Clone Sequence Records
BO16419.3prime Sequence
652 bp (642 high quality bases) assembled on 2006-10-13
> BO16419.3prime
ATGGTCTAGAAAGCTTGCGGTGGCATTCAGGAAGCCCTCGTTCTTGTAGA
CCTCGATCACGTTCTCGATGATCTCCCACTGGTTCTCTCGGGTGAAGTCC
TTGACCAAGGGCTTGTACCACATGGCGGATTCGTCGGACTCGTCGGTTAG
CGGCACCTGGATGCCGTAGGTCTGGAGGGCCAGCGACAGGCACCCAATGG
CCACATGGGTGGGCTTGTACTTGAGGATATTGGCGCTGTGGTGAAAGTCT
TGCAGATACGAGGCGGCTGCCTTGGCAATGGGCACCGAGTTCCACACCTC
AGTGCCCACCCAGTCTTGTAGGGTCTTCATGTAGTGGAGTAAGTACTTGT
GGGCCAGATCTATGTTGAGATCGAAGCACAGGGTGCGCGTGATGAGCAGC
TCAGCCTGGACAATGGCATCCCGCATCGACCAGTACTCATCGTTCAGGTC
GACTGGATCATTGCCCCGGTTAAGGGTGCAGTATGCCACGTTGATGACAT
CGCGTATCTTGACACTTTCGTCTTCCTTAATTTTGCCAGCCAAGTACAGC
GAGCCCGCGGCAATGAGGAACTCATCGTAGTCGCTGGCCTTGACCTCGCG
GAAGAAGCGATGGAACACTATGGCCGCACAGGCCGCCGTCAGCGGGTTCA
TT
BO16419.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31232-PE | 780 | CG31232-RE | 144..777 | 652..19 | 3145 | 99.8 | Minus |
CG31232-PB | 780 | CG31232-RB | 144..777 | 652..19 | 3145 | 99.8 | Minus |
CG31232-PA | 1302 | CG31232-RA | 666..1299 | 652..19 | 3145 | 99.8 | Minus |
CG31232-PC | 780 | CG31232-RC | 144..777 | 652..19 | 3145 | 99.8 | Minus |
CG31232-PD | 780 | CG31232-RD | 144..777 | 652..19 | 3145 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
koko-RE | 1122 | CG44010-RE | 205..838 | 652..19 | 3155 | 99.8 | Minus |
koko-RD | 1177 | CG44010-RD | 260..893 | 652..19 | 3155 | 99.8 | Minus |
koko-RC | 1247 | CG44010-RC | 330..963 | 652..19 | 3155 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:42:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18403894..18404442 | 567..19 | 2745 | 100 | Minus |
3R | 32079331 | 3R | 18403749..18403833 | 652..568 | 410 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:43:01 has no hits.
BO16419.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:50:58 Download gff for
BO16419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31232-PD | 144..780 | 15..652 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:36:22 Download gff for
BO16419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
koko-RC | 330..966 | 15..652 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:41:42 Download gff for
BO16419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
koko-RC | 330..966 | 15..652 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:41:42 Download gff for
BO16419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18403749..18403833 | 568..652 | 98 | -> | Minus |
3R | 18403894..18404441 | 20..567 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:36:22 Download gff for
BO16419.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14229471..14229555 | 568..652 | 98 | -> | Minus |
arm_3R | 14229616..14230163 | 20..567 | 100 | <- | Minus |
BO16419.5prime Sequence
732 bp (677 high quality bases) assembled on 2006-10-13
> BO16419.5prime
GAAGTTATCAGTCGACATGAAAAACGTTTTGGATGTCATGTCGATGCAGC
AGCACGTGGAGTTGAACAAGGCGCAGACCATGAAGCCCATCGACTATCGC
AAAATGAACAAACCCGGCGTGGTGCCGATGTACATCTTTGAGTGCGCTGC
CAAGTTGAAAATGAAACCGCTGACGGCGGCCTGTGCGGCCATAGTGTTCC
ATCGCTTCTTCCGCGAGGTCAAGGCCAGCGACTACGATGAGTTCCTCATT
GCCGCGGGCTCGCTGTACTTGGCTGGCAAAATTAAGGAAGACGAAAGTGT
CAAGATACGCGATGTCATCAACGTGGCATACTGCACCCTTAACCGGGGCA
