <- Minus
arm_X 2147350..2147431 307..388 100 <- Minus
arm_X 2147484..2147643 147..306 100 <- Minus

BO16416.pep Sequence

Translation from 16 to 943

> BO16416.pep
MDKDTGDKDSAPETSASPATGWSDKLTDLVAWFEANPNLPEKIEPIVMLR
FLKCTAFDVERTKALAELNYCMRNKSPHLFMDRNMEDEMTAEGLRVSDLL
ILPGVTPQGNKLIFFRMADLDPRTRNSVEETKIFVMMSDARFTKPDVERE
TGSGADYVLDEADIAEGDVQIVDIGGYTLRHLAYVSIFVLRVYMKFLQEA
YPSRLQAMHVINCPTYLDKLISMMSPFLREEVRNMIRYHTEGMDSLYKEV
PRDMLPNEYGGKAGTVAELKAKGIQSIRDNAAYLSDERYWKVAAQSKSRW
SWFASFLDH

BO16416.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3091-PC 303 CG3091-PC 1..303 1..303 1582 100 Plus
CG3091-PA 303 CG3091-PA 1..303 1..303 1582 100 Plus
CG3823-PA 295 CG3823-PA 16..269 25..292 589 39.9 Plus
CG3191-PC 309 CG3191-PC 20..308 8..303 582 38.3 Plus
CG3191-PA 309 CG3191-PA 20..308 8..303 582 38.3 Plus