Clone Sequence Records
BO16417.5prime Sequence
532 bp (477 high quality bases) assembled on 2006-10-13
> BO16417.5prime
GAAGTTATCAGTCGACATGGCAGGCAAACTCCTGACTGTTTTCTCCCTTC
TGGCCATCGCCGCATCCTGTCGCGCAGGATTCGCCGCCACCTATGCCGGC
TATCATCCCGCCTATGCCACCTACCAGGCACCGGCTGCCGTCTACCATGC
GGCACCAGTGGCCCAGGCTGCTGTCTACCAGCAGGCGGCTCCAGTTTACG
CCAAGACCTTTGTGCCAGCTGCTCCTGTATACACCAGATCCTATGCCCTG
CCCACTCCAGTTGTCAAGGCGGTGGCTCCTGCTCCTCTCGCTCTGCCCGT
TGCTGCGCCGGTGGTGAAGACCCTGGCTGCTGCTCCCGTGGTCGCTGCTC
CAGTGGTCAAGACTGTGGCTGCTGCTCCCGCTGTACTGAAACAGGTAGAG
TTGGAATCTTCGCCGCGCTACGACTTCTCCTACGGCGTTCACGACAGCAT
CACCGGCGATATCAAAAGCCAGGTGGAGACCCGTGACGGTGGCAATGTTG
TGGGATCCTATTCCGTCCTGGATGCCGATGGT
BO16417.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:02:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33302-PA | 1023 | CG33302-RA | 1..516 | 17..532 | 2580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:03:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr31A-RA | 1229 | CG33302-RA | 144..659 | 17..532 | 2580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10054862..10055365 | 29..532 | 2520 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 23:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2759..2854 | 378..280 | 135 | 65 | Minus |
BO16417.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:56 Download gff for
BO16417.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33302-PA | 1..516 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:50:49 Download gff for
BO16417.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr31A-RA | 138..659 | 12..532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:21:10 Download gff for
BO16417.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr31A-RA | 138..659 | 12..532 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:21:10 Download gff for
BO16417.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10054862..10055365 | 29..532 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:50:49 Download gff for
BO16417.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10054862..10055365 | 29..532 | 100 | | Plus |
BO16417.3prime Sequence
481 bp (413 high quality bases) assembled on 2006-10-13
> BO16417.3prime
ATGGTCTAGAAAGCTTGCGGCCGTCTTCTTGTTCTCCTCCGTAACTGGAG
CAGCGGTGGTGGTGGTGCTGCTGGCCTCCGGGGCAGATCGTGCCTCCACC
ACGTCGGAATCATCGCTGTCAGGAGCTGGGGAGGATTGACCAGCTGGCGA
GTAGGGTGGGAACTGCTGATCCTGGGGATAGGTCTGCTGCTGCTGCTCCT
GCTGCTGCTGCTGACCCTCGTTGTAGTCAATGGGAGTGGGTTCCAGCTCG
GGCTGTTGGGCCACAGGAGACTCCACCACCTCACCCTGCTGCTCGGCAAC
CTGTTGAATCTGCTGTGGGGCGAACACCTGCTGGTGTGGATAGTAGATGG
GAGCGGGCAGCGAGGCAACGGGAGCGGAGGAAATATGGACGGGAACTGGA
GCTGGAGCGGAGACGGAAACCACTGGAGCAGCAACTGCGCGGGCAGCGAC
AACCGGTTCCCGCTGGACCACCGCATTTGAT
BO16417.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33302-PA | 1023 | CG33302-RA | 562..1020 | 477..19 | 2270 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 05:42:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr31A-RA | 1229 | CG33302-RA | 705..1163 | 477..19 | 2280 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 05:42:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10055411..10055869 | 477..19 | 2280 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-03 05:42:07 has no hits.
