Clone BO16430 Report

Search the DGRC for BO16430

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG2812-RA
Protein status:BO16430.pep: validated full length
Sequenced Size:1078

Clone Sequence Records

BO16430.3prime Sequence

638 bp (637 high quality bases) assembled on 2006-10-13

> BO16430.3prime
ATGGTCTAGAAAGCTTGCCGAGGGCGGCAGCGCCCAGAGGGTGGCCGTCT
TGTCCGCCGACGTGGAGATGAAGGAGAACTCGGTCGGATGCCATCGGATG
GTGATGGCCTTGTCCTTGTGCTCCGCCACCACCACGGAGGACAGCTCGTG
GGCCAGGTCGCCTTGCAGGTCCGTCAGCCGGATCGAGTTGTCGTAGCTGC
ACGTCAGCATGTAGTAGGCGGATGGGGAGAATCGGACGCACCTTATTTCA
GCGGTGTGCGGATAGAAGCGCTGAATGGGCCGGTTGCCACGGATGTCGTA
CAGAGTACAGGAGCTGTCAGCGTGCCCAGAGACTAGCAGCCTGCCGGTGG
GATCTACACAGACCGCGGTTACAGCGGAGCTCTCCAGACCACCATCCTTT
CGATCGTTATCCAGCGTATTCACAGAGACATTCACTCGCAGATCCCAGAA
ACGTATCGTTTGATCCTGCGATCCCGACACGAACATCGCGTTGTTCCAGC
TGTAGAGGGACAGGATGTGGCCAGTATGACCACTGTAGGCCTGGAAGGGA
GTGCCGGTTCCGCAGTCTGTGATGTAGATCTTGCAGTCCCCGGCGCCGCC
GCTCGCCAGCAGCCGGGACTTGGTGGACGAGTCGTCCA

BO16430.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG2812-PA 1047 CG2812-RA 425..1044 638..19 3100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2812-RA 1325 CG2812-RA 578..1197 638..19 3100 100 Minus
Ca-P60A-RI 6306 CG3725-RI 4881..5109 240..468 1145 100 Plus
Ca-P60A-RI 6306 CG3725-RI 4600..4825 19..244 1130 100 Plus
Ca-P60A-RI 6306 CG3725-RI 5171..5344 465..638 870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23926274..23926502 468..240 1145 100 Minus
2R 25286936 2R 23926558..23926783 244..19 1130 100 Minus
2R 25286936 2R 23926039..23926212 638..465 870 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:04:55 has no hits.

BO16430.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:15 Download gff for BO16430.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2812-PA 426..1047 18..637 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:24 Download gff for BO16430.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 579..1202 12..637 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:21 Download gff for BO16430.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 579..1202 12..637 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:21 Download gff for BO16430.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23926040..23926211 466..637 100 -> Minus
2R 23926277..23926500 242..465 100 -> Minus
2R 23926561..23926788 12..241 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:24 Download gff for BO16430.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19813563..19813734 466..637 100 -> Minus
arm_2R 19813800..19814023 242..465 100 -> Minus
arm_2R 19814084..19814311 12..241 98   Minus

BO16430.5prime Sequence

677 bp (609 high quality bases) assembled on 2006-10-13

> BO16430.5prime
GAAGTTATCAGTCGACATGAATCCGGAATCGAGGGACCTGGATTTGAGAA
AGGGCGATGTCGAGAGGCCGCACTTCGAGGCGGTTACCACACTGTCCGAC
TCGCAGGCGATCCGGAGCGTCGACTTTCATCCGAATGGAAAGTTGTACGC
GGTGGGCTCCAACTCCAAGACCTTCCGCATCTGCCAGTACCCCGCGCTGT
CCAAGCTGAGACATGGACACCAGGCAGCGGTGTATCCCCCGTCCGTTCTC
TGCAAGCGCACGAAACACCATCGGGGCTCCATATACTGCACCTGCTGGTC
ACGGGATGGGGAGCTAATTGCCACCGGATCGAACGACAAGACCATCAAGT
ACATGCGCTTCAACAACGACACCAACCAGCTGGTGGGACACGAGATGGAG
CTGAACATGCACGACGGCACGGTGCGGGACATGTGCTTCCTGGACGACTC
GTCCACCAAGTCCCGGCTGCTGGCGAGCGGCGGCGCCGGGGACTGCAAGA
TCTACATCACAGACTGCGGAACCGGCACTCCCTTCCAGGCCTACAGTGGT
CATACTGGCCACATCCTGTCCCTCTACAGCTGGAACAACGCGATGTTCGT
GTCGGGATCGCAGGATCAAACGATACGTTTTCTGGGATCTGCGAGTGAAT
GTCTCTGTGAATACGCTGGATAACGAT

