Clone BO16424 Report

Search the DGRC for BO16424

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG7945-RB
Protein status:BO16424.pep: validated full length
Sequenced Size:778

Clone Sequence Records

BO16424.3prime Sequence

663 bp (565 high quality bases) assembled on 2006-10-13

> BO16424.3prime
ATGGTCTAGAAAGCTTGCATGGCTAACAGTTTGCTTATTCAGATAAGCCA
TTAAGGCCTGGAGCCGCTTCTTGATGTTCTTCTGATCGTCCAGAGTGCAG
CCAAGCAAAACGCTCTCGAACTTCTTGTCGACCGGCCCAACATCGGCCTC
GGGCACGGTGTCCATGTGTCCGGATGGATCCATTGAGCTGCTGCAGCAGG
CGTTTAAGTAAAACTGGCATCGTTGGCGTCCGATCACGGGATCACCCATC
TTGATCATGCTGTCAATCAATACATTTATCTGGCTAAGGGAATCCTCCTG
AGAGTTGTCCCGAACAGTGCGCACACGCAGCTCCACGGTGGCCAAGCGAG
AGCTCACCCGTTGTAGGTACAAAATGATCTCCTCTCGTTCAGCTTCGCTC
ATGTTCTGCATCATTTCGTTGCTCTTGATCAGATCCATGGACATCAGAAG
GTAGTCTTTCTTCTCCTGCAGGTTGAGTGCATCCTTGCGCAGCTTCTCCA
CACGTGCATCCAAACTATCCAGTATGGTGACAAATCTCTCGCTGGCGTTA
AATGGTCTATCTGAATGTGGGCTGTGAAAAGAGCCTTCGGTCCAGGAGGC
GTCAAAGCCATCATTGGACTCGGGCGTATCGGGCTCTATATCTTCCGGAT
ATCGGGTTATTAT

BO16424.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PB 747 CG7945-RB 100..744 663..19 3150 99.5 Minus
CG7945-PA 789 CG7945-RA 247..786 558..19 2700 100 Minus
CG7945-PC 429 CG7945-RC 1..426 444..19 2130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RB 1275 CG7945-RB 520..1164 663..19 3180 99.5 Minus
CG7945-RA 1451 CG7945-RA 801..1340 558..19 2700 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15521822..15522197 19..394 1880 100 Plus
3L 28110227 3L 15522360..15522504 393..537 725 100 Plus
3L 28110227 3L 15523512..15523618 557..663 490 97.2 Plus
Blast to na_te.dros performed on 2015-02-12 17:39:37 has no hits.

BO16424.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:03 Download gff for BO16424.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PB 100..747 15..663 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:39:50 Download gff for BO16424.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 520..1169 11..663 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:46 Download gff for BO16424.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 520..1169 11..663 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:46 Download gff for BO16424.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15521817..15522195 11..392 98 <- Plus
3L 15522360..15522502 393..535 100 <- Plus
3L 15522560..15522580 536..556 100 <- Plus
3L 15523512..15523618 557..663 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:39:50 Download gff for BO16424.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15516612..15516718 557..663 97   Plus
arm_3L 15514917..15515295 11..392 98 <- Plus
arm_3L 15515460..15515602 393..535 100 <- Plus
arm_3L 15515660..15515680 536..556 100 <- Plus

BO16424.5prime Sequence

642 bp (570 high quality bases) assembled on 2006-10-13

> BO16424.5prime
GAAGTTATCAGTCGACATGTTTGAGAATTTTCGAGGTATTTTTCGGAAAC
GGCGTCGCTGCGAGTCGGACACAACACCGCCGCCACCGCCGCCGCAACCC
GCCCAGGAGGCGGAGATAATAAACCGATATCCGGAAGATATAGAAGCCGA
TACGCCCGAGTCCAATGATGGCTTTGACGCCTCCTGGACCGAAGGCTCTT
TTCACAGCCCACATTCAGATAGACCATTTAACGCCAGCGAGAGATTTGTC
ACCATACTGGATAGTTTGGATGCACGTGTGGAGAAGCTGCGCAAGGATGC
ACTCAACCTGCAGGAGAAGAAAGACTACCTTCTGATGTCCATGGATCTGA
TCAAGAGCAACGAAATGATGCAGAACATGAGCGAAGCTGAACGAGAGGAG
ATCATTTTGTACCTACAACGGGTGAGCTCTCGCTTGGCCACCGTGGAGCT
GCGTGTGCGCACTGTTCGGGACAACTCTCAGGAGGATTCCCTTAGCCAGA
TAAATGTATTGATTGACAGCATGATCAAGATGGGTGATCCCGTGATCGGA
CGCCAACGATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGCTCAATGGA
TCCATCCGGACACATGGACACCGTGCCCGAGGCCGATGTTGG

BO16424.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PB 747 CG7945-RB 1..626 17..642 3130 100 Plus
CG7945-PA 789 CG7945-RA 247..668 221..642 2110 100 Plus
CG7945-PC 429 CG7945-RC 1..308 335..642 1540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RB 1275 CG7945-RB 421..1046 17..642 3130 100 Plus
CG7945-RA 1451 CG7945-RA 801..1222 221..642 2110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15521940..15522197 642..385 1290 100 Minus
3L 28110227 3L 15523512..15523717 222..17 1030 100 Minus
3L 28110227 3L 15522360..15522504 386..242 725 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:49:18 has no hits.

