Clone Sequence Records
BO16429.3prime Sequence
595 bp (519 high quality bases) assembled on 2006-10-13
> BO16429.3prime
ATGGTCTAGAAAGCTTGCCTTCCTGCGCTGACCACCACTCAGAATGGTAA
CGATGCGGATGAATATGTTCAGCACGTCCATGTAGATCGACATTGAGGCG
TTGATTGGATCGTAGGGAGTGTAGCTGTACTGGGGATAGACCTCAGCGCG
ACGGACCATGCGCTGAGTGTCATAGAGCAGGAAGCCACTGAAGAGGACGA
GGCCGCCATATAGGGACATGGAGGCCAGACCTGCGCCCAGCGCCGTGGTG
GGCGGCAGCCACATGGATGCCAGCGAGGAGGCGAACACCACGCCCAAGCC
AATGGCCAGTGGGCCGCCCATGTAGAGGAACTTATCGCTGGGTGCACACG
CGGCGATCGTGGACAAGCCACCAACAATGCCGCCCGTGTAGAGAGCGGCG
CGCGTCAAAATCGGTCCGCCCATGAAGCAAATGGGTGCGATCACGGCGCC
CAGAATGGCGCAGTGCACCGCCCAGGCCAGATGCTTGGCTCCCAGACCCG
GCTGGTACTCAATCGAGCGGGCAACTGCTCCACTACCAATGACCAGCGCC
AGCGAAGCAATGGTCGCCCAGATGCCGCCCCGCGAGGCCAGCTCC
BO16429.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2076-PA | 1026 | CG2076-RA | 447..1023 | 595..19 | 2835 | 99.6 | Minus |
CG1287-PA | 1098 | CG1287-RA | 790..863 | 321..248 | 195 | 90.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:46:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2076-RB | 1491 | CG2076-RB | 816..1392 | 595..19 | 2855 | 99.7 | Minus |
CG2076-RA | 1319 | CG2076-RA | 644..1220 | 595..19 | 2855 | 99.7 | Minus |
CG1287-RA | 1426 | CG1287-RA | 740..1193 | 504..51 | 605 | 76.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:46:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11091290..11091629 | 568..229 | 1700 | 100 | Minus |
X | 23542271 | X | 11091720..11091857 | 235..98 | 690 | 100 | Minus |
3R | 32079331 | 3R | 7501184..7501637 | 51..504 | 545 | 74.7 | Plus |
X | 23542271 | X | 11091921..11091999 | 97..19 | 395 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 03:46:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 3163..3242 | 213..294 | 135 | 64.6 | Plus |
BO16429.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:12 Download gff for
BO16429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-PA | 447..1026 | 16..595 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:29:26 Download gff for
BO16429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-RA | 644..1225 | 13..595 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:39 Download gff for
BO16429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-RA | 644..1225 | 13..595 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:39 Download gff for
BO16429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11091165..11091192 | 568..595 | 92 | -> | Minus |
X | 11091291..11091627 | 231..567 | 100 | -> | Minus |
X | 11091725..11091857 | 98..230 | 100 | -> | Minus |
X | 11091921..11092004 | 13..97 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:29:26 Download gff for
BO16429.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10985198..10985225 | 568..595 | 92 | -> | Minus |
arm_X | 10985324..10985660 | 231..567 | 100 | -> | Minus |
arm_X | 10985758..10985890 | 98..230 | 100 | -> | Minus |
arm_X | 10985954..10986037 | 13..97 | 96 | | Minus |
BO16429.5prime Sequence
669 bp (579 high quality bases) assembled on 2006-10-13
> BO16429.5prime
GAAGTTATCAGTCGACATGTTGCTGCGTCTAGCACTTTCCACCGCCCGTC
CAGCCGGGGCTATCAAGATCCTGGCCCAGTCTCCGGCCCAGCTGTTCCGG
GCCAATGCCAATCCCAATCTGAATCTCTCCACGGTGCGCACCTACGCCCG
CAGGGTGGTTCGCACCCGTGAGCCCGTCGAAGAGATGCGTGCTCCCTCGC
TGAAGGAGAAACTGATGGGTCCGCCAAGTGCCAATGCATACTCCATGGGC
AAGGGCGCTGCCGCCGGAGCAGCCGCCGTGGGATTGGGCGCCCTGTGCTA
CTACGGCGTGGGATTGGGAAAACAAACCAGCATCGCGGATAATGCCATCA
TGTGGCCCCAGTTTGTGCGCGATCGTATCCAGAGCACCTATGCCTTTTTC
GGTGGCTCTTGCGTTCTCACCGCGGCCGCAGCAGCAGCCACCTTCCGTTC
