Clone Sequence Records
BO16418.3prime Sequence
664 bp (542 high quality bases) assembled on 2006-10-13
> BO16418.3prime
ATGGTCTAGAAAGCTTGCGATGCCGGAGTCCCAGTGCTTGGTCCACTGGA
TGGCCTCCAGGGTGCCCAAGTCCAGTTTCCAGATGGCTCCGTTCTGGTTC
AGCTCGATAGCCTTGACGAAGTTCTCGGCGCAGGCCAACGAGGGCTGGGT
GGGATGAGCCAGGAGCTTCTCGGCAACCTGAGGCTCAACATCCAACCAGG
AGTTGAACGTGTGCACCAGGGTGGTGCGGGTGATGCCGGGGTTCACAGTG
TAAGCCGTCACGCCGGTAATGGGGGCCAGTTTCGCCAGGGAGCTGGTGAA
GTTGACCACGGCGGCCTTGGTGCCGGAGTAGACGGGCACCTGGTAGATGG
CATTGAATCCAGTGACGGATCCAATGTTGCAGATGATACCACCGGGACCG
CCCTTGCGCTTGTCCCAGAAGTCCAGAATGGCCGTCGTGGTGTTGACCAG
GCCAGTGTAGTTGACGGCAATGGTGCGCTCGATCTGGTGATCGTCCAGGA
TACCAGCTCCGTTGATCAGGACATCGACGGTCTTCAGCTGGGCGAAGATG
GTCTTCAGCAGCTTGGTGGTCTCGGCAATGGGCACGGTCACATCATAGGG
GTAGAAGGTGACGGTCACCTTTGAATTGATTGCCTTCAGCTCGGCCATGG
CAGCCGGGTTCTCA
BO16418.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3481-PC | 771 | Adh-RC | 123..768 | 664..19 | 3180 | 99.6 | Minus |
CG3481-PI | 771 | Adh-RI | 123..768 | 664..19 | 3180 | 99.6 | Minus |
CG3481-PH | 771 | Adh-RH | 123..768 | 664..19 | 3180 | 99.6 | Minus |
CG3481-PF | 771 | Adh-RF | 123..768 | 664..19 | 3180 | 99.6 | Minus |
CG3481-PE | 771 | Adh-RE | 123..768 | 664..19 | 3180 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:53:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adhr-RB | 2024 | CG3484-RB | 195..840 | 664..19 | 3200 | 99.7 | Minus |
Adhr-RA | 2080 | CG3484-RA | 251..896 | 664..19 | 3200 | 99.7 | Minus |
Adh-RE | 1001 | CG3481-RE | 195..840 | 664..19 | 3200 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:53:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14616526..14616907 | 664..283 | 1880 | 99.5 | Minus |
2L | 23513712 | 2L | 14616977..14617241 | 283..19 | 1325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:53:12 has no hits.
