Clone BO16429 Report

Search the DGRC for BO16429

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG2076-RA
Protein status:BO16429.pep: validated full length
Sequenced Size:1057

Clone Sequence Records

BO16429.3prime Sequence

595 bp (519 high quality bases) assembled on 2006-10-13

> BO16429.3prime
ATGGTCTAGAAAGCTTGCCTTCCTGCGCTGACCACCACTCAGAATGGTAA
CGATGCGGATGAATATGTTCAGCACGTCCATGTAGATCGACATTGAGGCG
TTGATTGGATCGTAGGGAGTGTAGCTGTACTGGGGATAGACCTCAGCGCG
ACGGACCATGCGCTGAGTGTCATAGAGCAGGAAGCCACTGAAGAGGACGA
GGCCGCCATATAGGGACATGGAGGCCAGACCTGCGCCCAGCGCCGTGGTG
GGCGGCAGCCACATGGATGCCAGCGAGGAGGCGAACACCACGCCCAAGCC
AATGGCCAGTGGGCCGCCCATGTAGAGGAACTTATCGCTGGGTGCACACG
CGGCGATCGTGGACAAGCCACCAACAATGCCGCCCGTGTAGAGAGCGGCG
CGCGTCAAAATCGGTCCGCCCATGAAGCAAATGGGTGCGATCACGGCGCC
CAGAATGGCGCAGTGCACCGCCCAGGCCAGATGCTTGGCTCCCAGACCCG
GCTGGTACTCAATCGAGCGGGCAACTGCTCCACTACCAATGACCAGCGCC
AGCGAAGCAATGGTCGCCCAGATGCCGCCCCGCGAGGCCAGCTCC

BO16429.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2076-PA 1026 CG2076-RA 447..1023 595..19 2835 99.6 Minus
CG1287-PA 1098 CG1287-RA 790..863 321..248 195 90.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2076-RB 1491 CG2076-RB 816..1392 595..19 2855 99.7 Minus
CG2076-RA 1319 CG2076-RA 644..1220 595..19 2855 99.7 Minus
CG1287-RA 1426 CG1287-RA 740..1193 504..51 605 76.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:46:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11091290..11091629 568..229 1700 100 Minus
X 23542271 X 11091720..11091857 235..98 690 100 Minus
3R 32079331 3R 7501184..7501637 51..504 545 74.7 Plus
X 23542271 X 11091921..11091999 97..19 395 100 Minus
Blast to na_te.dros performed 2015-02-12 03:46:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsil\Loa 7779 Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). 3163..3242 213..294 135 64.6 Plus

BO16429.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:12 Download gff for BO16429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2076-PA 447..1026 16..595 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:26 Download gff for BO16429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2076-RA 644..1225 13..595 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:39 Download gff for BO16429.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2076-RA 644..1225 13..595 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:39 Download gff for BO16429.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11091165..11091192 568..595 92 -> Minus
X 11091291..11091627 231..567 100 -> Minus
X 11091725..11091857 98..230 100 -> Minus
X 11091921..11092004 13..97 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:26 Download gff for BO16429.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10985198..10985225 568..595 92 -> Minus
arm_X 10985324..10985660 231..567 100 -> Minus
arm_X 10985758..10985890 98..230 100 -> Minus
arm_X 10985954..10986037 13..97 96   Minus

BO16429.5prime Sequence

669 bp (579 high quality bases) assembled on 2006-10-13

> BO16429.5prime
GAAGTTATCAGTCGACATGTTGCTGCGTCTAGCACTTTCCACCGCCCGTC
CAGCCGGGGCTATCAAGATCCTGGCCCAGTCTCCGGCCCAGCTGTTCCGG
GCCAATGCCAATCCCAATCTGAATCTCTCCACGGTGCGCACCTACGCCCG
CAGGGTGGTTCGCACCCGTGAGCCCGTCGAAGAGATGCGTGCTCCCTCGC
TGAAGGAGAAACTGATGGGTCCGCCAAGTGCCAATGCATACTCCATGGGC
AAGGGCGCTGCCGCCGGAGCAGCCGCCGTGGGATTGGGCGCCCTGTGCTA
CTACGGCGTGGGATTGGGAAAACAAACCAGCATCGCGGATAATGCCATCA
TGTGGCCCCAGTTTGTGCGCGATCGTATCCAGAGCACCTATGCCTTTTTC
GGTGGCTCTTGCGTTCTCACCGCGGCCGCAGCAGCAGCCACCTTCCGTTC
GCACCGTCTCCTGGAGCTGGCCTCGCGTGGCGGCATCTTGGCGACCATTG
CTTCGCTGGCGCTGGTCATTGGTAGTGGAGCAGTTGCCCGCTCGATTGAG
TACCAGCCGGGTCTGGGAGCCAAGCATCTGGCCTGGGCGGTGCACTGCGC
CATTCTGGGCGCCGTGATCGCACCCATTTGCTTCATGGGCGGACCGATTT
TGACGCGCGCCGCTCTCTA