GCACCGTCTCCTGGAGCTGGCCTCGCGTGGCGGCATCTTGGCGACCATTG
CTTCGCTGGCGCTGGTCATTGGTAGTGGAGCAGTTGCCCGCTCGATTGAG
TACCAGCCGGGTCTGGGAGCCAAGCATCTGGCCTGGGCGGTGCACTGCGC
CATTCTGGGCGCCGTGATCGCACCCATTTGCTTCATGGGCGGACCGATTT
TGACGCGCGCCGCTCTCTA
BO16429.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2076-PA | 1026 | CG2076-RA | 1..653 | 17..669 | 3265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2076-RB | 1491 | CG2076-RB | 370..1022 | 17..669 | 3265 | 100 | Plus |
CG2076-RA | 1319 | CG2076-RA | 198..850 | 17..669 | 3265 | 100 | Plus |
CG1287-RA | 1426 | CG1287-RA | 740..840 | 554..654 | 205 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11090579..11090798 | 17..236 | 1100 | 100 | Plus |
X | 23542271 | X | 11091290..11091469 | 490..669 | 900 | 100 | Plus |
X | 23542271 | X | 11091051..11091193 | 349..491 | 715 | 100 | Plus |
X | 23542271 | X | 11090865..11090977 | 236..348 | 565 | 100 | Plus |
3R | 32079331 | 3R | 7501537..7501637 | 654..554 | 205 | 80.2 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:02:20 has no hits.
BO16429.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:14 Download gff for
BO16429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-PA | 1..652 | 17..668 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:31:46 Download gff for
BO16429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-RA | 191..849 | 9..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:41:33 Download gff for
BO16429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-RA | 191..849 | 9..668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:41:33 Download gff for
BO16429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11090572..11090798 | 9..236 | 98 | -> | Plus |
X | 11090866..11090977 | 237..348 | 100 | -> | Plus |
X | 11091051..11091192 | 349..490 | 100 | -> | Plus |
X | 11091291..11091468 | 491..668 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:31:46 Download gff for
BO16429.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10984605..10984831 | 9..236 | 98 | -> | Plus |
arm_X | 10984899..10985010 | 237..348 | 100 | -> | Plus |
arm_X | 10985084..10985225 | 349..490 | 100 | -> | Plus |
arm_X | 10985324..10985501 | 491..668 | 100 | | Plus |
BO16429.complete Sequence
1057 bp assembled on 2006-10-11
GenBank Submission: FJ633828
> BO16429.complete
GAAGTTATCAGTCGACATGTTGCTGCGTCTAGCACTTTCCACCGCCCGTC
CAGCCGGGGCTATCAAGATCCTGGCCCAGTCTCCGGCCCAGCTGTTCCGG
GCCAATGCCAATCCCAATCTGAATCTCTCCACGGTGCGCACCTACGCCCG
CAGGGTGGTTCGCACCCGTGAGCCCGTCGAAGAGATGCGTGCTCCCTCGC
TGAAGGAGAAACTGATGGGTCCGCCAAGTGCCAATGCATACTCCATGGGC
AAGGGCGCTGCCGCCGGAGCAGCCGCCGTGGGATTGGGCGCCCTGTGCTA
CTACGGCGTGGGATTGGGAAAACAAACCAGCATCGCGGATAATGCCATCA
TGTGGCCCCAGTTTGTGCGCGATCGTATCCAGAGCACCTATGCCTTTTTC
GGTGGCTCTTGCGTTCTCACCGCGGCCGCAGCAGCAGCCACCTTCCGTTC
GCACCGTCTCCTGGAGCTGGCCTCGCGTGGCGGCATCTTGGCGACCATTG
CTTCGCTGGCGCTGGTCATTGGTAGTGGAGCAGTTGCCCGCTCGATTGAG
TACCAGCCGGGTCTGGGAGCCAAGCATCTGGCCTGGGCGGTGCACTGCGC
CATTCTGGGCGCCGTGATCGCACCCATTTGCTTCATGGGCGGACCGATTT
TGACGCGCGCCGCTCTCTACACGGGCGGCATTGTTGGTGGCTTGTCCACG
ATCGCCGCGTGTGCACCCAGCGATAAGTTCCTCTACATGGGCGGCCCACT
GGCCATTGGCTTGGGCGTGGTGTTCGCCTCCTCGCTGGCATCCATGTGGC
TGCCGCCCACCACGGCGCTGGGCGCAGGTCTGGCCTCCATGTCCCTATAT
GGCGGCCTCGTCCTCTTCAGTGGCTTCCTGCTCTATGACACTCAGCGCAT
GGTCCGTCGCGCTGAGGTCTATCCCCAGTACAGCTACACTCCCTACGATC
CAATCAACGCCTCAATGTCGATCTACATGGACGTGCTGAACATATTCATC
CGCATCGTTACCATTCTGAGTGGTGGTCAGCGCAGGAAGGCAAGCTTTCT
AGACCAT
BO16429.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2076-RB | 1026 | CG2076-PB | 1..1023 | 17..1039 | 5115 | 100 | Plus |
