Clone BO16417 Report

Search the DGRC for BO16417

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCpr31A-RA
Protein status:BO16417.pep: validated full length
Sequenced Size:1054

Clone Sequence Records

BO16417.5prime Sequence

532 bp (477 high quality bases) assembled on 2006-10-13

> BO16417.5prime
GAAGTTATCAGTCGACATGGCAGGCAAACTCCTGACTGTTTTCTCCCTTC
TGGCCATCGCCGCATCCTGTCGCGCAGGATTCGCCGCCACCTATGCCGGC
TATCATCCCGCCTATGCCACCTACCAGGCACCGGCTGCCGTCTACCATGC
GGCACCAGTGGCCCAGGCTGCTGTCTACCAGCAGGCGGCTCCAGTTTACG
CCAAGACCTTTGTGCCAGCTGCTCCTGTATACACCAGATCCTATGCCCTG
CCCACTCCAGTTGTCAAGGCGGTGGCTCCTGCTCCTCTCGCTCTGCCCGT
TGCTGCGCCGGTGGTGAAGACCCTGGCTGCTGCTCCCGTGGTCGCTGCTC
CAGTGGTCAAGACTGTGGCTGCTGCTCCCGCTGTACTGAAACAGGTAGAG
TTGGAATCTTCGCCGCGCTACGACTTCTCCTACGGCGTTCACGACAGCAT
CACCGGCGATATCAAAAGCCAGGTGGAGACCCGTGACGGTGGCAATGTTG
TGGGATCCTATTCCGTCCTGGATGCCGATGGT

BO16417.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG33302-PA 1023 CG33302-RA 1..516 17..532 2580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr31A-RA 1229 CG33302-RA 144..659 17..532 2580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10054862..10055365 29..532 2520 100 Plus
Blast to na_te.dros performed 2015-02-10 23:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2759..2854 378..280 135 65 Minus

BO16417.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:56 Download gff for BO16417.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33302-PA 1..516 17..532 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:50:49 Download gff for BO16417.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr31A-RA 138..659 12..532 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:10 Download gff for BO16417.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr31A-RA 138..659 12..532 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:10 Download gff for BO16417.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10054862..10055365 29..532 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:50:49 Download gff for BO16417.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10054862..10055365 29..532 100   Plus

BO16417.3prime Sequence

481 bp (413 high quality bases) assembled on 2006-10-13

> BO16417.3prime
ATGGTCTAGAAAGCTTGCGGCCGTCTTCTTGTTCTCCTCCGTAACTGGAG
CAGCGGTGGTGGTGGTGCTGCTGGCCTCCGGGGCAGATCGTGCCTCCACC
ACGTCGGAATCATCGCTGTCAGGAGCTGGGGAGGATTGACCAGCTGGCGA
GTAGGGTGGGAACTGCTGATCCTGGGGATAGGTCTGCTGCTGCTGCTCCT
GCTGCTGCTGCTGACCCTCGTTGTAGTCAATGGGAGTGGGTTCCAGCTCG
GGCTGTTGGGCCACAGGAGACTCCACCACCTCACCCTGCTGCTCGGCAAC
CTGTTGAATCTGCTGTGGGGCGAACACCTGCTGGTGTGGATAGTAGATGG
GAGCGGGCAGCGAGGCAACGGGAGCGGAGGAAATATGGACGGGAACTGGA
GCTGGAGCGGAGACGGAAACCACTGGAGCAGCAACTGCGCGGGCAGCGAC
AACCGGTTCCCGCTGGACCACCGCATTTGAT

BO16417.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG33302-PA 1023 CG33302-RA 562..1020 477..19 2270 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr31A-RA 1229 CG33302-RA 705..1163 477..19 2280 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10055411..10055869 477..19 2280 99.8 Minus
Blast to na_te.dros performed on 2015-02-03 05:42:07 has no hits.

BO16417.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:56 Download gff for BO16417.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33302-PA 558..1023 18..481 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:19:47 Download gff for BO16417.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr31A-RA 701..1169 11..481 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:30:48 Download gff for BO16417.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr31A-RA 701..1169 11..481 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:30:48 Download gff for BO16417.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10055407..10055875 11..481 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:19:47 Download gff for BO16417.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10055407..10055875 11..481 98   Minus

