Clone Sequence Records
BO16416.3prime Sequence
778 bp (713 high quality bases) assembled on 2006-10-13
> BO16416.3prime
ATGGTCTAGAAAGCTTGCGAACCAGGACCACCGACTCTTGCTCTGAGCGG
CCACCTTCCAGTACCGCTCGTCGCTGAGATAAGCCGCGTTGTCCCTGATG
GACTGAATGCCTTTCGCCTTGAGTTCCGCTACAGTGCCCGCCTTGCCGCC
GTACTCGTTCGGCAACATGTCCCTGGGCACTTCTTTGTAAAGGCTATCCA
TACCCTCTGTGTGGTACCGGATCATGTTGCGGACTTCCTCCCTTAGGAAG
GGCGACATCATGGATATGAGCTTGTCCAGGTAAGTGGGGCAGTTGATGAC
ATGCATGGCCTGGAGTCGCGAGGGATAGGCTTCCTGCAGGAACTTCATGT
AAACACGCAGCACGAATATGGACACGTAGGCCAGGTGGCGTAGGGTGTAG
CCCCCAATGTCCACAATCTGAACATCGCCCTCGGCAATGTCCGCTTCGTC
TAGTACGTAATCAGCTCCGCTTCCTGTTTCTCGCTCTACATCCGGCTTTG
TGAATCGTGCATCACTCATCATGACAAAGATTTTGGTCTCCTCGACAGAA
TTCCGCGTTCGTGGATCCAGATCGGCCATGCGGAAGAAGATGAGCTTATT
TCCCTGGGGAGTGACTCCGGGTAATATCAAAAGGTCCGAAACCCTCAGGC
CCTCGGCGGTCATCTCGTCCTCCATGTTGCGATCCATGAACAGATGTGGG
CTCTTATTGCGCATACAATAATTTAGCTCCGCCAGGGCCTTGGTGCGTTC
CACATCAAAAGCCGTGCACTTGAGGAAT
BO16416.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3091-PA | 912 | CG3091-RA | 150..909 | 778..19 | 3800 | 100 | Minus |
CG3091-PB | 408 | CG3091-RB | 150..372 | 778..556 | 1115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:21:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3091-RC | 1286 | CG3091-RC | 260..1019 | 778..19 | 3800 | 100 | Minus |
CG3091-RA | 1219 | CG3091-RA | 193..952 | 778..19 | 3800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2252916..2253249 | 223..556 | 1670 | 100 | Plus |
X | 23542271 | X | 2253450..2253591 | 637..778 | 710 | 100 | Plus |
X | 23542271 | X | 2252723..2252861 | 85..223 | 695 | 100 | Plus |
X | 23542271 | X | 2253317..2253398 | 556..637 | 410 | 100 | Plus |
X | 23542271 | X | 2252599..2252665 | 19..85 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:20:59 has no hits.
BO16416.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:54 Download gff for
BO16416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-PA | 150..912 | 16..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:40:36 Download gff for
BO16416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-RA | 193..952 | 19..778 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:37 Download gff for
BO16416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-RA | 193..952 | 19..778 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:37 Download gff for
BO16416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2253451..2253591 | 638..778 | 100 | | Plus |
X | 2252916..2253248 | 223..555 | 100 | <- | Plus |
X | 2252599..2252665 | 19..85 | 100 | <- | Plus |
X | 2252724..2252860 | 86..222 | 100 | <- | Plus |
X | 2253317..2253398 | 556..637 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:40:36 Download gff for
BO16416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2146632..2146698 | 19..85 | 100 | <- | Plus |
arm_X | 2146757..2146893 | 86..222 | 100 | <- | Plus |
arm_X | 2146949..2147281 | 223..555 | 100 | <- | Plus |
arm_X | 2147350..2147431 | 556..637 | 100 | <- | Plus |
arm_X | 2147484..2147624 | 638..778 | 100 | | Plus |
BO16416.5prime Sequence
751 bp (749 high quality bases) assembled on 2006-10-13
> BO16416.5prime
GAAGTTATCAGTCGACATGGATAAAGATACAGGGGATAAGGACTCCGCCC
CCGAGACCAGCGCTTCGCCAGCAACTGGATGGAGCGACAAGCTGACGGAT
CTGGTCGCCTGGTTCGAGGCCAATCCCAATCTGCCCGAGAAGATCGAACC
AATAGTTATGCTACGATTCCTCAAGTGCACGGCTTTTGATGTGGAACGCA
CCAAGGCCCTGGCGGAGCTAAATTATTGTATGCGCAATAAGAGCCCACAT
CTGTTCATGGATCGCAACATGGAGGACGAGATGACCGCCGAGGGCCTGAG
