Clone BO16427 Report

Search the DGRC for BO16427

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG6597-RA
Protein status:BO16427.pep: validated full length
Sequenced Size:778

Clone Sequence Records

BO16427.3prime Sequence

718 bp (661 high quality bases) assembled on 2006-10-13

> BO16427.3prime
ATGGTCTAGAAAGCTTGCGCTAGATCCGGTTGTGGAGGTGACCTGACTCC
GCTGCAGGCGCAGCCATTCAACAAACTCATCCAGCATGACGGGCCAAGCT
CCGTCGATATCGTAGTTTGATAGATCAATGCTAATGGTGCGCGAGAACTC
GAGAATATTACACCACTGATCTTTGTTGATCGCCTTGTACTTTGATTGCT
CTAGAAACTGTGCGAACTGTGGATACAGAGGCCAATGTTTGCCCAAAAGT
AGTTGAAGCATGGCTTTGGCAGTGAGTATATCCATACACCGTTGGTCCGA
GTCCTTGGCAAAGTCGTAGGCGTATCTGTAGATGCTTTTAAAGGAGTTGG
GATCGTTGAGTATGCTGCGCAGATAGTCCAATTTCACAACCATTTTCGCT
GCCGAATCGCAGTCGAGTTCTGTGAGGCCCTTTAGCCACTCCTGCTGGCT
GAAGAAGCCCATCTGGGTGGCGCCCATTTTGTAGGCCAGCACCAGCATCA
CAATATTCTCGGGCTCCACGCCGATATCCTCGCAGAATTTTTCCATGCCA
TCGGGACCCAATGTCTCCGGTTCATCTGGTGTTGTGTACTCCTGGAACCA
GGCCATGCAACGCTTTTGACTGAAGCCATCTTCCAATCTGATATGGCGTC
TGCTGCTCTGTTGTGTGGGTATGCTGGTGTAGCTGGTTCGGGCCCTCTTC
GGTTGACCATGATCCATG

BO16427.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6597-PA 747 CG6597-RA 45..744 718..19 3500 100 Minus
CG6597-PB 747 CG6597-RB 45..744 718..19 3500 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 08:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6597-RE 1289 CG6597-RE 219..918 718..19 3500 100 Minus
CG6597-RB 1947 CG6597-RB 560..1259 718..19 3500 100 Minus
CG6597-RA 1295 CG6597-RA 225..924 718..19 3500 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 08:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20308093..20308348 558..303 1280 100 Minus
3L 28110227 3L 20308407..20308617 305..95 1055 100 Minus
3L 28110227 3L 20307828..20307924 652..556 485 100 Minus
3L 28110227 3L 20308747..20308823 95..19 385 100 Minus
3L 28110227 3L 20303277..20303345 718..650 345 100 Minus
Blast to na_te.dros performed on 2015-02-08 08:56:01 has no hits.

BO16427.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:09 Download gff for BO16427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6597-PB 45..747 16..718 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 22:47:09 Download gff for BO16427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6597-RA 225..924 19..718 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:09:04 Download gff for BO16427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6597-RA 225..924 19..718 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 12:09:04 Download gff for BO16427.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20308094..20308347 304..557 100 -> Minus
3L 20308409..20308616 96..303 100 -> Minus
3L 20308747..20308823 19..95 100   Minus
3L 20303277..20303345 650..718 100 -> Minus
3L 20307831..20307922 558..649 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 22:47:09 Download gff for BO16427.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20301847..20301923 19..95 100   Minus
arm_3L 20296377..20296445 650..718 100 -> Minus
arm_3L 20300931..20301022 558..649 100 -> Minus
arm_3L 20301194..20301447 304..557 100 -> Minus
arm_3L 20301509..20301716 96..303 100 -> Minus

