Clone BO16419 Report

Search the DGRC for BO16419

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:19
Vector:pDNR-Dual
Associated Gene/Transcriptkoko-RB
Protein status:BO16419.pep: validated not full length
Sequenced Size:811

Clone Sequence Records

BO16419.3prime Sequence

652 bp (642 high quality bases) assembled on 2006-10-13

> BO16419.3prime
ATGGTCTAGAAAGCTTGCGGTGGCATTCAGGAAGCCCTCGTTCTTGTAGA
CCTCGATCACGTTCTCGATGATCTCCCACTGGTTCTCTCGGGTGAAGTCC
TTGACCAAGGGCTTGTACCACATGGCGGATTCGTCGGACTCGTCGGTTAG
CGGCACCTGGATGCCGTAGGTCTGGAGGGCCAGCGACAGGCACCCAATGG
CCACATGGGTGGGCTTGTACTTGAGGATATTGGCGCTGTGGTGAAAGTCT
TGCAGATACGAGGCGGCTGCCTTGGCAATGGGCACCGAGTTCCACACCTC
AGTGCCCACCCAGTCTTGTAGGGTCTTCATGTAGTGGAGTAAGTACTTGT
GGGCCAGATCTATGTTGAGATCGAAGCACAGGGTGCGCGTGATGAGCAGC
TCAGCCTGGACAATGGCATCCCGCATCGACCAGTACTCATCGTTCAGGTC
GACTGGATCATTGCCCCGGTTAAGGGTGCAGTATGCCACGTTGATGACAT
CGCGTATCTTGACACTTTCGTCTTCCTTAATTTTGCCAGCCAAGTACAGC
GAGCCCGCGGCAATGAGGAACTCATCGTAGTCGCTGGCCTTGACCTCGCG
GAAGAAGCGATGGAACACTATGGCCGCACAGGCCGCCGTCAGCGGGTTCA
TT

BO16419.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG31232-PE 780 CG31232-RE 144..777 652..19 3145 99.8 Minus
CG31232-PB 780 CG31232-RB 144..777 652..19 3145 99.8 Minus
CG31232-PA 1302 CG31232-RA 666..1299 652..19 3145 99.8 Minus
CG31232-PC 780 CG31232-RC 144..777 652..19 3145 99.8 Minus
CG31232-PD 780 CG31232-RD 144..777 652..19 3145 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
koko-RE 1122 CG44010-RE 205..838 652..19 3155 99.8 Minus
koko-RD 1177 CG44010-RD 260..893 652..19 3155 99.8 Minus
koko-RC 1247 CG44010-RC 330..963 652..19 3155 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18403894..18404442 567..19 2745 100 Minus
3R 32079331 3R 18403749..18403833 652..568 410 98.8 Minus
Blast to na_te.dros performed on 2015-02-08 11:43:01 has no hits.

BO16419.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:58 Download gff for BO16419.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31232-PD 144..780 15..652 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:22 Download gff for BO16419.3prime
Subject Subject Range Query Range Percent Splice Strand
koko-RC 330..966 15..652 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:42 Download gff for BO16419.3prime
Subject Subject Range Query Range Percent Splice Strand
koko-RC 330..966 15..652 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:42 Download gff for BO16419.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18403749..18403833 568..652 98 -> Minus
3R 18403894..18404441 20..567 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:22 Download gff for BO16419.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14229471..14229555 568..652 98 -> Minus
arm_3R 14229616..14230163 20..567 100 <- Minus