ATGATCCAGTCGACCTGAACGATGAGTACTGGTCGATGCGGGATGCCATT
GTCCAGGCTGAGCTGCTCATCACGCGCACCCTGTGCTTCGATCTCAACAT
AGATCTGGCCCACAAGTACTTACTCCACTACATGAAGACCCTACAAGACT
GGGTGGGCACTGAGGTGTGGAACTCGGTGCCCATTGCCAAGGCAGCCGCC
TCGTATCTGCAAGACTTTCACCACAGCGCCAATATCCTCAAGTACAAGCC
CACCCATGTGGCCATTGGGTGCCTGTCGCTGGCCCTCCAGACCTACGGCA
TCCAGGTGCCGCTAACCGACGAGTCCGACGAATCCGCCATGTGGTACAAG
CCCTTGGTCAAGGACTTCACCCGAGAGAACCA
BO16419.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31232-PA | 1302 | CG31232-RA | 522..1238 | 16..732 | 3585 | 100 | Plus |
CG31232-PE | 780 | CG31232-RE | 1..716 | 17..732 | 3580 | 100 | Plus |
CG31232-PB | 780 | CG31232-RB | 1..716 | 17..732 | 3580 | 100 | Plus |
CG31232-PC | 780 | CG31232-RC | 1..716 | 17..732 | 3580 | 100 | Plus |
CG31232-PD | 780 | CG31232-RD | 1..716 | 17..732 | 3580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:32:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
koko-RE | 1122 | CG44010-RE | 61..777 | 16..732 | 3585 | 100 | Plus |
koko-RD | 1177 | CG44010-RD | 116..832 | 16..732 | 3585 | 100 | Plus |
koko-RC | 1247 | CG44010-RC | 186..902 | 16..732 | 3585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18403894..18404381 | 245..732 | 2440 | 100 | Plus |
3R | 32079331 | 3R | 18403688..18403833 | 99..244 | 730 | 100 | Plus |
3R | 32079331 | 3R | 18403539..18403622 | 16..99 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:32:43 has no hits.
BO16419.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:00 Download gff for
BO16419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31232-PA | 514..1237 | 10..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:45 Download gff for
BO16419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
koko-RC | 178..901 | 10..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:19 Download gff for
BO16419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
koko-RC | 178..901 | 10..731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:19 Download gff for
BO16419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18403531..18403622 | 10..99 | 96 | -> | Plus |
3R | 18403689..18403833 | 100..244 | 100 | -> | Plus |
3R | 18403894..18404380 | 245..731 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:45 Download gff for
BO16419.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14229253..14229344 | 10..99 | 96 | -> | Plus |
arm_3R | 14229411..14229555 | 100..244 | 100 | -> | Plus |
arm_3R | 14229616..14230102 | 245..731 | 100 | | Plus |
BO16419.complete Sequence
811 bp assembled on 2006-10-11
GenBank Submission: FJ633824
> BO16419.complete
GAAGTTATCAGTCGACATGAAAAACGTTTTGGATGTCATGTCGATGCAGC
AGCACGTGGAGTTGAACAAGGCGCAGACCATGAAGCCCATCGACTATCGC
AAAATGAACAAACCCGGCGTGGTGCCGATGTACATCTTTGAGTGCGCTGC
CAAGTTGAAAATGAAACCGCTGACGGCGGCCTGTGCGGCCATAGTGTTCC
ATCGCTTCTTCCGCGAGGTCAAGGCCAGCGACTACGATGAGTTCCTCATT
GCCGCGGGCTCGCTGTACTTGGCTGGCAAAATTAAGGAAGACGAAAGTGT
CAAGATACGCGATGTCATCAACGTGGCATACTGCACCCTTAACCGGGGCA
ATGATCCAGTCGACCTGAACGATGAGTACTGGTCGATGCGGGATGCCATT
GTCCAGGCTGAGCTGCTCATCACGCGCACCCTGTGCTTCGATCTCAACAT
AGATCTGGCCCACAAGTACTTACTCCACTACATGAAGACCCTACAAGACT
GGGTGGGCACTGAGGTGTGGAACTCGGTGCCCATTGCCAAGGCAGCCGCC
TCGTATCTGCAAGACTTTCACCACAGCGCCAATATCCTCAAGTACAAGCC
CACCCATGTGGCCATTGGGTGCCTGTCGCTGGCCCTCCAGACCTACGGCA
