Clone Sequence Records
BO16427.3prime Sequence
718 bp (661 high quality bases) assembled on 2006-10-13
> BO16427.3prime
ATGGTCTAGAAAGCTTGCGCTAGATCCGGTTGTGGAGGTGACCTGACTCC
GCTGCAGGCGCAGCCATTCAACAAACTCATCCAGCATGACGGGCCAAGCT
CCGTCGATATCGTAGTTTGATAGATCAATGCTAATGGTGCGCGAGAACTC
GAGAATATTACACCACTGATCTTTGTTGATCGCCTTGTACTTTGATTGCT
CTAGAAACTGTGCGAACTGTGGATACAGAGGCCAATGTTTGCCCAAAAGT
AGTTGAAGCATGGCTTTGGCAGTGAGTATATCCATACACCGTTGGTCCGA
GTCCTTGGCAAAGTCGTAGGCGTATCTGTAGATGCTTTTAAAGGAGTTGG
GATCGTTGAGTATGCTGCGCAGATAGTCCAATTTCACAACCATTTTCGCT
GCCGAATCGCAGTCGAGTTCTGTGAGGCCCTTTAGCCACTCCTGCTGGCT
GAAGAAGCCCATCTGGGTGGCGCCCATTTTGTAGGCCAGCACCAGCATCA
CAATATTCTCGGGCTCCACGCCGATATCCTCGCAGAATTTTTCCATGCCA
TCGGGACCCAATGTCTCCGGTTCATCTGGTGTTGTGTACTCCTGGAACCA
GGCCATGCAACGCTTTTGACTGAAGCCATCTTCCAATCTGATATGGCGTC
TGCTGCTCTGTTGTGTGGGTATGCTGGTGTAGCTGGTTCGGGCCCTCTTC
GGTTGACCATGATCCATG
BO16427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6597-PA | 747 | CG6597-RA | 45..744 | 718..19 | 3500 | 100 | Minus |
CG6597-PB | 747 | CG6597-RB | 45..744 | 718..19 | 3500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6597-RE | 1289 | CG6597-RE | 219..918 | 718..19 | 3500 | 100 | Minus |
CG6597-RB | 1947 | CG6597-RB | 560..1259 | 718..19 | 3500 | 100 | Minus |
CG6597-RA | 1295 | CG6597-RA | 225..924 | 718..19 | 3500 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 08:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20308093..20308348 | 558..303 | 1280 | 100 | Minus |
3L | 28110227 | 3L | 20308407..20308617 | 305..95 | 1055 | 100 | Minus |
3L | 28110227 | 3L | 20307828..20307924 | 652..556 | 485 | 100 | Minus |
3L | 28110227 | 3L | 20308747..20308823 | 95..19 | 385 | 100 | Minus |
3L | 28110227 | 3L | 20303277..20303345 | 718..650 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 08:56:01 has no hits.
BO16427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:09 Download gff for
BO16427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6597-PB | 45..747 | 16..718 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:47:09 Download gff for
BO16427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6597-RA | 225..924 | 19..718 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:09:04 Download gff for
BO16427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6597-RA | 225..924 | 19..718 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 12:09:04 Download gff for
BO16427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20308094..20308347 | 304..557 | 100 | -> | Minus |
3L | 20308409..20308616 | 96..303 | 100 | -> | Minus |
3L | 20308747..20308823 | 19..95 | 100 | | Minus |
3L | 20303277..20303345 | 650..718 | 100 | -> | Minus |
3L | 20307831..20307922 | 558..649 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:47:09 Download gff for
BO16427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20301847..20301923 | 19..95 | 100 | | Minus |
arm_3L | 20296377..20296445 | 650..718 | 100 | -> | Minus |
arm_3L | 20300931..20301022 | 558..649 | 100 | -> | Minus |
arm_3L | 20301194..20301447 | 304..557 | 100 | -> | Minus |
arm_3L | 20301509..20301716 | 96..303 | 100 | -> | Minus |
BO16427.5prime Sequence
702 bp (701 high quality bases) assembled on 2006-10-13
> BO16427.5prime
GAAGTTATCAGTCGACATGCCACGGGGAAAACGCCGAGCTGCAGATACTA
TTAGCGACAACATGGATCATGGTCAACCGAAGAGGGCCCGAACCAGCTAC
ACCAGCATACCCACACAACAGAGCAGCAGACGCCATATCAGATTGGAAGA
TGGCTTCAGTCAAAAGCGTTGCATGGCCTGGTTCCAGGAGTACACAACAC