BO16419.5prime Sequence

732 bp (677 high quality bases) assembled on 2006-10-13

> BO16419.5prime
GAAGTTATCAGTCGACATGAAAAACGTTTTGGATGTCATGTCGATGCAGC
AGCACGTGGAGTTGAACAAGGCGCAGACCATGAAGCCCATCGACTATCGC
AAAATGAACAAACCCGGCGTGGTGCCGATGTACATCTTTGAGTGCGCTGC
CAAGTTGAAAATGAAACCGCTGACGGCGGCCTGTGCGGCCATAGTGTTCC
ATCGCTTCTTCCGCGAGGTCAAGGCCAGCGACTACGATGAGTTCCTCATT
GCCGCGGGCTCGCTGTACTTGGCTGGCAAAATTAAGGAAGACGAAAGTGT
CAAGATACGCGATGTCATCAACGTGGCATACTGCACCCTTAACCGGGGCA
ATGATCCAGTCGACCTGAACGATGAGTACTGGTCGATGCGGGATGCCATT
GTCCAGGCTGAGCTGCTCATCACGCGCACCCTGTGCTTCGATCTCAACAT
AGATCTGGCCCACAAGTACTTACTCCACTACATGAAGACCCTACAAGACT
GGGTGGGCACTGAGGTGTGGAACTCGGTGCCCATTGCCAAGGCAGCCGCC
TCGTATCTGCAAGACTTTCACCACAGCGCCAATATCCTCAAGTACAAGCC
CACCCATGTGGCCATTGGGTGCCTGTCGCTGGCCCTCCAGACCTACGGCA
TCCAGGTGCCGCTAACCGACGAGTCCGACGAATCCGCCATGTGGTACAAG
CCCTTGGTCAAGGACTTCACCCGAGAGAACCA

BO16419.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31232-PA 1302 CG31232-RA 522..1238 16..732 3585 100 Plus
CG31232-PE 780 CG31232-RE 1..716 17..732 3580 100 Plus
CG31232-PB 780 CG31232-RB 1..716 17..732 3580 100 Plus
CG31232-PC 780 CG31232-RC 1..716 17..732 3580 100 Plus
CG31232-PD 780 CG31232-RD 1..716 17..732 3580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
koko-RE 1122 CG44010-RE 61..777 16..732 3585 100 Plus
koko-RD 1177 CG44010-RD 116..832 16..732 3585 100 Plus
koko-RC 1247 CG44010-RC 186..902 16..732 3585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18403894..18404381 245..732 2440 100 Plus
3R 32079331 3R 18403688..18403833 99..244 730 100 Plus
3R 32079331 3R 18403539..18403622 16..99 420 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:32:43 has no hits.

BO16419.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:00 Download gff for BO16419.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31232-PA 514..1237 10..731 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:45 Download gff for BO16419.5prime
Subject Subject Range Query Range Percent Splice Strand
koko-RC 178..901 10..731 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:19 Download gff for BO16419.5prime
Subject Subject Range Query Range Percent Splice Strand
koko-RC 178..901 10..731 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:19 Download gff for BO16419.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18403531..18403622 10..99 96 -> Plus
3R 18403689..18403833 100..244 100 -> Plus
3R 18403894..18404380 245..731 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:45 Download gff for BO16419.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14229253..14229344 10..99 96 -> Plus
arm_3R 14229411..14229555 100..244 100 -> Plus
arm_3R 14229616..14230102 245..731 100   Plus