TCCAGGTGCCGCTAACCGACGAGTCCGACGAATCCGCCATGTGGTACAAG
CCCTTGGTCAAGGACTTCACCCGAGAGAACCAGTGGGAGATCATCGAGAA
CGTGATCGAGGTCTACAAGAACGAGGGCTTCCTGAATGCCACCGCAAGCT
TTCTAGACCAT
BO16419.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:54:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
koko-RE | 780 | CG44010-PE | 1..777 | 17..793 | 3885 | 100 | Plus |
koko-RD | 780 | CG44010-PD | 1..777 | 17..793 | 3885 | 100 | Plus |
koko-RC | 780 | CG44010-PC | 1..777 | 17..793 | 3885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:54:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
koko-RE | 1122 | CG44010-RE | 61..838 | 16..793 | 3890 | 100 | Plus |
koko-RD | 1177 | CG44010-RD | 116..893 | 16..793 | 3890 | 100 | Plus |
koko-RC | 1247 | CG44010-RC | 186..963 | 16..793 | 3890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:54:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18403894..18404442 | 245..793 | 2745 | 100 | Plus |
3R | 32079331 | 3R | 18403688..18403833 | 99..244 | 730 | 100 | Plus |
3R | 32079331 | 3R | 18403539..18403622 | 16..99 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:54:14 has no hits.
BO16419.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:28:09 Download gff for
BO16419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
koko-RA | 514..1302 | 10..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:36 Download gff for
BO16419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
koko-RA | 822..1610 | 10..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:41:04 Download gff for
BO16419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
koko-RC | 187..963 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:28:10 Download gff for
BO16419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
koko-RA | 822..1610 | 10..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:35 Download gff for
BO16419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
koko-RC | 187..963 | 17..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:35 Download gff for
BO16419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18403540..18403622 | 17..99 | 100 | -> | Plus |
3R | 18403689..18403833 | 100..244 | 100 | -> | Plus |
3R | 18403894..18404442 | 245..795 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:41:04 Download gff for
BO16419.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14229262..14229344 | 17..99 | 100 | -> | Plus |
arm_3R | 14229411..14229555 | 100..244 | 100 | -> | Plus |
arm_3R | 14229616..14230164 | 245..795 | 99 | | Plus |
BO16419.pep Sequence
Translation from 16 to 811
> BO16419.pep
MKNVLDVMSMQQHVELNKAQTMKPIDYRKMNKPGVVPMYIFECAAKLKMK
PLTAACAAIVFHRFFREVKASDYDEFLIAAGSLYLAGKIKEDESVKIRDV
INVAYCTLNRGNDPVDLNDEYWSMRDAIVQAELLITRTLCFDLNIDLAHK
YLLHYMKTLQDWVGTEVWNSVPIAKAAASYLQDFHHSANILKYKPTHVAI
GCLSLALQTYGIQVPLTDESDESAMWYKPLVKDFTRENQWEIIENVIEVY
KNEGFLNATASFLDH
BO16419.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
koko-PE | 259 | CG44010-PE | 1..259 | 1..259 | 1361 | 100 | Plus |
koko-PD | 259 | CG44010-PD | 1..259 | 1..259 | 1361 | 100 | Plus |
koko-PC | 259 | CG44010-PC | 1..259 | 1..259 | 1361 | 100 | Plus |
koko-PB | 259 | CG44010-PB | 1..259 | 1..259 | 1361 | 100 | Plus |