Clone Sequence Records
BO16425.3prime Sequence
380 bp (380 high quality bases) assembled on 2006-10-13
> BO16425.3prime
ATGGTCTAGAAAGCTTGCGACATCGGTCTCGGATCGTCGCCTCCGACCGG
GTCCTCCGGCAAAGTTGGCTGCAGCCAGACCCATGCGATGTTTCGCCTCC
TGGGTACCCGAATATCCCCGGGCCAAGCCAAAGTCCACGGTTCGTTTGGA
ATTCTCCAGATCGTTTCGAGCCCGTATGATGGTGCGTCCAAAGCGAGTCA
TCAGTTCCATGAGTAGGTCGTCGGGCACCTCCTCCAGTTCGTTATAGCCA
GCGCCACCGTATCCTCCATTGGATTGGCTGGGCATCGGAGCTGCCTCGAT
GCTCGAGATGGCCAAGAGGCAGAAGAGGAGGAAGGCCAAGGCGAAGCAAG
CGCATCGGTTTGTCATGTCGACTGATAACT
BO16425.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13094-PA | 351 | Dh31-RA | 1..348 | 366..19 | 1740 | 100 | Minus |
CG13094-PC | 354 | Dh31-RC | 93..351 | 277..19 | 1295 | 100 | Minus |
CG13094-PC | 354 | Dh31-RC | 1..89 | 366..278 | 445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:26:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dh31-RA | 1292 | CG13094-RA | 143..490 | 366..19 | 1740 | 100 | Minus |
Dh31-RC | 1295 | CG13094-RC | 143..493 | 366..19 | 1700 | 99.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:25:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8492670..8492802 | 19..151 | 665 | 100 | Plus |
2L | 23513712 | 2L | 8492967..8493094 | 152..279 | 640 | 100 | Plus |
2L | 23513712 | 2L | 8493747..8493835 | 278..366 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:25:58 has no hits.
BO16425.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:05 Download gff for
BO16425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13094-PA | 1..351 | 15..366 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:31 Download gff for
BO16425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh31-RA | 143..494 | 14..366 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:33 Download gff for
BO16425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh31-RA | 143..494 | 14..366 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:33 Download gff for
BO16425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8492666..8492802 | 14..151 | 98 | <- | Plus |
2L | 8492967..8493092 | 152..277 | 100 | <- | Plus |
2L | 8493747..8493835 | 278..366 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:31 Download gff for
BO16425.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8493747..8493835 | 278..366 | 100 | | Plus |
arm_2L | 8492666..8492802 | 14..151 | 98 | <- | Plus |
arm_2L | 8492967..8493092 | 152..277 | 100 | <- | Plus |
BO16425.5prime Sequence
380 bp (380 high quality bases) assembled on 2006-10-13
> BO16425.5prime
GAAGTTATCAGTCGACATGACAAACCGATGCGCTTGCTTCGCCTTGGCCT
TCCTCCTCTTCTGCCTCTTGGCCATCTCGAGCATCGAGGCAGCTCCGATG
CCCAGCCAATCCAATGGAGGATACGGTGGCGCTGGCTATAACGAACTGGA
GGAGGTGCCCGACGACCTACTCATGGAACTGATGACTCGCTTTGGACGCA
CCATCATACGGGCTCGAAACGATCTGGAGAATTCCAAACGAACCGTGGAC
TTTGGCTTGGCCCGGGGATATTCGGGTACCCAGGAGGCGAAACATCGCAT
GGGTCTGGCTGCAGCCAACTTTGCCGGAGGACCCGGTCGGAGGCGACGAT
CCGAGACCGATGTCGCAAGCTTTCTAGACC
BO16425.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13094-PA | 351 | Dh31-RA | 1..348 | 17..364 | 1740 | 100 | Plus |
CG13094-PC | 354 | Dh31-RC | 93..351 | 106..364 | 1295 | 100 | Plus |
CG13094-PC | 354 | Dh31-RC | 1..89 | 17..105 | 445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:12:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dh31-RA | 1292 | CG13094-RA | 143..490 | 17..364 | 1740 | 100 | Plus |
Dh31-RC | 1295 | CG13094-RC | 143..493 | 17..364 | 1700 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:12:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8492670..8492802 | 364..232 | 665 | 100 | Minus |
2L | 23513712 | 2L | 8492967..8493094 | 231..104 | 640 | 100 | Minus |
2L | 23513712 | 2L | 8493747..8493835 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:12:36 has no hits.