BO16418.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:57 Download gff for
BO16418.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3481-PE | 124..771 | 15..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:07:38 Download gff for
BO16418.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adh-RH | 196..844 | 14..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:44 Download gff for
BO16418.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adh-RE | 196..844 | 14..663 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:44 Download gff for
BO16418.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14616527..14616907 | 283..663 | 99 | -> | Minus |
2L | 14616978..14617245 | 14..282 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:07:38 Download gff for
BO16418.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14616527..14616907 | 283..663 | 99 | -> | Minus |
arm_2L | 14616978..14617245 | 14..282 | 99 | | Minus |
BO16418.5prime Sequence
630 bp (526 high quality bases) assembled on 2006-10-13
> BO16418.5prime
GAAGTTATCAGTCGACATGTCGTTTACTTTGACCAACAAGAACGTGATTT
TCGTTGCCGGTCTGGGAGGCATTGGTCTGGACACCAGCAAGGAGCTGCTC
AAGCGCGATCTGAAGAACCTGGTGATCCTCGACCGCATTGAGAACCCGGC
TGCCATTGCCGAGCTGAAGGCAATCAATCCAAAGGTGACCGTCACCTTCT
ACCCCTATGATGTGACCGTGCCCATTGCCGAGACCACCAAGCTGCTGAAG
ACCATCTTCGCCCAGCTGAAGACCGTCGATGTCCTGATCAACGGAGCTGG
TATCCTGGACGATCACCAGATCGAGCGCACCATTGCCGTCAACTACACTG
GCCTGGTCAACACCACGACGGCCATTCTGGACTTCTGGGACAAGCGCAAG
GGCGGTCCCGGTGGTATCATCTGCAACATTGGATCCGTCACTGGATTCAA
TGCCATCTACCAGGTGCCCGTCTACTCCGGCACCAAGGCCGCCGTGGTCA
ACTTCACCAGCTCCCTGGCGAAACTGGCCCCCATTACCGGCGTGACGGCT
TACACTGTGAACCCCGGCATCACCCGCACCACCCTGGTGCACACGTTCAA
CTCCTGGTTGGATGTTGAGCCTCAGGTTGC
BO16418.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3481-PC | 771 | Adh-RC | 1..614 | 17..630 | 3070 | 100 | Plus |
CG3481-PI | 771 | Adh-RI | 1..614 | 17..630 | 3070 | 100 | Plus |
CG3481-PH | 771 | Adh-RH | 1..614 | 17..630 | 3070 | 100 | Plus |
CG3481-PF | 771 | Adh-RF | 1..614 | 17..630 | 3070 | 100 | Plus |
CG3481-PE | 771 | Adh-RE | 1..614 | 17..630 | 3070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adhr-RB | 2024 | CG3484-RB | 72..686 | 16..630 | 3075 | 100 | Plus |
Adhr-RA | 2080 | CG3484-RA | 128..742 | 16..630 | 3075 | 100 | Plus |
Adh-RE | 1001 | CG3481-RE | 72..686 | 16..630 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14616501..14616907 | 114..520 | 2035 | 100 | Plus |
2L | 23513712 | 2L | 14616977..14617087 | 520..630 | 555 | 100 | Plus |
2L | 23513712 | 2L | 14616338..14616437 | 16..115 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:31:36 has no hits.
BO16418.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:58 Download gff for
BO16418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3481-PE | 1..614 | 17..630 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:17:26 Download gff for
BO16418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adh-RH | 66..686 | 10..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:37 Download gff for
BO16418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adh-RE | 66..686 | 10..630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:37 Download gff for
BO16418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14616332..14616437 | 10..115 | 98 | -> | Plus |
2L | 14616503..14616907 | 116..520 | 100 | -> | Plus |
2L | 14616978..14617087 | 521..630 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:17:26 Download gff for
BO16418.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14616332..14616437 | 10..115 | 98 | -> | Plus |
arm_2L | 14616503..14616907 | 116..520 | 100 | -> | Plus |
arm_2L | 14616978..14617087 | 521..630 | 100 | | Plus |
BO16418.complete Sequence
802 bp assembled on 2006-10-11
GenBank Submission: FJ633823
> BO16418.complete