CAGATGAACCGGAGACATTGGGTCCCGATGGCATGGAAAAATTCTGCGAG
GATATCGGCGTGGAGCCCGAGAATATTGTGATGCTGGTGCTGGCCTACAA
AATGGGCGCCACCCAGATGGGCTTCTTCAGCCAGCAGGAGTGGCTAAAGG
GCCTCACAGAACTCGACTGCGATTCGGCAGCGAAAATGGTTGTGAAATTG
GACTATCTGCGCAGCATACTCAACGATCCCAACTCCTTTAAAAGCATCTA
CAGATACGCCTACGACTTTGCCAAGGACTCGGACCAACGGTGTATGGATA
TACTCACTGCCAAAGCCATGCTTCAACTACTTTTGGGCAAACATTGGCCT
CTGTATCCACAGTTCGCACAGTTTCTAGAGCAATCAAAGTACAAGGCGAT
CAACAAAGATCAGTGGTGTAATATTCTCGAGTTCTCGCGCACCATTAGCA
TTGATCTATCAAACTACGATATCGACGGAGCTTGGCCCGTCATGCTGGAT
GA
BO16427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6597-PA | 747 | CG6597-RA | 1..686 | 17..702 | 3430 | 100 | Plus |
CG6597-PB | 747 | CG6597-RB | 1..686 | 17..702 | 3430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6597-RE | 1289 | CG6597-RE | 174..860 | 16..702 | 3435 | 100 | Plus |
CG6597-RB | 1947 | CG6597-RB | 515..1201 | 16..702 | 3435 | 100 | Plus |
CG6597-RA | 1295 | CG6597-RA | 180..866 | 16..702 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20308093..20308348 | 221..476 | 1280 | 100 | Plus |
3L | 28110227 | 3L | 20308407..20308617 | 474..684 | 1055 | 100 | Plus |
3L | 28110227 | 3L | 20303232..20303345 | 16..129 | 570 | 100 | Plus |
3L | 28110227 | 3L | 20307828..20307924 | 127..223 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:38:43 has no hits.
BO16427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:10 Download gff for
BO16427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6597-PB | 1..685 | 17..701 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:46:13 Download gff for
BO16427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6597-RA | 174..865 | 7..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:53 Download gff for
BO16427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6597-RA | 174..865 | 7..701 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:53 Download gff for
BO16427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20308409..20308616 | 476..683 | 100 | -> | Plus |
3L | 20308747..20308764 | 684..701 | 100 | | Plus |
3L | 20303226..20303345 | 7..129 | 96 | -> | Plus |
3L | 20307831..20307922 | 130..221 | 100 | -> | Plus |
3L | 20308094..20308347 | 222..475 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:46:13 Download gff for
BO16427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20296326..20296445 | 7..129 | 96 | -> | Plus |
arm_3L | 20300931..20301022 | 130..221 | 100 | -> | Plus |
arm_3L | 20301194..20301447 | 222..475 | 100 | -> | Plus |
arm_3L | 20301509..20301716 | 476..683 | 100 | -> | Plus |
arm_3L | 20301847..20301864 | 684..701 | 100 | | Plus |
BO16427.complete Sequence
778 bp assembled on 2006-10-11
GenBank Submission: FJ633827
> BO16427.complete
GAAGTTATCAGTCGACATGCCACGGGGAAAACGCCGAGCTGCAGATACTA
TTAGCGACAACATGGATCATGGTCAACCGAAGAGGGCCCGAACCAGCTAC
ACCAGCATACCCACACAACAGAGCAGCAGACGCCATATCAGATTGGAAGA
TGGCTTCAGTCAAAAGCGTTGCATGGCCTGGTTCCAGGAGTACACAACAC
CAGATGAACCGGAGACATTGGGTCCCGATGGCATGGAAAAATTCTGCGAG
GATATCGGCGTGGAGCCCGAGAATATTGTGATGCTGGTGCTGGCCTACAA
AATGGGCGCCACCCAGATGGGCTTCTTCAGCCAGCAGGAGTGGCTAAAGG
GCCTCACAGAACTCGACTGCGATTCGGCAGCGAAAATGGTTGTGAAATTG
GACTATCTGCGCAGCATACTCAACGATCCCAACTCCTTTAAAAGCATCTA
CAGATACGCCTACGACTTTGCCAAGGACTCGGACCAACGGTGTATGGATA
TACTCACTGCCAAAGCCATGCTTCAACTACTTTTGGGCAAACATTGGCCT
CTGTATCCACAGTTCGCACAGTTTCTAGAGCAATCAAAGTACAAGGCGAT
CAACAAAGATCAGTGGTGTAATATTCTCGAGTTCTCGCGCACCATTAGCA