BO16427.5prime Sequence

702 bp (701 high quality bases) assembled on 2006-10-13

> BO16427.5prime
GAAGTTATCAGTCGACATGCCACGGGGAAAACGCCGAGCTGCAGATACTA
TTAGCGACAACATGGATCATGGTCAACCGAAGAGGGCCCGAACCAGCTAC
ACCAGCATACCCACACAACAGAGCAGCAGACGCCATATCAGATTGGAAGA
TGGCTTCAGTCAAAAGCGTTGCATGGCCTGGTTCCAGGAGTACACAACAC
CAGATGAACCGGAGACATTGGGTCCCGATGGCATGGAAAAATTCTGCGAG
GATATCGGCGTGGAGCCCGAGAATATTGTGATGCTGGTGCTGGCCTACAA
AATGGGCGCCACCCAGATGGGCTTCTTCAGCCAGCAGGAGTGGCTAAAGG
GCCTCACAGAACTCGACTGCGATTCGGCAGCGAAAATGGTTGTGAAATTG
GACTATCTGCGCAGCATACTCAACGATCCCAACTCCTTTAAAAGCATCTA
CAGATACGCCTACGACTTTGCCAAGGACTCGGACCAACGGTGTATGGATA
TACTCACTGCCAAAGCCATGCTTCAACTACTTTTGGGCAAACATTGGCCT
CTGTATCCACAGTTCGCACAGTTTCTAGAGCAATCAAAGTACAAGGCGAT
CAACAAAGATCAGTGGTGTAATATTCTCGAGTTCTCGCGCACCATTAGCA
TTGATCTATCAAACTACGATATCGACGGAGCTTGGCCCGTCATGCTGGAT
GA

BO16427.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6597-PA 747 CG6597-RA 1..686 17..702 3430 100 Plus
CG6597-PB 747 CG6597-RB 1..686 17..702 3430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6597-RE 1289 CG6597-RE 174..860 16..702 3435 100 Plus
CG6597-RB 1947 CG6597-RB 515..1201 16..702 3435 100 Plus
CG6597-RA 1295 CG6597-RA 180..866 16..702 3435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20308093..20308348 221..476 1280 100 Plus
3L 28110227 3L 20308407..20308617 474..684 1055 100 Plus
3L 28110227 3L 20303232..20303345 16..129 570 100 Plus
3L 28110227 3L 20307828..20307924 127..223 485 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:38:43 has no hits.

BO16427.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:10 Download gff for BO16427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6597-PB 1..685 17..701 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 16:46:13 Download gff for BO16427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6597-RA 174..865 7..701 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:53 Download gff for BO16427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6597-RA 174..865 7..701 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:53 Download gff for BO16427.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20308409..20308616 476..683 100 -> Plus
3L 20308747..20308764 684..701 100   Plus
3L 20303226..20303345 7..129 96 -> Plus
3L 20307831..20307922 130..221 100 -> Plus
3L 20308094..20308347 222..475 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 16:46:13 Download gff for BO16427.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20296326..20296445 7..129 96 -> Plus
arm_3L 20300931..20301022 130..221 100 -> Plus
arm_3L 20301194..20301447 222..475 100 -> Plus
arm_3L 20301509..20301716 476..683 100 -> Plus
arm_3L 20301847..20301864 684..701 100   Plus

BO16427.complete Sequence

778 bp assembled on 2006-10-11

GenBank Submission: FJ633827

> BO16427.complete
GAAGTTATCAGTCGACATGCCACGGGGAAAACGCCGAGCTGCAGATACTA
TTAGCGACAACATGGATCATGGTCAACCGAAGAGGGCCCGAACCAGCTAC
ACCAGCATACCCACACAACAGAGCAGCAGACGCCATATCAGATTGGAAGA
TGGCTTCAGTCAAAAGCGTTGCATGGCCTGGTTCCAGGAGTACACAACAC
CAGATGAACCGGAGACATTGGGTCCCGATGGCATGGAAAAATTCTGCGAG
GATATCGGCGTGGAGCCCGAGAATATTGTGATGCTGGTGCTGGCCTACAA
AATGGGCGCCACCCAGATGGGCTTCTTCAGCCAGCAGGAGTGGCTAAAGG
GCCTCACAGAACTCGACTGCGATTCGGCAGCGAAAATGGTTGTGAAATTG
GACTATCTGCGCAGCATACTCAACGATCCCAACTCCTTTAAAAGCATCTA
CAGATACGCCTACGACTTTGCCAAGGACTCGGACCAACGGTGTATGGATA
TACTCACTGCCAAAGCCATGCTTCAACTACTTTTGGGCAAACATTGGCCT
CTGTATCCACAGTTCGCACAGTTTCTAGAGCAATCAAAGTACAAGGCGAT
CAACAAAGATCAGTGGTGTAATATTCTCGAGTTCTCGCGCACCATTAGCA
TTGATCTATCAAACTACGATATCGACGGAGCTTGGCCCGTCATGCTGGAT
GAGTTTGTTGAATGGCTGCGCCTGCAGCGGAGTCAGGTCACCTCCACAAC
CGGATCTAGCGCAAGCTTTCTAGACCAT