CG2076-RA | 1026 | CG2076-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
CG1287-RA | 1098 | CG1287-PA | 607..1060 | 554..1007 | 545 | 74.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2076-RB | 1491 | CG2076-RB | 370..1392 | 17..1039 | 5115 | 100 | Plus |
CG2076-RA | 1319 | CG2076-RA | 198..1220 | 17..1039 | 5115 | 100 | Plus |
CG1287-RA | 1426 | CG1287-RA | 740..1193 | 554..1007 | 545 | 74.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11091290..11091629 | 490..829 | 1700 | 100 | Plus |
X | 23542271 | X | 11090579..11090798 | 17..236 | 1100 | 100 | Plus |
X | 23542271 | X | 11091051..11091193 | 349..491 | 715 | 100 | Plus |
X | 23542271 | X | 11091720..11091857 | 823..960 | 690 | 100 | Plus |
X | 23542271 | X | 11090865..11090977 | 236..348 | 565 | 100 | Plus |
3R | 32079331 | 3R | 7501184..7501637 | 1007..554 | 545 | 74.7 | Minus |
X | 23542271 | X | 11091921..11091999 | 961..1039 | 395 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 23:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 3163..3242 | 845..764 | 135 | 64.6 | Minus |
BO16429.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:43 Download gff for
BO16429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-RA | 1..1026 | 17..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:16 Download gff for
BO16429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-RA | 192..1226 | 9..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:19 Download gff for
BO16429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-RA | 203..1220 | 22..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:43 Download gff for
BO16429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-RA | 192..1226 | 9..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:16 Download gff for
BO16429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2076-RA | 203..1220 | 22..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:16 Download gff for
BO16429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11090584..11090798 | 22..236 | 100 | -> | Plus |
X | 11090866..11090977 | 237..348 | 100 | -> | Plus |
X | 11091051..11091192 | 349..490 | 100 | -> | Plus |
X | 11091291..11091627 | 491..827 | 100 | -> | Plus |
X | 11091725..11091857 | 828..960 | 100 | -> | Plus |
X | 11091921..11091999 | 961..1041 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:19 Download gff for
BO16429.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10984617..10984831 | 22..236 | 100 | -> | Plus |
arm_X | 10984899..10985010 | 237..348 | 100 | -> | Plus |
arm_X | 10985084..10985225 | 349..490 | 100 | -> | Plus |
arm_X | 10985324..10985660 | 491..827 | 100 | -> | Plus |
arm_X | 10985758..10985890 | 828..960 | 100 | -> | Plus |
arm_X | 10985954..10986032 | 961..1041 | 97 | | Plus |
BO16429.pep Sequence
Translation from 16 to 1057
> BO16429.pep
MLLRLALSTARPAGAIKILAQSPAQLFRANANPNLNLSTVRTYARRVVRT
REPVEEMRAPSLKEKLMGPPSANAYSMGKGAAAGAAAVGLGALCYYGVGL
GKQTSIADNAIMWPQFVRDRIQSTYAFFGGSCVLTAAAAAATFRSHRLLE
LASRGGILATIASLALVIGSGAVARSIEYQPGLGAKHLAWAVHCAILGAV
IAPICFMGGPILTRAALYTGGIVGGLSTIAACAPSDKFLYMGGPLAIGLG
VVFASSLASMWLPPTTALGAGLASMSLYGGLVLFSGFLLYDTQRMVRRAE
VYPQYSYTPYDPINASMSIYMDVLNIFIRIVTILSGGQRRKASFLDH
BO16429.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2076-PB | 341 | CG2076-PB | 1..341 | 1..341 | 1718 | 100 | Plus |
CG2076-PA | 341 | CG2076-PA | 1..341 | 1..341 | 1718 | 100 | Plus |
CG1287-PA | 365 | CG1287-PA | 55..364 | 34..341 | 1089 | 67.1 | Plus |
BI-1-PB | 237 | CG7188-PB | 26..229 | 116..335 | 155 | 26.2 | Plus |