Clone BO16418 Report

Search the DGRC for BO16418

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptAdh-RC
Protein status:BO16418.pep: validated full length
Sequenced Size:802

Clone Sequence Records

BO16418.3prime Sequence

664 bp (542 high quality bases) assembled on 2006-10-13

> BO16418.3prime
ATGGTCTAGAAAGCTTGCGATGCCGGAGTCCCAGTGCTTGGTCCACTGGA
TGGCCTCCAGGGTGCCCAAGTCCAGTTTCCAGATGGCTCCGTTCTGGTTC
AGCTCGATAGCCTTGACGAAGTTCTCGGCGCAGGCCAACGAGGGCTGGGT
GGGATGAGCCAGGAGCTTCTCGGCAACCTGAGGCTCAACATCCAACCAGG
AGTTGAACGTGTGCACCAGGGTGGTGCGGGTGATGCCGGGGTTCACAGTG
TAAGCCGTCACGCCGGTAATGGGGGCCAGTTTCGCCAGGGAGCTGGTGAA
GTTGACCACGGCGGCCTTGGTGCCGGAGTAGACGGGCACCTGGTAGATGG
CATTGAATCCAGTGACGGATCCAATGTTGCAGATGATACCACCGGGACCG
CCCTTGCGCTTGTCCCAGAAGTCCAGAATGGCCGTCGTGGTGTTGACCAG
GCCAGTGTAGTTGACGGCAATGGTGCGCTCGATCTGGTGATCGTCCAGGA
TACCAGCTCCGTTGATCAGGACATCGACGGTCTTCAGCTGGGCGAAGATG
GTCTTCAGCAGCTTGGTGGTCTCGGCAATGGGCACGGTCACATCATAGGG
GTAGAAGGTGACGGTCACCTTTGAATTGATTGCCTTCAGCTCGGCCATGG
CAGCCGGGTTCTCA

BO16418.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3481-PC 771 Adh-RC 123..768 664..19 3180 99.6 Minus
CG3481-PI 771 Adh-RI 123..768 664..19 3180 99.6 Minus
CG3481-PH 771 Adh-RH 123..768 664..19 3180 99.6 Minus
CG3481-PF 771 Adh-RF 123..768 664..19 3180 99.6 Minus
CG3481-PE 771 Adh-RE 123..768 664..19 3180 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:53:15
Subject Length Description Subject Range Query Range Score Percent Strand
Adhr-RB 2024 CG3484-RB 195..840 664..19 3200 99.7 Minus
Adhr-RA 2080 CG3484-RA 251..896 664..19 3200 99.7 Minus
Adh-RE 1001 CG3481-RE 195..840 664..19 3200 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:53:09
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14616526..14616907 664..283 1880 99.5 Minus
2L 23513712 2L 14616977..14617241 283..19 1325 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:53:12 has no hits.

BO16418.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:57 Download gff for BO16418.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3481-PE 124..771 15..663 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:38 Download gff for BO16418.3prime
Subject Subject Range Query Range Percent Splice Strand
Adh-RH 196..844 14..663 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:44 Download gff for BO16418.3prime
Subject Subject Range Query Range Percent Splice Strand
Adh-RE 196..844 14..663 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:44 Download gff for BO16418.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 14616527..14616907 283..663 99 -> Minus
2L 14616978..14617245 14..282 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:38 Download gff for BO16418.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14616527..14616907 283..663 99 -> Minus
arm_2L 14616978..14617245 14..282 99   Minus

BO16418.5prime Sequence

630 bp (526 high quality bases) assembled on 2006-10-13

> BO16418.5prime
GAAGTTATCAGTCGACATGTCGTTTACTTTGACCAACAAGAACGTGATTT
TCGTTGCCGGTCTGGGAGGCATTGGTCTGGACACCAGCAAGGAGCTGCTC
AAGCGCGATCTGAAGAACCTGGTGATCCTCGACCGCATTGAGAACCCGGC
TGCCATTGCCGAGCTGAAGGCAATCAATCCAAAGGTGACCGTCACCTTCT
ACCCCTATGATGTGACCGTGCCCATTGCCGAGACCACCAAGCTGCTGAAG
ACCATCTTCGCCCAGCTGAAGACCGTCGATGTCCTGATCAACGGAGCTGG
TATCCTGGACGATCACCAGATCGAGCGCACCATTGCCGTCAACTACACTG
GCCTGGTCAACACCACGACGGCCATTCTGGACTTCTGGGACAAGCGCAAG
GGCGGTCCCGGTGGTATCATCTGCAACATTGGATCCGTCACTGGATTCAA
TGCCATCTACCAGGTGCCCGTCTACTCCGGCACCAAGGCCGCCGTGGTCA
ACTTCACCAGCTCCCTGGCGAAACTGGCCCCCATTACCGGCGTGACGGCT
TACACTGTGAACCCCGGCATCACCCGCACCACCCTGGTGCACACGTTCAA
CTCCTGGTTGGATGTTGAGCCTCAGGTTGC

BO16418.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3481-PC 771 Adh-RC 1..614 17..630 3070 100 Plus
CG3481-PI 771 Adh-RI 1..614 17..630 3070 100 Plus
CG3481-PH 771 Adh-RH 1..614 17..630 3070 100 Plus
CG3481-PF 771 Adh-RF 1..614 17..630 3070 100 Plus
CG3481-PE 771 Adh-RE 1..614 17..630 3070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
Adhr-RB 2024 CG3484-RB 72..686 16..630 3075 100 Plus
Adhr-RA 2080 CG3484-RA 128..742 16..630 3075 100 Plus
Adh-RE 1001 CG3481-RE 72..686 16..630 3075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14616501..14616907 114..520 2035 100 Plus
2L 23513712 2L 14616977..14617087 520..630 555 100 Plus
2L 23513712 2L 14616338..14616437 16..115 500 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:31:36 has no hits.