TTGATCTATCAAACTACGATATCGACGGAGCTTGGCCCGTCATGCTGGAT
GAGTTTGTTGAATGGCTGCGCCTGCAGCGGAGTCAGGTCACCTCCACAAC
CGGATCTAGCGCAAGCTTTCTAGACCAT
BO16427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:56:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6597-RE | 747 | CG6597-PE | 1..744 | 17..760 | 3720 | 100 | Plus |
CG6597-RB | 747 | CG6597-PB | 1..744 | 17..760 | 3720 | 100 | Plus |
CG6597-RA | 747 | CG6597-PA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6597-RE | 1289 | CG6597-RE | 174..918 | 16..760 | 3725 | 100 | Plus |
CG6597-RB | 1947 | CG6597-RB | 515..1259 | 16..760 | 3725 | 100 | Plus |
CG6597-RA | 1295 | CG6597-RA | 180..924 | 16..760 | 3725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20308093..20308348 | 221..476 | 1280 | 100 | Plus |
3L | 28110227 | 3L | 20308407..20308617 | 474..684 | 1055 | 100 | Plus |
3L | 28110227 | 3L | 20303232..20303345 | 16..129 | 570 | 100 | Plus |
3L | 28110227 | 3L | 20307828..20307924 | 127..223 | 485 | 100 | Plus |
3L | 28110227 | 3L | 20308747..20308823 | 684..760 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:56:45 has no hits.
BO16427.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:40 Download gff for
BO16427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6597-RB | 1..747 | 17..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:29 Download gff for
BO16427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6597-RB | 467..1217 | 7..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:49 Download gff for
BO16427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6597-RA | 181..924 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:40 Download gff for
BO16427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6597-RB | 467..1217 | 7..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:50 Download gff for
BO16427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6597-RA | 181..924 | 17..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:50 Download gff for
BO16427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20307831..20307922 | 130..221 | 100 | -> | Plus |
3L | 20308094..20308347 | 222..475 | 100 | -> | Plus |
3L | 20308409..20308616 | 476..683 | 100 | -> | Plus |
3L | 20308747..20308823 | 684..762 | 97 | | Plus |
3L | 20303233..20303345 | 17..129 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:49 Download gff for
BO16427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20301847..20301923 | 684..762 | 97 | | Plus |
arm_3L | 20296333..20296445 | 17..129 | 100 | -> | Plus |
arm_3L | 20300931..20301022 | 130..221 | 100 | -> | Plus |
arm_3L | 20301194..20301447 | 222..475 | 100 | -> | Plus |
arm_3L | 20301509..20301716 | 476..683 | 100 | -> | Plus |
BO16427.pep Sequence
Translation from 16 to 778
> BO16427.pep
MPRGKRRAADTISDNMDHGQPKRARTSYTSIPTQQSSRRHIRLEDGFSQK
RCMAWFQEYTTPDEPETLGPDGMEKFCEDIGVEPENIVMLVLAYKMGATQ
MGFFSQQEWLKGLTELDCDSAAKMVVKLDYLRSILNDPNSFKSIYRYAYD
FAKDSDQRCMDILTAKAMLQLLLGKHWPLYPQFAQFLEQSKYKAINKDQW
CNILEFSRTISIDLSNYDIDGAWPVMLDEFVEWLRLQRSQVTSTTGSSAS
FLDH
BO16427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6597-PE | 248 | CG6597-PE | 1..248 | 1..248 | 1319 | 100 | Plus |
CG6597-PB | 248 | CG6597-PB | 1..248 | 1..248 | 1319 | 100 | Plus |
CG6597-PA | 248 | CG6597-PA | 1..248 | 1..248 | 1319 | 100 | Plus |
CG6597-PD | 213 | CG6597-PD | 2..213 | 37..248 | 1123 | 99.1 | Plus |
CG7427-PE | 288 | CG7427-PE | 58..242 | 49..233 | 344 | 35.7 | Plus |