BO16427.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:56:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6597-RE 747 CG6597-PE 1..744 17..760 3720 100 Plus
CG6597-RB 747 CG6597-PB 1..744 17..760 3720 100 Plus
CG6597-RA 747 CG6597-PA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6597-RE 1289 CG6597-RE 174..918 16..760 3725 100 Plus
CG6597-RB 1947 CG6597-RB 515..1259 16..760 3725 100 Plus
CG6597-RA 1295 CG6597-RA 180..924 16..760 3725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20308093..20308348 221..476 1280 100 Plus
3L 28110227 3L 20308407..20308617 474..684 1055 100 Plus
3L 28110227 3L 20303232..20303345 16..129 570 100 Plus
3L 28110227 3L 20307828..20307924 127..223 485 100 Plus
3L 28110227 3L 20308747..20308823 684..760 385 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:56:45 has no hits.

BO16427.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:40 Download gff for BO16427.complete
Subject Subject Range Query Range Percent Splice Strand
CG6597-RB 1..747 17..763 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:29 Download gff for BO16427.complete
Subject Subject Range Query Range Percent Splice Strand
CG6597-RB 467..1217 7..760 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:06:49 Download gff for BO16427.complete
Subject Subject Range Query Range Percent Splice Strand
CG6597-RA 181..924 17..762 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:40 Download gff for BO16427.complete
Subject Subject Range Query Range Percent Splice Strand
CG6597-RB 467..1217 7..760 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:50 Download gff for BO16427.complete
Subject Subject Range Query Range Percent Splice Strand
CG6597-RA 181..924 17..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:50 Download gff for BO16427.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20307831..20307922 130..221 100 -> Plus
3L 20308094..20308347 222..475 100 -> Plus
3L 20308409..20308616 476..683 100 -> Plus
3L 20308747..20308823 684..762 97   Plus
3L 20303233..20303345 17..129 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:06:49 Download gff for BO16427.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20301847..20301923 684..762 97   Plus
arm_3L 20296333..20296445 17..129 100 -> Plus
arm_3L 20300931..20301022 130..221 100 -> Plus
arm_3L 20301194..20301447 222..475 100 -> Plus
arm_3L 20301509..20301716 476..683 100 -> Plus

BO16427.pep Sequence

Translation from 16 to 778

> BO16427.pep
MPRGKRRAADTISDNMDHGQPKRARTSYTSIPTQQSSRRHIRLEDGFSQK
RCMAWFQEYTTPDEPETLGPDGMEKFCEDIGVEPENIVMLVLAYKMGATQ
MGFFSQQEWLKGLTELDCDSAAKMVVKLDYLRSILNDPNSFKSIYRYAYD
FAKDSDQRCMDILTAKAMLQLLLGKHWPLYPQFAQFLEQSKYKAINKDQW
CNILEFSRTISIDLSNYDIDGAWPVMLDEFVEWLRLQRSQVTSTTGSSAS
FLDH

BO16427.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6597-PE 248 CG6597-PE 1..248 1..248 1319 100 Plus
CG6597-PB 248 CG6597-PB 1..248 1..248 1319 100 Plus
CG6597-PA 248 CG6597-PA 1..248 1..248 1319 100 Plus
CG6597-PD 213 CG6597-PD 2..213 37..248 1123 99.1 Plus
CG7427-PE 288 CG7427-PE 58..242 49..233 344 35.7 Plus