GGTTTCGGACCTTTTGATATTACCCGGAGTCACTCCCCAGGGAAATAAGC
TCATCTTCTTCCGCATGGCCGATCTGGATCCACGAACGCGGAATTCTGTC
GAGGAGACCAAAATCTTTGTCATGATGAGTGATGCACGATTCACAAAGCC
GGATGTAGAGCGAGAAACAGGAAGCGGAGCTGATTACGTACTAGACGAAG
CGGACATTGCCGAGGGCGATGTTCAGATTGTGGACATTGGGGGCTACACC
CTACGCCACCTGGCCTACGTGTCCATATTCGTGCTGCGTGTTTACATGAA
GTTCCTGCAGGAAGCCTATCCCTCGCGACTCCAGGCCATGCATGTCATCA
ACTGCCCCACTTACCTGGACAAGCTCATATCCATGATGTCGCCCTTCCTA
AGGGAGGAAGTCCGCAACATGATCCGGTACCACACAGAGGGTATGGATAG
C
BO16416.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3091-PA | 912 | CG3091-RA | 1..735 | 17..751 | 3675 | 100 | Plus |
CG3091-PB | 408 | CG3091-RB | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3091-RC | 1286 | CG3091-RC | 111..845 | 17..751 | 3675 | 100 | Plus |
CG3091-RA | 1219 | CG3091-RA | 44..778 | 17..751 | 3675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2252916..2253249 | 721..388 | 1670 | 100 | Minus |
X | 23542271 | X | 2253450..2253615 | 307..142 | 815 | 99.4 | Minus |
X | 23542271 | X | 2253958..2254087 | 146..17 | 650 | 100 | Minus |
X | 23542271 | X | 2253317..2253398 | 388..307 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:05:02 has no hits.
BO16416.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:55 Download gff for
BO16416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-PA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:32:35 Download gff for
BO16416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-RA | 39..778 | 9..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:42:17 Download gff for
BO16416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-RA | 39..778 | 9..751 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:42:17 Download gff for
BO16416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2253451..2253610 | 147..306 | 100 | <- | Minus |
X | 2253958..2254092 | 9..146 | 97 | | Minus |
X | 2252831..2252860 | 722..751 | 100 | <- | Minus |
X | 2252916..2253248 | 389..721 | 100 | <- | Minus |
X | 2253317..2253398 | 307..388 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:32:35 Download gff for
BO16416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2146864..2146893 | 722..751 | 100 | <- | Minus |
arm_X | 2146949..2147281 | 389..721 | 100 | <- | Minus |
arm_X | 2147350..2147431 | 307..388 | 100 | <- | Minus |
arm_X | 2147484..2147643 | 147..306 | 100 | <- | Minus |
arm_X | 2147991..2148125 | 9..146 | 97 | | Minus |
BO16416.complete Sequence
943 bp assembled on 2006-10-11
GenBank Submission: FJ633821
> BO16416.complete
GAAGTTATCAGTCGACATGGATAAAGATACAGGGGATAAGGACTCCGCCC
CCGAGACCAGCGCTTCGCCAGCAACTGGATGGAGCGACAAGCTGACGGAT
CTGGTCGCCTGGTTCGAGGCCAATCCCAATCTGCCCGAGAAGATCGAACC
AATAGTTATGCTACGATTCCTCAAGTGCACGGCTTTTGATGTGGAACGCA
CCAAGGCCCTGGCGGAGCTAAATTATTGTATGCGCAATAAGAGCCCACAT
CTGTTCATGGATCGCAACATGGAGGACGAGATGACCGCCGAGGGCCTGAG
GGTTTCGGACCTTTTGATATTACCCGGAGTCACTCCCCAGGGAAATAAGC
TCATCTTCTTCCGCATGGCCGATCTGGATCCACGAACGCGGAATTCTGTC
GAGGAGACCAAAATCTTTGTCATGATGAGTGATGCACGATTCACAAAGCC
GGATGTAGAGCGAGAAACAGGAAGCGGAGCTGATTACGTACTAGACGAAG
CGGACATTGCCGAGGGCGATGTTCAGATTGTGGACATTGGGGGCTACACC
CTACGCCACCTGGCCTACGTGTCCATATTCGTGCTGCGTGTTTACATGAA
GTTCCTGCAGGAAGCCTATCCCTCGCGACTCCAGGCCATGCATGTCATCA
ACTGCCCCACTTACCTGGACAAGCTCATATCCATGATGTCGCCCTTCCTA
AGGGAGGAAGTCCGCAACATGATCCGGTACCACACAGAGGGTATGGATAG
CCTTTACAAAGAAGTGCCCAGGGACATGTTGCCGAACGAGTACGGCGGCA
AGGCGGGCACTGTAGCGGAACTCAAGGCGAAAGGCATTCAGTCCATCAGG