GAAGTTATCAGTCGACATGTCGTTTACTTTGACCAACAAGAACGTGATTT
TCGTTGCCGGTCTGGGAGGCATTGGTCTGGACACCAGCAAGGAGCTGCTC
AAGCGCGATCTGAAGAACCTGGTGATCCTCGACCGCATTGAGAACCCGGC
TGCCATTGCCGAGCTGAAGGCAATCAATCCAAAGGTGACCGTCACCTTCT
ACCCCTATGATGTGACCGTGCCCATTGCCGAGACCACCAAGCTGCTGAAG
ACCATCTTCGCCCAGCTGAAGACCGTCGATGTCCTGATCAACGGAGCTGG
TATCCTGGACGATCACCAGATCGAGCGCACCATTGCCGTCAACTACACTG
GCCTGGTCAACACCACGACGGCCATTCTGGACTTCTGGGACAAGCGCAAG
GGCGGTCCCGGTGGTATCATCTGCAACATTGGATCCGTCACTGGATTCAA
TGCCATCTACCAGGTGCCCGTCTACTCCGGCACCAAGGCCGCCGTGGTCA
ACTTCACCAGCTCCCTGGCGAAACTGGCCCCCATTACCGGCGTGACGGCT
TACACTGTGAACCCCGGCATCACCCGCACCACCCTGGTGCACACGTTCAA
CTCCTGGTTGGATGTTGAGCCTCAGGTTGCCGAGAAGCTCCTGGCTCATC
CCACCCAGCCCTCGTTGGCCTGCGCCGAGAACTTCGTCAAGGCTATCGAG
CTGAACCAGAACGGAGCCATCTGGAAACTGGACTTGGGCACCCTGGAGGC
CATCCAGTGGACCAAGCACTGGGACTCCGGCATCGCAAGCTTTCTAGACC
AT
BO16418.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:53:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adh-RE | 771 | CG3481-PE | 1..768 | 17..784 | 3840 | 100 | Plus |
Adh-RF | 771 | CG3481-PF | 1..768 | 17..784 | 3840 | 100 | Plus |
Adh-RH | 771 | CG3481-PH | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adhr-RB | 2024 | CG3484-RB | 72..840 | 16..784 | 3845 | 100 | Plus |
Adhr-RA | 2080 | CG3484-RA | 128..896 | 16..784 | 3845 | 100 | Plus |
Adh-RE | 1001 | CG3481-RE | 72..840 | 16..784 | 3845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:53:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 14616501..14616907 | 114..520 | 2035 | 100 | Plus |
2L | 23513712 | 2L | 14616977..14617241 | 520..784 | 1325 | 100 | Plus |
2L | 23513712 | 2L | 14616338..14616437 | 16..115 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:53:08 has no hits.
BO16418.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:08 Download gff for
BO16418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adh-RH | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:34 Download gff for
BO16418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adh-RH | 64..842 | 10..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:34:19 Download gff for
BO16418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adh-RH | 73..840 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:08 Download gff for
BO16418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adh-RH | 64..842 | 10..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:28:07 Download gff for
BO16418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Adh-RE | 73..840 | 17..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:28:07 Download gff for
BO16418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 14616503..14616907 | 116..520 | 100 | -> | Plus |
2L | 14616978..14617241 | 521..786 | 99 | | Plus |
2L | 14616339..14616437 | 17..115 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:34:19 Download gff for
BO16418.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 14616339..14616437 | 17..115 | 100 | -> | Plus |
arm_2L | 14616503..14616907 | 116..520 | 100 | -> | Plus |
arm_2L | 14616978..14617241 | 521..786 | 99 | | Plus |
BO16418.pep Sequence
Translation from 16 to 802
> BO16418.pep
MSFTLTNKNVIFVAGLGGIGLDTSKELLKRDLKNLVILDRIENPAAIAEL
KAINPKVTVTFYPYDVTVPIAETTKLLKTIFAQLKTVDVLINGAGILDDH
QIERTIAVNYTGLVNTTTAILDFWDKRKGGPGGIICNIGSVTGFNAIYQV
PVYSGTKAAVVNFTSSLAKLAPITGVTAYTVNPGITRTTLVHTFNSWLDV
EPQVAEKLLAHPTQPSLACAENFVKAIELNQNGAIWKLDLGTLEAIQWTK
HWDSGIASFLDH
BO16418.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Adh-PE | 256 | CG3481-PE | 1..256 | 1..256 | 1316 | 100 | Plus |
Adh-PF | 256 | CG3481-PF | 1..256 | 1..256 | 1316 | 100 | Plus |
Adh-PH | 256 | CG3481-PH | 1..256 | 1..256 | 1316 | 100 | Plus |
Adh-PI | 256 | CG3481-PI | 1..256 | 1..256 | 1316 | 100 | Plus |
Adh-PC | 256 | CG3481-PC | 1..256 | 1..256 | 1316 | 100 | Plus |