BO16429.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG2076-PA 1026 CG2076-RA 1..653 17..669 3265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2076-RB 1491 CG2076-RB 370..1022 17..669 3265 100 Plus
CG2076-RA 1319 CG2076-RA 198..850 17..669 3265 100 Plus
CG1287-RA 1426 CG1287-RA 740..840 554..654 205 80.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11090579..11090798 17..236 1100 100 Plus
X 23542271 X 11091290..11091469 490..669 900 100 Plus
X 23542271 X 11091051..11091193 349..491 715 100 Plus
X 23542271 X 11090865..11090977 236..348 565 100 Plus
3R 32079331 3R 7501537..7501637 654..554 205 80.2 Minus
Blast to na_te.dros performed on 2015-01-31 10:02:20 has no hits.

BO16429.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:14 Download gff for BO16429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2076-PA 1..652 17..668 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:31:46 Download gff for BO16429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2076-RA 191..849 9..668 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:33 Download gff for BO16429.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2076-RA 191..849 9..668 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:33 Download gff for BO16429.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11090572..11090798 9..236 98 -> Plus
X 11090866..11090977 237..348 100 -> Plus
X 11091051..11091192 349..490 100 -> Plus
X 11091291..11091468 491..668 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:31:46 Download gff for BO16429.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10984605..10984831 9..236 98 -> Plus
arm_X 10984899..10985010 237..348 100 -> Plus
arm_X 10985084..10985225 349..490 100 -> Plus
arm_X 10985324..10985501 491..668 100   Plus

BO16429.complete Sequence

1057 bp assembled on 2006-10-11

GenBank Submission: FJ633828

> BO16429.complete
GAAGTTATCAGTCGACATGTTGCTGCGTCTAGCACTTTCCACCGCCCGTC
CAGCCGGGGCTATCAAGATCCTGGCCCAGTCTCCGGCCCAGCTGTTCCGG
GCCAATGCCAATCCCAATCTGAATCTCTCCACGGTGCGCACCTACGCCCG
CAGGGTGGTTCGCACCCGTGAGCCCGTCGAAGAGATGCGTGCTCCCTCGC
TGAAGGAGAAACTGATGGGTCCGCCAAGTGCCAATGCATACTCCATGGGC
AAGGGCGCTGCCGCCGGAGCAGCCGCCGTGGGATTGGGCGCCCTGTGCTA
CTACGGCGTGGGATTGGGAAAACAAACCAGCATCGCGGATAATGCCATCA
TGTGGCCCCAGTTTGTGCGCGATCGTATCCAGAGCACCTATGCCTTTTTC
GGTGGCTCTTGCGTTCTCACCGCGGCCGCAGCAGCAGCCACCTTCCGTTC
GCACCGTCTCCTGGAGCTGGCCTCGCGTGGCGGCATCTTGGCGACCATTG
CTTCGCTGGCGCTGGTCATTGGTAGTGGAGCAGTTGCCCGCTCGATTGAG
TACCAGCCGGGTCTGGGAGCCAAGCATCTGGCCTGGGCGGTGCACTGCGC
CATTCTGGGCGCCGTGATCGCACCCATTTGCTTCATGGGCGGACCGATTT
TGACGCGCGCCGCTCTCTACACGGGCGGCATTGTTGGTGGCTTGTCCACG
ATCGCCGCGTGTGCACCCAGCGATAAGTTCCTCTACATGGGCGGCCCACT
GGCCATTGGCTTGGGCGTGGTGTTCGCCTCCTCGCTGGCATCCATGTGGC
TGCCGCCCACCACGGCGCTGGGCGCAGGTCTGGCCTCCATGTCCCTATAT
GGCGGCCTCGTCCTCTTCAGTGGCTTCCTGCTCTATGACACTCAGCGCAT
GGTCCGTCGCGCTGAGGTCTATCCCCAGTACAGCTACACTCCCTACGATC
CAATCAACGCCTCAATGTCGATCTACATGGACGTGCTGAACATATTCATC
CGCATCGTTACCATTCTGAGTGGTGGTCAGCGCAGGAAGGCAAGCTTTCT
AGACCAT