GACAACGCGGCTTATCTCAGCGACGAGCGGTACTGGAAGGTGGCCGCTCA
GAGCAAGAGTCGGTGGTCCTGGTTCGCAAGCTTTCTAGACCAT
BO16416.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3091-RC | 912 | CG3091-PC | 1..909 | 17..925 | 4545 | 100 | Plus |
CG3091-RA | 912 | CG3091-PA | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3091-RC | 1286 | CG3091-RC | 111..1019 | 17..925 | 4545 | 100 | Plus |
CG3091-RA | 1219 | CG3091-RA | 44..952 | 17..925 | 4545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:25:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2252916..2253249 | 721..388 | 1670 | 100 | Minus |
X | 23542271 | X | 2253450..2253615 | 307..142 | 815 | 99.4 | Minus |
X | 23542271 | X | 2252723..2252861 | 859..721 | 695 | 100 | Minus |
X | 23542271 | X | 2253958..2254087 | 146..17 | 650 | 100 | Minus |
X | 23542271 | X | 2253317..2253398 | 388..307 | 410 | 100 | Minus |
X | 23542271 | X | 2252599..2252665 | 925..859 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:25:04 has no hits.
BO16416.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:06 Download gff for
BO16416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-RA | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:33 Download gff for
BO16416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-RA | 39..952 | 9..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:00:28 Download gff for
BO16416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-RA | 44..952 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:06 Download gff for
BO16416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-RA | 39..952 | 9..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:34 Download gff for
BO16416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3091-RA | 44..952 | 17..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:34 Download gff for
BO16416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2252916..2253248 | 389..721 | 100 | <- | Minus |
X | 2253317..2253398 | 307..388 | 100 | <- | Minus |
X | 2253451..2253610 | 147..306 | 100 | <- | Minus |
X | 2253958..2254087 | 17..146 | 100 | | Minus |
X | 2252596..2252665 | 859..927 | 97 | <- | Minus |
X | 2252724..2252860 | 722..858 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:00:28 Download gff for
BO16416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2147991..2148120 | 17..146 | 100 | | Minus |
arm_X | 2146629..2146698 | 859..927 | 97 | <- | Minus |
arm_X | 2146757..2146893 | 722..858 | 100 | <- | Minus |
arm_X | 2146949..2147281 | 389..721 | 100 | <- | Minus |
arm_X | 2147350..2147431 | 307..388 | 100 | <- | Minus |
arm_X | 2147484..2147643 | 147..306 | 100 | <- | Minus |
BO16416.pep Sequence
Translation from 16 to 943
> BO16416.pep
MDKDTGDKDSAPETSASPATGWSDKLTDLVAWFEANPNLPEKIEPIVMLR
FLKCTAFDVERTKALAELNYCMRNKSPHLFMDRNMEDEMTAEGLRVSDLL
ILPGVTPQGNKLIFFRMADLDPRTRNSVEETKIFVMMSDARFTKPDVERE
TGSGADYVLDEADIAEGDVQIVDIGGYTLRHLAYVSIFVLRVYMKFLQEA
YPSRLQAMHVINCPTYLDKLISMMSPFLREEVRNMIRYHTEGMDSLYKEV
PRDMLPNEYGGKAGTVAELKAKGIQSIRDNAAYLSDERYWKVAAQSKSRW
SWFASFLDH
BO16416.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3091-PC | 303 | CG3091-PC | 1..303 | 1..303 | 1582 | 100 | Plus |
CG3091-PA | 303 | CG3091-PA | 1..303 | 1..303 | 1582 | 100 | Plus |
CG3823-PA | 295 | CG3823-PA | 16..269 | 25..292 | 589 | 39.9 | Plus |
CG3191-PC | 309 | CG3191-PC | 20..308 | 8..303 | 582 | 38.3 | Plus |
CG3191-PA | 309 | CG3191-PA | 20..308 | 8..303 | 582 | 38.3 | Plus |