BO16419.complete Sequence

811 bp assembled on 2006-10-11

GenBank Submission: FJ633824

> BO16419.complete
GAAGTTATCAGTCGACATGAAAAACGTTTTGGATGTCATGTCGATGCAGC
AGCACGTGGAGTTGAACAAGGCGCAGACCATGAAGCCCATCGACTATCGC
AAAATGAACAAACCCGGCGTGGTGCCGATGTACATCTTTGAGTGCGCTGC
CAAGTTGAAAATGAAACCGCTGACGGCGGCCTGTGCGGCCATAGTGTTCC
ATCGCTTCTTCCGCGAGGTCAAGGCCAGCGACTACGATGAGTTCCTCATT
GCCGCGGGCTCGCTGTACTTGGCTGGCAAAATTAAGGAAGACGAAAGTGT
CAAGATACGCGATGTCATCAACGTGGCATACTGCACCCTTAACCGGGGCA
ATGATCCAGTCGACCTGAACGATGAGTACTGGTCGATGCGGGATGCCATT
GTCCAGGCTGAGCTGCTCATCACGCGCACCCTGTGCTTCGATCTCAACAT
AGATCTGGCCCACAAGTACTTACTCCACTACATGAAGACCCTACAAGACT
GGGTGGGCACTGAGGTGTGGAACTCGGTGCCCATTGCCAAGGCAGCCGCC
TCGTATCTGCAAGACTTTCACCACAGCGCCAATATCCTCAAGTACAAGCC
CACCCATGTGGCCATTGGGTGCCTGTCGCTGGCCCTCCAGACCTACGGCA
TCCAGGTGCCGCTAACCGACGAGTCCGACGAATCCGCCATGTGGTACAAG
CCCTTGGTCAAGGACTTCACCCGAGAGAACCAGTGGGAGATCATCGAGAA
CGTGATCGAGGTCTACAAGAACGAGGGCTTCCTGAATGCCACCGCAAGCT
TTCTAGACCAT

BO16419.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
koko-RE 780 CG44010-PE 1..777 17..793 3885 100 Plus
koko-RD 780 CG44010-PD 1..777 17..793 3885 100 Plus
koko-RC 780 CG44010-PC 1..777 17..793 3885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
koko-RE 1122 CG44010-RE 61..838 16..793 3890 100 Plus
koko-RD 1177 CG44010-RD 116..893 16..793 3890 100 Plus
koko-RC 1247 CG44010-RC 186..963 16..793 3890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:54:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18403894..18404442 245..793 2745 100 Plus
3R 32079331 3R 18403688..18403833 99..244 730 100 Plus
3R 32079331 3R 18403539..18403622 16..99 420 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:54:14 has no hits.

BO16419.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:09 Download gff for BO16419.complete
Subject Subject Range Query Range Percent Splice Strand
koko-RA 514..1302 10..797 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:36 Download gff for BO16419.complete
Subject Subject Range Query Range Percent Splice Strand
koko-RA 822..1610 10..797 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:04 Download gff for BO16419.complete
Subject Subject Range Query Range Percent Splice Strand
koko-RC 187..963 17..795 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:10 Download gff for BO16419.complete
Subject Subject Range Query Range Percent Splice Strand
koko-RA 822..1610 10..797 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:35 Download gff for BO16419.complete
Subject Subject Range Query Range Percent Splice Strand
koko-RC 187..963 17..795 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:35 Download gff for BO16419.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18403540..18403622 17..99 100 -> Plus
3R 18403689..18403833 100..244 100 -> Plus
3R 18403894..18404442 245..795 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:04 Download gff for BO16419.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14229262..14229344 17..99 100 -> Plus
arm_3R 14229411..14229555 100..244 100 -> Plus
arm_3R 14229616..14230164 245..795 99   Plus

BO16419.pep Sequence

Translation from 16 to 811

> BO16419.pep
MKNVLDVMSMQQHVELNKAQTMKPIDYRKMNKPGVVPMYIFECAAKLKMK
PLTAACAAIVFHRFFREVKASDYDEFLIAAGSLYLAGKIKEDESVKIRDV
INVAYCTLNRGNDPVDLNDEYWSMRDAIVQAELLITRTLCFDLNIDLAHK
YLLHYMKTLQDWVGTEVWNSVPIAKAAASYLQDFHHSANILKYKPTHVAI
GCLSLALQTYGIQVPLTDESDESAMWYKPLVKDFTRENQWEIIENVIEVY
KNEGFLNATASFLDH

BO16419.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
koko-PE 259 CG44010-PE 1..259 1..259 1361 100 Plus
koko-PD 259 CG44010-PD 1..259 1..259 1361 100 Plus
koko-PC 259 CG44010-PC 1..259 1..259 1361 100 Plus
koko-PB 259 CG44010-PB 1..259 1..259 1361 100 Plus