BO16418.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:58 Download gff for BO16418.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3481-PE 1..614 17..630 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:26 Download gff for BO16418.5prime
Subject Subject Range Query Range Percent Splice Strand
Adh-RH 66..686 10..630 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:37 Download gff for BO16418.5prime
Subject Subject Range Query Range Percent Splice Strand
Adh-RE 66..686 10..630 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:37 Download gff for BO16418.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 14616332..14616437 10..115 98 -> Plus
2L 14616503..14616907 116..520 100 -> Plus
2L 14616978..14617087 521..630 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:26 Download gff for BO16418.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14616332..14616437 10..115 98 -> Plus
arm_2L 14616503..14616907 116..520 100 -> Plus
arm_2L 14616978..14617087 521..630 100   Plus

BO16418.complete Sequence

802 bp assembled on 2006-10-11

GenBank Submission: FJ633823

> BO16418.complete
GAAGTTATCAGTCGACATGTCGTTTACTTTGACCAACAAGAACGTGATTT
TCGTTGCCGGTCTGGGAGGCATTGGTCTGGACACCAGCAAGGAGCTGCTC
AAGCGCGATCTGAAGAACCTGGTGATCCTCGACCGCATTGAGAACCCGGC
TGCCATTGCCGAGCTGAAGGCAATCAATCCAAAGGTGACCGTCACCTTCT
ACCCCTATGATGTGACCGTGCCCATTGCCGAGACCACCAAGCTGCTGAAG
ACCATCTTCGCCCAGCTGAAGACCGTCGATGTCCTGATCAACGGAGCTGG
TATCCTGGACGATCACCAGATCGAGCGCACCATTGCCGTCAACTACACTG
GCCTGGTCAACACCACGACGGCCATTCTGGACTTCTGGGACAAGCGCAAG
GGCGGTCCCGGTGGTATCATCTGCAACATTGGATCCGTCACTGGATTCAA
TGCCATCTACCAGGTGCCCGTCTACTCCGGCACCAAGGCCGCCGTGGTCA
ACTTCACCAGCTCCCTGGCGAAACTGGCCCCCATTACCGGCGTGACGGCT
TACACTGTGAACCCCGGCATCACCCGCACCACCCTGGTGCACACGTTCAA
CTCCTGGTTGGATGTTGAGCCTCAGGTTGCCGAGAAGCTCCTGGCTCATC
CCACCCAGCCCTCGTTGGCCTGCGCCGAGAACTTCGTCAAGGCTATCGAG
CTGAACCAGAACGGAGCCATCTGGAAACTGGACTTGGGCACCCTGGAGGC
CATCCAGTGGACCAAGCACTGGGACTCCGGCATCGCAAGCTTTCTAGACC
AT

BO16418.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
Adh-RE 771 CG3481-PE 1..768 17..784 3840 100 Plus
Adh-RF 771 CG3481-PF 1..768 17..784 3840 100 Plus
Adh-RH 771 CG3481-PH 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
Adhr-RB 2024 CG3484-RB 72..840 16..784 3845 100 Plus
Adhr-RA 2080 CG3484-RA 128..896 16..784 3845 100 Plus
Adh-RE 1001 CG3481-RE 72..840 16..784 3845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:53:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14616501..14616907 114..520 2035 100 Plus
2L 23513712 2L 14616977..14617241 520..784 1325 100 Plus
2L 23513712 2L 14616338..14616437 16..115 500 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:53:08 has no hits.

BO16418.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:08 Download gff for BO16418.complete
Subject Subject Range Query Range Percent Splice Strand
Adh-RH 1..771 17..788 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:34 Download gff for BO16418.complete
Subject Subject Range Query Range Percent Splice Strand
Adh-RH 64..842 10..789 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:19 Download gff for BO16418.complete
Subject Subject Range Query Range Percent Splice Strand
Adh-RH 73..840 17..786 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:08 Download gff for BO16418.complete
Subject Subject Range Query Range Percent Splice Strand
Adh-RH 64..842 10..789 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:07 Download gff for BO16418.complete
Subject Subject Range Query Range Percent Splice Strand
Adh-RE 73..840 17..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:07 Download gff for BO16418.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14616503..14616907 116..520 100 -> Plus
2L 14616978..14617241 521..786 99   Plus
2L 14616339..14616437 17..115 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:19 Download gff for BO16418.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14616339..14616437 17..115 100 -> Plus
arm_2L 14616503..14616907 116..520 100 -> Plus
arm_2L 14616978..14617241 521..786 99   Plus

BO16418.pep Sequence

Translation from 16 to 802

> BO16418.pep
MSFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAEL
KAINPKVTVTFYPYDVTVPIAETTKLLKTIFAQLKTVDVLINGAGILDDH
QIERTIAVNYTGLVNTTTAILDFWDKRKGGPGGIICNIGSVTGFNAIYQV
PVYSGTKAAVVNFTSSLAKLAPITGVTAYTVNPGITRTTLVHTFNSWLDV
EPQVAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDLGTLEAIQWTK
HWDSGIASFLDH

BO16418.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
Adh-PE 256 CG3481-PE 1..256 1..256 1316 100 Plus
Adh-PF 256 CG3481-PF 1..256 1..256 1316 100 Plus
Adh-PH 256 CG3481-PH 1..256 1..256 1316 100 Plus
Adh-PI 256 CG3481-PI 1..256 1..256 1316 100 Plus
Adh-PC 256 CG3481-PC 1..256 1..256 1316 100 Plus