BO16430.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2812-PA 1047 CG2812-RA 1..614 17..630 3070 100 Plus
CG2812-PA 1047 CG2812-RA 612..660 629..677 245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG2812-RA 1325 CG2812-RA 153..813 16..677 3285 99.8 Plus
Ca-P60A-RI 6306 CG3725-RI 5171..5576 614..209 2030 100 Minus
Ca-P60A-RI 6306 CG3725-RI 5644..5803 210..51 800 100 Minus
Ca-P60A-RI 6306 CG3725-RI 5044..5109 677..611 310 98.5 Minus
Ca-P60A-RI 6306 CG3725-RI 5958..5995 53..16 190 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23925807..23926212 209..614 2030 100 Plus
2R 25286936 2R 23925580..23925739 51..210 800 100 Plus
2R 25286936 2R 23926274..23926339 611..677 285 98.5 Plus
2R 25286936 2R 23925388..23925425 16..53 190 100 Plus
Blast to na_te.dros performed 2015-02-06 10:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2924..2967 333..376 121 75 Plus

BO16430.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:16 Download gff for BO16430.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2812-PA 1..660 17..677 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:31 Download gff for BO16430.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 149..813 9..677 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:03 Download gff for BO16430.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 149..813 9..677 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:03 Download gff for BO16430.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23925582..23925739 53..210 100 -> Plus
2R 23925809..23926211 211..613 100 -> Plus
2R 23926277..23926339 614..677 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:31 Download gff for BO16430.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19813105..19813262 53..210 100 -> Plus
arm_2R 19813332..19813734 211..613 100 -> Plus
arm_2R 19813800..19813862 614..677 98   Plus

BO16430.complete Sequence

1078 bp assembled on 2006-10-11

GenBank Submission: FJ633829

> BO16430.complete
GAAGTTATCAGTCGACATGAATCCGGAATCGAGGGACCTGGATTTGAGAA
AGGGCGATGTCGAGAGGCCGCACTTCGAGGCGGTTACCACACTGTCCGAC
TCGCAGGCGATCCGGAGCGTCGACTTTCATCCGAATGGAAAGTTGTACGC
GGTGGGCTCCAACTCCAAGACCTTCCGCATCTGCCAGTACCCCGCGCTGT
CCAAGCTGAGACATGGACACCAGGCAGCGGTGTATCCCCCGTCCGTTCTC
TGCAAGCGCACGAAACACCATCGGGGCTCCATATACTGCACCTGCTGGTC
ACGGGATGGGGAGCTAATTGCCACCGGATCGAACGACAAGACCATCAAGT
ACATGCGCTTCAACAACGACACCAACCAGCTGGTGGGACACGAGATGGAG
CTGAACATGCACGACGGCACGGTGCGGGACATGTGCTTCCTGGACGACTC
GTCCACCAAGTCCCGGCTGCTGGCGAGCGGCGGCGCCGGGGACTGCAAGA
TCTACATCACAGACTGCGGAACCGGCACTCCCTTCCAGGCCTACAGTGGT
CATACTGGCCACATCCTGTCCCTCTACAGCTGGAACAACGCGATGTTCGT
GTCGGGATCGCAGGATCAAACGATACGTTTCTGGGATCTGCGAGTGAATG
TCTCTGTGAATACGCTGGATAACGATCGAAAGGATGGTGGTCTGGAGAGC
TCCGCTGTAACCGCGGTCTGTGTAGATCCCACCGGCAGGCTGCTAGTCTC
TGGGCACGCTGACAGCTCCTGTACTCTGTACGACATCCGTGGCAACCGGC
CCATTCAGCGCTTCTATCCGCACACCGCTGAAATAAGGTGCGTCCGATTC
TCCCCATCCGCCTACTACATGCTGACGTGCAGCTACGACAACTCGATCCG
GCTGACGGACCTGCAAGGCGACCTGGCCCACGAGCTGTCCTCCGTGGTGG
TGGCGGAGCACAAGGACAAGGCCATCACCATCCGATGGCATCCGACCGAG
TTCTCCTTCATCTCCACGTCGGCGGACAAGACGGCCACCCTCTGGGCGCT
GCCGCCCTCGGCAAGCTTTCTAGACCAT