BO16424.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:04 Download gff for BO16424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PB 1..626 17..642 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:39:52 Download gff for BO16424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 409..1046 5..642 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:32 Download gff for BO16424.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 409..1046 5..642 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:32 Download gff for BO16424.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15521940..15522195 387..642 100 <- Minus
3L 15522360..15522502 244..386 100 <- Minus
3L 15522560..15522580 223..243 100 <- Minus
3L 15523512..15523723 11..222 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:39:52 Download gff for BO16424.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15515040..15515295 387..642 100 <- Minus
arm_3L 15515460..15515602 244..386 100 <- Minus
arm_3L 15515660..15515680 223..243 100 <- Minus
arm_3L 15516612..15516823 11..222 98 <- Minus

BO16424.complete Sequence

778 bp assembled on 2006-10-11

GenBank Submission: FJ633825

> BO16424.complete
GAAGTTATCAGTCGACATGTTTGAGAATTTTCGAGGTATTTTTCGGAAAC
GGCGTCGCTGCGAGTCGGACACAACACCGCCGCCACCGCCGCCGCAACCC
GCCCAGGAGGCGGAGATAATAAACCGATATCCGGAAGATATAGAAGCCGA
TACGCCCGAGTCCAATGATGGCTTTGACGCCTCCTGGACCGAAGGCTCTT
TTCACAGCCCACATTCAGATAGACCATTTAACGCCAGCGAGAGATTTGTC
ACCATACTGGATAGTTTGGATGCACGTGTGGAGAAGCTGCGCAAGGATGC
ACTCAACCTGCAGGAGAAGAAAGACTACCTTCTGATGTCCATGGATCTGA
TCAAGAGCAACGAAATGATGCAGAACATGAGCGAAGCTGAACGAGAGGAG
ATCATTTTGTACCTACAACGGGTGAGCTCTCGCTTGGCCACCGTGGAGCT
GCGTGTGCGCACTGTTCGGGACAACTCTCAGGAGGATTCCCTTAGCCAGA
TAAATGTATTGATTGACAGCATGATCAAGATGGGTGATCCCGTGATCGGA
CGCCAACGATGCCAGTTTTACTTAAACGCCTGCTGCAGCAGCTCAATGGA
TCCATCCGGACACATGGACACCGTGCCCGAGGCCGATGTTGGGCCGGTCG
ACAAGAAGTTCGAGAGCGTTTTGCTTGGCTGCACTCTGGACGATCAGAAG
AACATCAAGAAGCGGCTCCAGGCCTTAATGGCTTATCTGAATAAGCAAAC
TGTTAGCCATGCAAGCTTTCTAGACCAT

BO16424.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RB 747 CG7945-PB 1..744 17..760 3720 100 Plus
CG7945-RA 789 CG7945-PA 247..786 221..760 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RB 1275 CG7945-RB 421..1164 17..760 3720 100 Plus
CG7945-RA 1451 CG7945-RA 801..1340 221..760 2700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15521822..15522197 760..385 1880 100 Minus
3L 28110227 3L 15523512..15523717 222..17 1030 100 Minus
3L 28110227 3L 15522360..15522504 386..242 725 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:36:39 has no hits.

BO16424.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:23:41 Download gff for BO16424.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 1..747 17..764 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:43:37 Download gff for BO16424.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 371..1131 5..768 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:20 Download gff for BO16424.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 427..1164 23..762 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:23:41 Download gff for BO16424.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 371..1131 5..768 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:16:48 Download gff for BO16424.complete
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 427..1164 23..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:16:48 Download gff for BO16424.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15521820..15522195 387..762 99 <- Minus
3L 15522360..15522502 244..386 100 <- Minus
3L 15522560..15522580 223..243 100 <- Minus
3L 15523512..15523711 23..222 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:20 Download gff for BO16424.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15515660..15515680 223..243 100 <- Minus
arm_3L 15516612..15516811 23..222 100   Minus
arm_3L 15514920..15515295 387..762 99 <- Minus
arm_3L 15515460..15515602 244..386 100 <- Minus

BO16424.pep Sequence

Translation from 16 to 778

> BO16424.pep
MFENFRGIFRKRRRCESDTTPPPPPPQPAQEAEIINRYPEDIEADTPESN
DGFDASWTEGSFHSPHSDRPFNASERFVTILDSLDARVEKLRKDALNLQE
KKDYLLMSMDLIKSNEMMQNMSEAEREEIILYLQRVSSRLATVELRVRTV
RDNSQEDSLSQINVLIDSMIKMGDPVIGRQRCQFYLNACCSSSMDPSGHM
DTVPEADVGPVDKKFESVLLGCTLDDQKNIKKRLQALMAYLNKQTVSHAS
FLDH

BO16424.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PB 248 CG7945-PB 1..248 1..248 1285 100 Plus
CG7945-PA 262 CG7945-PA 82..262 68..248 910 100 Plus