BO16417.complete Sequence

1054 bp assembled on 2007-03-23

GenBank Submission: FJ633822

> BO16417.complete
GAAGTTATCAGTCGACATGGCAGGCAAACTCCTGACTGTTTTCTCCCTTC
TGGCCATCGCCGCATCCTGTCGCGCAGGATTCGCCGCCACCTATGCCGGC
TATCATCCCGCCTATGCCACCTACCAGGCACCGGCTGCCGTCTACCATGC
GGCACCAGTGGCCCAGGCTGCTGTCTACCAGCAGGCGGCTCCAGTTTACG
CCAAGACCTTTGTGCCAGCTGCTCCTGTATACACCAGATCCTATGCCCTG
CCCACTCCAGTTGTCAAGGCGGTGGCTCCTGCTCCTCTCGCTCTGCCCGT
TGCTGCGCCGGTGGTGAAGACCCTGGCTGCTGCTCCCGTGGTCGCTGCTC
CAGTGGTCAAGACTGTGGCTGCTGCTCCCGCTGTACTGAAACAGGTAGAG
TTGGAATCTTCGCCGCGCTACGACTTCTCCTACGGCGTTCACGACAGCAT
CACCGGCGATATCAAAAGCCAGGTGGAGACCCGTGACGGTGGCAATGTTG
TGGGATCCTATTCCGTCCTGGATGCCGATGGTTTCAAGCGCACAGTGACC
TACACCGCCGACGACATCAACGGATTCAATGCGGTGGTCCAGCGGGAACC
GGTTGTCGCTGCCCGCGCAGTTGCTGCTCCAGTGGTTTCCGTCTCCGCTC
CAGCTCCAGTTCCCGTCCATATTTCCTCCGCTCCCGTTGCCTCGCTGCCC
GCTCCCATCTACTATCCACACCAGCAGGTGTTCGCCCCACAGCAGATTCA
ACAGGTTGCCGAGCAGCAGGGTGAGGTGGTGGAGTCTCCTGTGGCCCAAC
AGCCCGAGCTGGAACCCACTCCCATTGACTACAACGAGGGTCAGCAGCAG
CAGCAGGAGCAGCAGCAGCAGACCTATCCCCAGGATCAGCAGTTCCCACC
CTACTCGCCAGCTGGTCAATCCTCCCCAGCTCCTGACAGCGATGATTCCG
ACGTGGTGGAGGCACGATCTGCCCCGGAGGCCAGCAGCACCACCACCACC
GCTGCTCCAGTTACGGAGGAGAACAAGAAGACGGCCGCAAGCTTTCTAGA
CCAT

BO16417.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr31A-RA 1023 CG33302-PA 1..1020 17..1036 5085 99.9 Plus
Ccp84Ae-RA 627 CG1330-PA 256..343 524..611 185 80.7 Plus
Cpr64Ab-RA 363 CG15007-PA 207..309 502..604 185 78.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr31A-RA 1229 CG33302-RA 144..1163 17..1036 5085 99.9 Plus
Ccp84Ae-RA 754 CG1330-RA 311..398 524..611 185 80.7 Plus
Cpr64Ab-RA 552 CG15007-RA 275..377 502..604 185 78.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10054862..10055869 29..1036 5025 99.9 Plus
3R 32079331 3R 6691243..6691330 611..524 185 80.7 Minus
3L 28110227 3L 4211055..4211157 604..502 185 78.6 Minus
Blast to na_te.dros performed 2014-11-27 16:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2759..2854 378..280 135 65 Minus

BO16417.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:44 Download gff for BO16417.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr31A-RA 1..1023 17..1037 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:14 Download gff for BO16417.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr31A-RA 136..1167 12..1044 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:01 Download gff for BO16417.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr31A-RA 144..1163 17..1038 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:44 Download gff for BO16417.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr31A-RA 136..1167 12..1044 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:50 Download gff for BO16417.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr31A-RA 144..1163 17..1038 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:50 Download gff for BO16417.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10054862..10055869 29..1038 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:01 Download gff for BO16417.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10054862..10055869 29..1038 99   Plus

BO16417.pep Sequence

Translation from 16 to 1054

> BO16417.pep
MAGKLLTVFSLLAIAASCRAGFAATYAGYHPAYATYQAPAAVYHAAPVAQ
AAVYQQAAPVYAKTFVPAAPVYTRSYALPTPVVKAVAPAPLALPVAAPVV
KTLAAAPVVAAPVVKTVAAAPAVLKQVELESSPRYDFSYGVHDSITGDIK
SQVETRDGGNVVGSYSVLDADGFKRTVTYTADDINGFNAVVQREPVVAAR
AVAAPVVSVSAPAPVPVHISSAPVASLPAPIYYPHQQVFAPQQIQQVAEQ
QGEVVESPVAQQPELEPTPIDYNEGQQQQQEQQQQTYPQDQQFPPYSPAG
QSSPAPDSDDSDVVEARSAPEASSTTTTAAPVTEENKKTAASFLDH

BO16417.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr31A-PA 340 CG33302-PA 1..340 1..340 1718 100 Plus
Cpr64Ad-PB 247 CG1259-PB 4..247 6..226 339 42.2 Plus
Ccp84Ab-PA 221 CG1252-PA 7..176 76..248 330 47 Plus
Ccp84Aa-PA 205 CG2360-PA 7..176 76..248 324 46.4 Plus
Ccp84Ad-PA 199 CG2341-PA 28..176 96..248 310 47.5 Plus