BO16425.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:06 Download gff for
BO16425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13094-PA | 1..351 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:07 Download gff for
BO16425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh31-RA | 143..494 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:34 Download gff for
BO16425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh31-RA | 143..494 | 17..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:34 Download gff for
BO16425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8492666..8492802 | 232..369 | 98 | <- | Minus |
2L | 8492967..8493092 | 106..231 | 100 | <- | Minus |
2L | 8493747..8493835 | 17..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:07 Download gff for
BO16425.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8492666..8492802 | 232..369 | 98 | <- | Minus |
arm_2L | 8492967..8493092 | 106..231 | 100 | <- | Minus |
arm_2L | 8493747..8493835 | 17..105 | 100 | | Minus |
BO16425.complete Sequence
382 bp assembled on 2006-10-11
GenBank Submission: FJ633826
> BO16425.complete
GAAGTTATCAGTCGACATGACAAACCGATGCGCTTGCTTCGCCTTGGCCT
TCCTCCTCTTCTGCCTCTTGGCCATCTCGAGCATCGAGGCAGCTCCGATG
CCCAGCCAATCCAATGGAGGATACGGTGGCGCTGGCTATAACGAACTGGA
GGAGGTGCCCGACGACCTACTCATGGAACTGATGACTCGCTTTGGACGCA
CCATCATACGGGCTCGAAACGATCTGGAGAATTCCAAACGAACCGTGGAC
TTTGGCTTGGCCCGGGGATATTCGGGTACCCAGGAGGCGAAACATCGCAT
GGGTCTGGCTGCAGCCAACTTTGCCGGAGGACCCGGTCGGAGGCGACGAT
CCGAGACCGATGTCGCAAGCTTTCTAGACCAT
BO16425.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:12:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dh31-RA | 351 | CG13094-PA | 1..348 | 17..364 | 1740 | 100 | Plus |
Dh31-RC | 354 | CG13094-PC | 1..351 | 17..364 | 1675 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dh31-RA | 1292 | CG13094-RA | 143..490 | 17..364 | 1740 | 100 | Plus |
Dh31-RC | 1295 | CG13094-RC | 143..493 | 17..364 | 1675 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8492670..8492802 | 364..232 | 665 | 100 | Minus |
2L | 23513712 | 2L | 8492967..8493094 | 231..104 | 640 | 100 | Minus |
2L | 23513712 | 2L | 8493747..8493835 | 105..17 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:12:03 has no hits.
BO16425.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:03 Download gff for
BO16425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh31-RA | 1..351 | 17..368 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:19 Download gff for
BO16425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh31-RA | 143..494 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:43 Download gff for
BO16425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh31-RA | 143..490 | 17..366 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:03 Download gff for
BO16425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh31-RA | 143..494 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:07 Download gff for
BO16425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dh31-RA | 143..490 | 17..366 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:07 Download gff for
BO16425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8492668..8492802 | 232..366 | 98 | <- | Minus |
2L | 8492967..8493092 | 106..231 | 100 | <- | Minus |
2L | 8493747..8493835 | 17..105 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:43 Download gff for
BO16425.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8492668..8492802 | 232..366 | 98 | <- | Minus |
arm_2L | 8492967..8493092 | 106..231 | 100 | <- | Minus |
arm_2L | 8493747..8493835 | 17..105 | 100 | | Minus |
BO16425.pep Sequence
Translation from 16 to 382
> BO16425.pep
MTNRCACFALAFLLFCLLAISSIEAAPMPSQSNGGYGGAGYNELEEVPDD
LLMELMTRFGRTIIRARNDLENSKRTVDFGLARGYSGTQEAKHRMGLAAA
NFAGGPGRRRRSETDVASFLDH
BO16425.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dh31-PA | 116 | CG13094-PA | 1..116 | 1..116 | 599 | 100 | Plus |
Dh31-PC | 117 | CG13094-PC | 1..117 | 1..116 | 582 | 98.3 | Plus |