Clone BO16425 Report

Search the DGRC for BO16425

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptDh31-RA
Protein status:BO16425.pep: validated full length
Sequenced Size:382

Clone Sequence Records

BO16425.3prime Sequence

380 bp (380 high quality bases) assembled on 2006-10-13

> BO16425.3prime
ATGGTCTAGAAAGCTTGCGACATCGGTCTCGGATCGTCGCCTCCGACCGG
GTCCTCCGGCAAAGTTGGCTGCAGCCAGACCCATGCGATGTTTCGCCTCC
TGGGTACCCGAATATCCCCGGGCCAAGCCAAAGTCCACGGTTCGTTTGGA
ATTCTCCAGATCGTTTCGAGCCCGTATGATGGTGCGTCCAAAGCGAGTCA
TCAGTTCCATGAGTAGGTCGTCGGGCACCTCCTCCAGTTCGTTATAGCCA
GCGCCACCGTATCCTCCATTGGATTGGCTGGGCATCGGAGCTGCCTCGAT
GCTCGAGATGGCCAAGAGGCAGAAGAGGAGGAAGGCCAAGGCGAAGCAAG
CGCATCGGTTTGTCATGTCGACTGATAACT

BO16425.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13094-PA 351 Dh31-RA 1..348 366..19 1740 100 Minus
CG13094-PC 354 Dh31-RC 93..351 277..19 1295 100 Minus
CG13094-PC 354 Dh31-RC 1..89 366..278 445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dh31-RA 1292 CG13094-RA 143..490 366..19 1740 100 Minus
Dh31-RC 1295 CG13094-RC 143..493 366..19 1700 99.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:25:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8492670..8492802 19..151 665 100 Plus
2L 23513712 2L 8492967..8493094 152..279 640 100 Plus
2L 23513712 2L 8493747..8493835 278..366 445 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:25:58 has no hits.

BO16425.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:05 Download gff for BO16425.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13094-PA 1..351 15..366 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:31 Download gff for BO16425.3prime
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 143..494 14..366 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:33 Download gff for BO16425.3prime
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 143..494 14..366 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:33 Download gff for BO16425.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8492666..8492802 14..151 98 <- Plus
2L 8492967..8493092 152..277 100 <- Plus
2L 8493747..8493835 278..366 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:31 Download gff for BO16425.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8493747..8493835 278..366 100   Plus
arm_2L 8492666..8492802 14..151 98 <- Plus
arm_2L 8492967..8493092 152..277 100 <- Plus

BO16425.5prime Sequence

380 bp (380 high quality bases) assembled on 2006-10-13

> BO16425.5prime
GAAGTTATCAGTCGACATGACAAACCGATGCGCTTGCTTCGCCTTGGCCT
TCCTCCTCTTCTGCCTCTTGGCCATCTCGAGCATCGAGGCAGCTCCGATG
CCCAGCCAATCCAATGGAGGATACGGTGGCGCTGGCTATAACGAACTGGA
GGAGGTGCCCGACGACCTACTCATGGAACTGATGACTCGCTTTGGACGCA
CCATCATACGGGCTCGAAACGATCTGGAGAATTCCAAACGAACCGTGGAC
TTTGGCTTGGCCCGGGGATATTCGGGTACCCAGGAGGCGAAACATCGCAT
GGGTCTGGCTGCAGCCAACTTTGCCGGAGGACCCGGTCGGAGGCGACGAT
CCGAGACCGATGTCGCAAGCTTTCTAGACC

BO16425.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13094-PA 351 Dh31-RA 1..348 17..364 1740 100 Plus
CG13094-PC 354 Dh31-RC 93..351 106..364 1295 100 Plus
CG13094-PC 354 Dh31-RC 1..89 17..105 445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dh31-RA 1292 CG13094-RA 143..490 17..364 1740 100 Plus
Dh31-RC 1295 CG13094-RC 143..493 17..364 1700 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:12:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8492670..8492802 364..232 665 100 Minus
2L 23513712 2L 8492967..8493094 231..104 640 100 Minus
2L 23513712 2L 8493747..8493835 105..17 445 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:12:36 has no hits.

BO16425.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:06 Download gff for BO16425.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13094-PA 1..351 17..368 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:07 Download gff for BO16425.5prime
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 143..494 17..369 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:34 Download gff for BO16425.5prime
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 143..494 17..369 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:34 Download gff for BO16425.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8492666..8492802 232..369 98 <- Minus
2L 8492967..8493092 106..231 100 <- Minus
2L 8493747..8493835 17..105 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:07 Download gff for BO16425.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8492666..8492802 232..369 98 <- Minus
arm_2L 8492967..8493092 106..231 100 <- Minus
arm_2L 8493747..8493835 17..105 100   Minus

BO16425.complete Sequence

382 bp assembled on 2006-10-11

GenBank Submission: FJ633826

> BO16425.complete
GAAGTTATCAGTCGACATGACAAACCGATGCGCTTGCTTCGCCTTGGCCT
TCCTCCTCTTCTGCCTCTTGGCCATCTCGAGCATCGAGGCAGCTCCGATG
CCCAGCCAATCCAATGGAGGATACGGTGGCGCTGGCTATAACGAACTGGA
GGAGGTGCCCGACGACCTACTCATGGAACTGATGACTCGCTTTGGACGCA
CCATCATACGGGCTCGAAACGATCTGGAGAATTCCAAACGAACCGTGGAC
TTTGGCTTGGCCCGGGGATATTCGGGTACCCAGGAGGCGAAACATCGCAT
GGGTCTGGCTGCAGCCAACTTTGCCGGAGGACCCGGTCGGAGGCGACGAT
CCGAGACCGATGTCGCAAGCTTTCTAGACCAT

BO16425.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:12:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dh31-RA 351 CG13094-PA 1..348 17..364 1740 100 Plus
Dh31-RC 354 CG13094-PC 1..351 17..364 1675 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dh31-RA 1292 CG13094-RA 143..490 17..364 1740 100 Plus
Dh31-RC 1295 CG13094-RC 143..493 17..364 1675 99.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8492670..8492802 364..232 665 100 Minus
2L 23513712 2L 8492967..8493094 231..104 640 100 Minus
2L 23513712 2L 8493747..8493835 105..17 445 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:12:03 has no hits.

BO16425.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:03 Download gff for BO16425.complete
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 1..351 17..368 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:19 Download gff for BO16425.complete
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 143..494 17..369 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:43 Download gff for BO16425.complete
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 143..490 17..366 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:03 Download gff for BO16425.complete
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 143..494 17..369 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:07 Download gff for BO16425.complete
Subject Subject Range Query Range Percent Splice Strand
Dh31-RA 143..490 17..366 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:07 Download gff for BO16425.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8492668..8492802 232..366 98 <- Minus
2L 8492967..8493092 106..231 100 <- Minus
2L 8493747..8493835 17..105 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:43 Download gff for BO16425.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8492668..8492802 232..366 98 <- Minus
arm_2L 8492967..8493092 106..231 100 <- Minus
arm_2L 8493747..8493835 17..105 100   Minus

BO16425.pep Sequence

Translation from 16 to 382

> BO16425.pep
MTNRCACFALAFLLFCLLAISSIEAAPMPSQSNGGYGGAGYNELEEVPDD
LLMELMTRFGRTIIRARNDLENSKRTVDFGLARGYSGTQEAKHRMGLAAA
NFAGGPGRRRRSETDVASFLDH

BO16425.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dh31-PA 116 CG13094-PA 1..116 1..116 599 100 Plus
Dh31-PC 117 CG13094-PC 1..117 1..116 582 98.3 Plus