BO16417.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:56 Download gff for
BO16417.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33302-PA | 558..1023 | 18..481 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:19:47 Download gff for
BO16417.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr31A-RA | 701..1169 | 11..481 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:30:48 Download gff for
BO16417.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr31A-RA | 701..1169 | 11..481 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:30:48 Download gff for
BO16417.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10055407..10055875 | 11..481 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:19:47 Download gff for
BO16417.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10055407..10055875 | 11..481 | 98 | | Minus |
BO16417.complete Sequence
1054 bp assembled on 2007-03-23
GenBank Submission: FJ633822
> BO16417.complete
GAAGTTATCAGTCGACATGGCAGGCAAACTCCTGACTGTTTTCTCCCTTC
TGGCCATCGCCGCATCCTGTCGCGCAGGATTCGCCGCCACCTATGCCGGC
TATCATCCCGCCTATGCCACCTACCAGGCACCGGCTGCCGTCTACCATGC
GGCACCAGTGGCCCAGGCTGCTGTCTACCAGCAGGCGGCTCCAGTTTACG
CCAAGACCTTTGTGCCAGCTGCTCCTGTATACACCAGATCCTATGCCCTG
CCCACTCCAGTTGTCAAGGCGGTGGCTCCTGCTCCTCTCGCTCTGCCCGT
TGCTGCGCCGGTGGTGAAGACCCTGGCTGCTGCTCCCGTGGTCGCTGCTC
CAGTGGTCAAGACTGTGGCTGCTGCTCCCGCTGTACTGAAACAGGTAGAG
TTGGAATCTTCGCCGCGCTACGACTTCTCCTACGGCGTTCACGACAGCAT
CACCGGCGATATCAAAAGCCAGGTGGAGACCCGTGACGGTGGCAATGTTG
TGGGATCCTATTCCGTCCTGGATGCCGATGGTTTCAAGCGCACAGTGACC
TACACCGCCGACGACATCAACGGATTCAATGCGGTGGTCCAGCGGGAACC
GGTTGTCGCTGCCCGCGCAGTTGCTGCTCCAGTGGTTTCCGTCTCCGCTC
CAGCTCCAGTTCCCGTCCATATTTCCTCCGCTCCCGTTGCCTCGCTGCCC
GCTCCCATCTACTATCCACACCAGCAGGTGTTCGCCCCACAGCAGATTCA
ACAGGTTGCCGAGCAGCAGGGTGAGGTGGTGGAGTCTCCTGTGGCCCAAC
AGCCCGAGCTGGAACCCACTCCCATTGACTACAACGAGGGTCAGCAGCAG
CAGCAGGAGCAGCAGCAGCAGACCTATCCCCAGGATCAGCAGTTCCCACC
CTACTCGCCAGCTGGTCAATCCTCCCCAGCTCCTGACAGCGATGATTCCG
ACGTGGTGGAGGCACGATCTGCCCCGGAGGCCAGCAGCACCACCACCACC
GCTGCTCCAGTTACGGAGGAGAACAAGAAGACGGCCGCAAGCTTTCTAGA
CCAT
BO16417.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr31A-RA | 1023 | CG33302-PA | 1..1020 | 17..1036 | 5085 | 99.9 | Plus |
Ccp84Ae-RA | 627 | CG1330-PA | 256..343 | 524..611 | 185 | 80.7 | Plus |
Cpr64Ab-RA | 363 | CG15007-PA | 207..309 | 502..604 | 185 | 78.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr31A-RA | 1229 | CG33302-RA | 144..1163 | 17..1036 | 5085 | 99.9 | Plus |
Ccp84Ae-RA | 754 | CG1330-RA | 311..398 | 524..611 | 185 | 80.7 | Plus |
Cpr64Ab-RA | 552 | CG15007-RA | 275..377 | 502..604 | 185 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10054862..10055869 | 29..1036 | 5025 | 99.9 | Plus |
3R | 32079331 | 3R | 6691243..6691330 | 611..524 | 185 | 80.7 | Minus |
3L | 28110227 | 3L | 4211055..4211157 | 604..502 | 185 | 78.6 | Minus |
Blast to na_te.dros performed 2014-11-27 16:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2759..2854 | 378..280 | 135 | 65 | Minus |
BO16417.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:44 Download gff for
BO16417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr31A-RA | 1..1023 | 17..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:14 Download gff for
BO16417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr31A-RA | 136..1167 | 12..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:01 Download gff for
BO16417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr31A-RA | 144..1163 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:44 Download gff for
BO16417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr31A-RA | 136..1167 | 12..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:50 Download gff for
BO16417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr31A-RA | 144..1163 | 17..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:50 Download gff for
BO16417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10054862..10055869 | 29..1038 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:01 Download gff for
BO16417.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10054862..10055869 | 29..1038 | 99 | | Plus |
BO16417.pep Sequence
Translation from 16 to 1054
> BO16417.pep
MAGKLLTVFSLLAIAASCRAGFAATYAGYHPAYATYQAPAAVYHAAPVAQ
AAVYQQAAPVYAKTFVPAAPVYTRSYALPTPVVKAVAPAPLALPVAAPVV
KTLAAAPVVAAPVVKTVAAAPAVLKQVELESSPRYDFSYGVHDSITGDIK
SQVETRDGGNVVGSYSVLDADGFKRTVTYTADDINGFNAVVQREPVVAAR
AVAAPVVSVSAPAPVPVHISSAPVASLPAPIYYPHQQVFAPQQIQQVAEQ
QGEVVESPVAQQPELEPTPIDYNEGQQQQQEQQQQTYPQDQQFPPYSPAG
QSSPAPDSDDSDVVEARSAPEASSTTTTAAPVTEENKKTAASFLDH
BO16417.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr31A-PA | 340 | CG33302-PA | 1..340 | 1..340 | 1718 | 100 | Plus |
Cpr64Ad-PB | 247 | CG1259-PB | 4..247 | 6..226 | 339 | 42.2 | Plus |
Ccp84Ab-PA | 221 | CG1252-PA | 7..176 | 76..248 | 330 | 47 | Plus |
Ccp84Aa-PA | 205 | CG2360-PA | 7..176 | 76..248 | 324 | 46.4 | Plus |
Ccp84Ad-PA | 199 | CG2341-PA | 28..176 | 96..248 | 310 | 47.5 | Plus |