BO16429.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG2076-RB 1026 CG2076-PB 1..1023 17..1039 5115 100 Plus
CG2076-RA 1026 CG2076-PA 1..1023 17..1039 5115 100 Plus
CG1287-RA 1098 CG1287-PA 607..1060 554..1007 545 74.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2076-RB 1491 CG2076-RB 370..1392 17..1039 5115 100 Plus
CG2076-RA 1319 CG2076-RA 198..1220 17..1039 5115 100 Plus
CG1287-RA 1426 CG1287-RA 740..1193 554..1007 545 74.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11091290..11091629 490..829 1700 100 Plus
X 23542271 X 11090579..11090798 17..236 1100 100 Plus
X 23542271 X 11091051..11091193 349..491 715 100 Plus
X 23542271 X 11091720..11091857 823..960 690 100 Plus
X 23542271 X 11090865..11090977 236..348 565 100 Plus
3R 32079331 3R 7501184..7501637 1007..554 545 74.7 Minus
X 23542271 X 11091921..11091999 961..1039 395 100 Plus
Blast to na_te.dros performed 2014-11-27 23:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsil\Loa 7779 Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). 3163..3242 845..764 135 64.6 Minus

BO16429.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:43 Download gff for BO16429.complete
Subject Subject Range Query Range Percent Splice Strand
CG2076-RA 1..1026 17..1042 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:16 Download gff for BO16429.complete
Subject Subject Range Query Range Percent Splice Strand
CG2076-RA 192..1226 9..1045 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:19 Download gff for BO16429.complete
Subject Subject Range Query Range Percent Splice Strand
CG2076-RA 203..1220 22..1041 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:43 Download gff for BO16429.complete
Subject Subject Range Query Range Percent Splice Strand
CG2076-RA 192..1226 9..1045 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:16 Download gff for BO16429.complete
Subject Subject Range Query Range Percent Splice Strand
CG2076-RA 203..1220 22..1041 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:16 Download gff for BO16429.complete
Subject Subject Range Query Range Percent Splice Strand
X 11090584..11090798 22..236 100 -> Plus
X 11090866..11090977 237..348 100 -> Plus
X 11091051..11091192 349..490 100 -> Plus
X 11091291..11091627 491..827 100 -> Plus
X 11091725..11091857 828..960 100 -> Plus
X 11091921..11091999 961..1041 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:19 Download gff for BO16429.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10984617..10984831 22..236 100 -> Plus
arm_X 10984899..10985010 237..348 100 -> Plus
arm_X 10985084..10985225 349..490 100 -> Plus
arm_X 10985324..10985660 491..827 100 -> Plus
arm_X 10985758..10985890 828..960 100 -> Plus
arm_X 10985954..10986032 961..1041 97   Plus

BO16429.pep Sequence

Translation from 16 to 1057

> BO16429.pep
MLLRLALSTARPAGAIKILAQSPAQLFRANANPNLNLSTVRTYARRVVRT
REPVEEMRAPSLKEKLMGPPSANAYSMGKGAAAGAAAVGLGALCYYGVGL
GKQTSIADNAIMWPQFVRDRIQSTYAFFGGSCVLTAAAAAATFRSHRLLE
LASRGGILATIASLALVIGSGAVARSIEYQPGLGAKHLAWAVHCAILGAV
IAPICFMGGPILTRAALYTGGIVGGLSTIAACAPSDKFLYMGGPLAIGLG
VVFASSLASMWLPPTTALGAGLASMSLYGGLVLFSGFLLYDTQRMVRRAE
VYPQYSYTPYDPINASMSIYMDVLNIFIRIVTILSGGQRRKASFLDH

BO16429.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG2076-PB 341 CG2076-PB 1..341 1..341 1718 100 Plus
CG2076-PA 341 CG2076-PA 1..341 1..341 1718 100 Plus
CG1287-PA 365 CG1287-PA 55..364 34..341 1089 67.1 Plus
BI-1-PB 237 CG7188-PB 26..229 116..335 155 26.2 Plus