Clone Sequence Records
BO16430.3prime Sequence
638 bp (637 high quality bases) assembled on 2006-10-13
> BO16430.3prime
ATGGTCTAGAAAGCTTGCCGAGGGCGGCAGCGCCCAGAGGGTGGCCGTCT
TGTCCGCCGACGTGGAGATGAAGGAGAACTCGGTCGGATGCCATCGGATG
GTGATGGCCTTGTCCTTGTGCTCCGCCACCACCACGGAGGACAGCTCGTG
GGCCAGGTCGCCTTGCAGGTCCGTCAGCCGGATCGAGTTGTCGTAGCTGC
ACGTCAGCATGTAGTAGGCGGATGGGGAGAATCGGACGCACCTTATTTCA
GCGGTGTGCGGATAGAAGCGCTGAATGGGCCGGTTGCCACGGATGTCGTA
CAGAGTACAGGAGCTGTCAGCGTGCCCAGAGACTAGCAGCCTGCCGGTGG
GATCTACACAGACCGCGGTTACAGCGGAGCTCTCCAGACCACCATCCTTT
CGATCGTTATCCAGCGTATTCACAGAGACATTCACTCGCAGATCCCAGAA
ACGTATCGTTTGATCCTGCGATCCCGACACGAACATCGCGTTGTTCCAGC
TGTAGAGGGACAGGATGTGGCCAGTATGACCACTGTAGGCCTGGAAGGGA
GTGCCGGTTCCGCAGTCTGTGATGTAGATCTTGCAGTCCCCGGCGCCGCC
GCTCGCCAGCAGCCGGGACTTGGTGGACGAGTCGTCCA
BO16430.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2812-PA | 1047 | CG2812-RA | 425..1044 | 638..19 | 3100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2812-RA | 1325 | CG2812-RA | 578..1197 | 638..19 | 3100 | 100 | Minus |
Ca-P60A-RI | 6306 | CG3725-RI | 4881..5109 | 240..468 | 1145 | 100 | Plus |
Ca-P60A-RI | 6306 | CG3725-RI | 4600..4825 | 19..244 | 1130 | 100 | Plus |
Ca-P60A-RI | 6306 | CG3725-RI | 5171..5344 | 465..638 | 870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23926274..23926502 | 468..240 | 1145 | 100 | Minus |
2R | 25286936 | 2R | 23926558..23926783 | 244..19 | 1130 | 100 | Minus |
2R | 25286936 | 2R | 23926039..23926212 | 638..465 | 870 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:04:55 has no hits.
BO16430.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:15 Download gff for
BO16430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-PA | 426..1047 | 18..637 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:24 Download gff for
BO16430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-RA | 579..1202 | 12..637 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:21 Download gff for
BO16430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-RA | 579..1202 | 12..637 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:21 Download gff for
BO16430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23926040..23926211 | 466..637 | 100 | -> | Minus |
2R | 23926277..23926500 | 242..465 | 100 | -> | Minus |
2R | 23926561..23926788 | 12..241 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:24 Download gff for
BO16430.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19813563..19813734 | 466..637 | 100 | -> | Minus |
arm_2R | 19813800..19814023 | 242..465 | 100 | -> | Minus |
arm_2R | 19814084..19814311 | 12..241 | 98 | | Minus |
BO16430.5prime Sequence
677 bp (609 high quality bases) assembled on 2006-10-13
> BO16430.5prime
GAAGTTATCAGTCGACATGAATCCGGAATCGAGGGACCTGGATTTGAGAA
AGGGCGATGTCGAGAGGCCGCACTTCGAGGCGGTTACCACACTGTCCGAC
TCGCAGGCGATCCGGAGCGTCGACTTTCATCCGAATGGAAAGTTGTACGC
GGTGGGCTCCAACTCCAAGACCTTCCGCATCTGCCAGTACCCCGCGCTGT
CCAAGCTGAGACATGGACACCAGGCAGCGGTGTATCCCCCGTCCGTTCTC
TGCAAGCGCACGAAACACCATCGGGGCTCCATATACTGCACCTGCTGGTC
ACGGGATGGGGAGCTAATTGCCACCGGATCGAACGACAAGACCATCAAGT
ACATGCGCTTCAACAACGACACCAACCAGCTGGTGGGACACGAGATGGAG
CTGAACATGCACGACGGCACGGTGCGGGACATGTGCTTCCTGGACGACTC
GTCCACCAAGTCCCGGCTGCTGGCGAGCGGCGGCGCCGGGGACTGCAAGA
TCTACATCACAGACTGCGGAACCGGCACTCCCTTCCAGGCCTACAGTGGT
CATACTGGCCACATCCTGTCCCTCTACAGCTGGAACAACGCGATGTTCGT
GTCGGGATCGCAGGATCAAACGATACGTTTTCTGGGATCTGCGAGTGAAT
GTCTCTGTGAATACGCTGGATAACGAT
BO16430.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2812-PA | 1047 | CG2812-RA | 1..614 | 17..630 | 3070 | 100 | Plus |
CG2812-PA | 1047 | CG2812-RA | 612..660 | 629..677 | 245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2812-RA | 1325 | CG2812-RA | 153..813 | 16..677 | 3285 | 99.8 | Plus |
Ca-P60A-RI | 6306 | CG3725-RI | 5171..5576 | 614..209 | 2030 | 100 | