Clone Sequence Records
BO16424.3prime Sequence
663 bp (565 high quality bases) assembled on 2006-10-13
> BO16424.3prime
ATGGTCTAGAAAGCTTGCATGGCTAACAGTTTGCTTATTCAGATAAGCCA
TTAAGGCCTGGAGCCGCTTCTTGATGTTCTTCTGATCGTCCAGAGTGCAG
CCAAGCAAAACGCTCTCGAACTTCTTGTCGACCGGCCCAACATCGGCCTC
GGGCACGGTGTCCATGTGTCCGGATGGATCCATTGAGCTGCTGCAGCAGG
CGTTTAAGTAAAACTGGCATCGTTGGCGTCCGATCACGGGATCACCCATC
TTGATCATGCTGTCAATCAATACATTTATCTGGCTAAGGGAATCCTCCTG
AGAGTTGTCCCGAACAGTGCGCACACGCAGCTCCACGGTGGCCAAGCGAG
AGCTCACCCGTTGTAGGTACAAAATGATCTCCTCTCGTTCAGCTTCGCTC
ATGTTCTGCATCATTTCGTTGCTCTTGATCAGATCCATGGACATCAGAAG
GTAGTCTTTCTTCTCCTGCAGGTTGAGTGCATCCTTGCGCAGCTTCTCCA
CACGTGCATCCAAACTATCCAGTATGGTGACAAATCTCTCGCTGGCGTTA
AATGGTCTATCTGAATGTGGGCTGTGAAAAGAGCCTTCGGTCCAGGAGGC
GTCAAAGCCATCATTGGACTCGGGCGTATCGGGCTCTATATCTTCCGGAT
ATCGGGTTATTAT
BO16424.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PB | 747 | CG7945-RB | 100..744 | 663..19 | 3150 | 99.5 | Minus |
CG7945-PA | 789 | CG7945-RA | 247..786 | 558..19 | 2700 | 100 | Minus |
CG7945-PC | 429 | CG7945-RC | 1..426 | 444..19 | 2130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RB | 1275 | CG7945-RB | 520..1164 | 663..19 | 3180 | 99.5 | Minus |
CG7945-RA | 1451 | CG7945-RA | 801..1340 | 558..19 | 2700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15521822..15522197 | 19..394 | 1880 | 100 | Plus |
3L | 28110227 | 3L | 15522360..15522504 | 393..537 | 725 | 100 | Plus |
3L | 28110227 | 3L | 15523512..15523618 | 557..663 | 490 | 97.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:39:37 has no hits.
BO16424.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:03 Download gff for
BO16424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PB | 100..747 | 15..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:50 Download gff for
BO16424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 520..1169 | 11..663 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:46 Download gff for
BO16424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 520..1169 | 11..663 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:46 Download gff for
BO16424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15521817..15522195 | 11..392 | 98 | <- | Plus |
3L | 15522360..15522502 | 393..535 | 100 | <- | Plus |
3L | 15522560..15522580 | 536..556 | 100 | <- | Plus |
3L | 15523512..15523618 | 557..663 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:50 Download gff for
BO16424.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15516612..15516718 | 557..663 | 97 | | Plus |
arm_3L | 15514917..15515295 | 11..392 | 98 | <- | Plus |
arm_3L | 15515460..15515602 | 393..535 | 100 | <- | Plus |
arm_3L | 15515660..15515680 | 536..556 | 100 | <- | Plus |
BO16424.5prime Sequence
642 bp (570 high quality bases) assembled on 2006-10-13
> BO16424.5prime
GAAGTTATCAGTCGACATGTTTGAGAATTTTCGAGGTATTTTTCGGAAAC
GGCGTCGCTGCGAGTCGGACACAACACCGCCGCCACCGCCGCCGCAACCC
GCCCAGGAGGCGGAGATAATAAACCGATATCCGGAAGATATAGAAGCCGA
TACGCCCGAGTCCAATGATGGCTTTGACGCCTCCTGGACCGAAGGCTCTT
TTCACAGCCCACATTCAGATAGACCATTTAACGCCAGCGAGAGATTTGTC
ACCATACTGGATAGTTTGGATGCACGTGTGGAGAAGCTGCGCAAGGATGC
ACTCAACCTGCAGGAGAAGAAAGACTACCTTCTGATGTCCATGGATCTGA
TCAAGAGCAACGAAATGATGCAGAACATGAGCGAAGCTGAACGAGAGGAG
ATCATTTTGTACCTACAACGGGTGAGCTCTCGCTTGGCCACCGTGGAGCT
GCGTGTGCGCACTGTTCGGGACAACTCTCAGGAGGATTCCCTTAGCCAGA
TAAATGTATTGATTGACAGCATGATCAAGATGGGTGATCCCGTGATCGGA
CGCCAACGATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGCTCAATGGA
TCCATCCGGACACATGGACACCGTGCCCGAGGCCGATGTTGG
BO16424.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PB | 747 | CG7945-RB | 1..626 | 17..642 | 3130 | 100 | Plus |
CG7945-PA | 789 | CG7945-RA | 247..668 | 221..642 | 2110 | 100 | Plus |
CG7945-PC | 429 | CG7945-RC | 1..308 | 335..642 | 1540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RB | 1275 | CG7945-RB | 421..1046 | 17..642 | 3130 | 100 | Plus |
CG7945-RA | 1451 | CG7945-RA | 801..1222 | 221..642 | 2110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:49:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15521940..15522197 | 642..385 | 1290 | 100 | Minus |
3L | 28110227 | 3L | 15523512..15523717 | 222..17 | 1030 | 100 | Minus |
3L | 28110227 | 3L | 15522360..15522504 | 386..242 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:49:18 has no hits.
BO16424.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:04 Download gff for
BO16424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-PB | 1..626 | 17..642 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:52 Download gff for
BO16424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 409..1046 | 5..642 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:32 Download gff for
BO16424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 409..1046 | 5..642 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:32 Download gff for
BO16424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15521940..15522195 | 387..642 | 100 | <- | Minus |
3L | 15522360..15522502 | 244..386 | 100 | <- | Minus |
3L | 15522560..15522580 | 223..243 | 100 | <- | Minus |
3L | 15523512..15523723 | 11..222 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:52 Download gff for
BO16424.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15515040..15515295 | 387..642 | 100 | <- | Minus |
arm_3L | 15515460..15515602 | 244..386 | 100 | <- | Minus |
arm_3L | 15515660..15515680 | 223..243 | 100 | <- | Minus |
arm_3L | 15516612..15516823 | 11..222 | 98 | <- | Minus |
BO16424.complete Sequence
778 bp assembled on 2006-10-11
GenBank Submission: FJ633825
> BO16424.complete
GAAGTTATCAGTCGACATGTTTGAGAATTTTCGAGGTATTTTTCGGAAAC
GGCGTCGCTGCGAGTCGGACACAACACCGCCGCCACCGCCGCCGCAACCC
GCCCAGGAGGCGGAGATAATAAACCGATATCCGGAAGATATAGAAGCCGA
TACGCCCGAGTCCAATGATGGCTTTGACGCCTCCTGGACCGAAGGCTCTT
TTCACAGCCCACATTCAGATAGACCATTTAACGCCAGCGAGAGATTTGTC
ACCATACTGGATAGTTTGGATGCACGTGTGGAGAAGCTGCGCAAGGATGC
ACTCAACCTGCAGGAGAAGAAAGACTACCTTCTGATGTCCATGGATCTGA
TCAAGAGCAACGAAATGATGCAGAACATGAGCGAAGCTGAACGAGAGGAG
ATCATTTTGTACCTACAACGGGTGAGCTCTCGCTTGGCCACCGTGGAGCT
GCGTGTGCGCACTGTTCGGGACAACTCTCAGGAGGATTCCCTTAGCCAGA
TAAATGTATTGATTGACAGCATGATCAAGATGGGTGATCCCGTGATCGGA
CGCCAACGATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGCTCAATGGA
TCCATCCGGACACATGGACACCGTGCCCGAGGCCGATGTTGGGCCGGTCG
ACAAGAAGTTCGAGAGCGTTTTGCTTGGCTGCACTCTGGACGATCAGAAG
AACATCAAGAAGCGGCTCCAGGCCTTAATGGCTTATCTGAATAAGCAAAC
TGTTAGCCATGCAAGCTTTCTAGACCAT
BO16424.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:36:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RB | 747 | CG7945-PB | 1..744 | 17..760 | 3720 | 100 | Plus |
CG7945-RA | 789 | CG7945-PA | 247..786 | 221..760 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-RB | 1275 | CG7945-RB | 421..1164 | 17..760 | 3720 | 100 | Plus |
CG7945-RA | 1451 | CG7945-RA | 801..1340 | 221..760 | 2700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15521822..15522197 | 760..385 | 1880 | 100 | Minus |
3L | 28110227 | 3L | 15523512..15523717 | 222..17 | 1030 | 100 | Minus |
3L | 28110227 | 3L | 15522360..15522504 | 386..242 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:36:39 has no hits.
BO16424.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:41 Download gff for
BO16424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 1..747 | 17..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:37 Download gff for
BO16424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 371..1131 | 5..768 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:20 Download gff for
BO16424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 427..1164 | 23..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:41 Download gff for
BO16424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 371..1131 | 5..768 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:48 Download gff for
BO16424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7945-RB | 427..1164 | 23..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:48 Download gff for
BO16424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15521820..15522195 | 387..762 | 99 | <- | Minus |
3L | 15522360..15522502 | 244..386 | 100 | <- | Minus |
3L | 15522560..15522580 | 223..243 | 100 | <- | Minus |
3L | 15523512..15523711 | 23..222 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:20 Download gff for
BO16424.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15515660..15515680 | 223..243 | 100 | <- | Minus |
arm_3L | 15516612..15516811 | 23..222 | 100 | | Minus |
arm_3L | 15514920..15515295 | 387..762 | 99 | <- | Minus |
arm_3L | 15515460..15515602 | 244..386 | 100 | <- | Minus |
BO16424.pep Sequence
Translation from 16 to 778
> BO16424.pep
MFENFRGIFRKRRRCESDTTPPPPPPQPAQEAEIINRYPEDIEADTPESN
DGFDASWTEGSFHSPHSDRPFNASERFVTILDSLDARVEKLRKDALNLQE
KKDYLLMSMDLIKSNEMMQNMSEAEREEIILYLQRVSSRLATVELRVRTV
RDNSQEDSLSQINVLIDSMIKMGDPVIGRQRCQFYLNACCSSSMDPSGHM
DTVPEADVGPVDKKFESVLLGCTLDDQKNIKKRLQALMAYLNKQTVSHAS
FLDH
BO16424.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7945-PB | 248 | CG7945-PB | 1..248 | 1..248 | 1285 | 100 | Plus |
CG7945-PA | 262 | CG7945-PA | 82..262 | 68..248 | 910 | 100 | Plus |