BO16430.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG2812-RA 1047 CG2812-PA 1..1044 17..1060 5220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2812-RA 1325 CG2812-RA 153..1197 16..1060 5225 100 Plus
Ca-P60A-RI 6306 CG3725-RI 5171..5576 614..209 2030 100 Minus
Ca-P60A-RI 6306 CG3725-RI 4881..5109 839..611 1145 100 Minus
Ca-P60A-RI 6306 CG3725-RI 4600..4825 1060..835 1130 100 Minus
Ca-P60A-RI 6306 CG3725-RI 5644..5803 210..51 800 100 Minus
Ca-P60A-RI 6306 CG3725-RI 5958..5995 53..16 190 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23925807..23926212 209..614 2030 100 Plus
2R 25286936 2R 23926274..23926502 611..839 1145 100 Plus
2R 25286936 2R 23926558..23926783 835..1060 1130 100 Plus
2R 25286936 2R 23925580..23925739 51..210 800 100 Plus
2R 25286936 2R 23925388..23925425 16..53 190 100 Plus
Blast to na_te.dros performed 2014-11-27 20:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2924..2967 333..376 121 75 Plus

BO16430.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:45 Download gff for BO16430.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 1..1047 17..1061 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:18 Download gff for BO16430.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 146..1199 9..1067 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:12 Download gff for BO16430.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 154..1197 17..1062 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:45 Download gff for BO16430.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 146..1199 9..1067 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:01 Download gff for BO16430.complete
Subject Subject Range Query Range Percent Splice Strand
CG2812-RA 154..1197 17..1062 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:01 Download gff for BO16430.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23925389..23925424 17..52 100 -> Plus
2R 23925582..23925739 53..210 100 -> Plus
2R 23925809..23926211 211..613 100 -> Plus
2R 23926277..23926500 614..837 100 -> Plus
2R 23926561..23926783 838..1062 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:12 Download gff for BO16430.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19812912..19812947 17..52 100 -> Plus
arm_2R 19813105..19813262 53..210 100 -> Plus
arm_2R 19813332..19813734 211..613 100 -> Plus
arm_2R 19813800..19814023 614..837 100 -> Plus
arm_2R 19814084..19814306 838..1062 99   Plus

BO16430.pep Sequence

Translation from 16 to 1078

> BO16430.pep
MNPESRDLDLRKGDVERPHFEAVTTLSDSQAIRSVDFHPNGKLYAVGSNS
KTFRICQYPALSKLRHGHQAAVYPPSVLCKRTKHHRGSIYCTCWSRDGEL
IATGSNDKTIKYMRFNNDTNQLVGHEMELNMHDGTVRDMCFLDDSSTKSR
LLASGGAGDCKIYITDCGTGTPFQAYSGHTGHILSLYSWNNAMFVSGSQD
QTIRFWDLRVNVSVNTLDNDRKDGGLESSAVTAVCVDPTGRLLVSGHADS
SCTLYDIRGNRPIQRFYPHTAEIRCVRFSPSAYYMLTCSYDNSIRLTDLQ
GDLAHELSSVVVAEHKDKAITIRWHPTEFSFISTSADKTATLWALPPSAS
FLDH

BO16430.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG2812-PA 348 CG2812-PA 1..348 1..348 1868 100 Plus
CG3436-PC 347 CG3436-PC 54..301 85..343 215 25.3 Plus
CG3436-PA 347 CG3436-PA 54..301 85..343 215 25.3 Plus
wds-PB 361 CG17437-PB 59..357 17..343 194 24 Plus
wds-PA 361 CG17437-PA 59..357 17..343 194 24 Plus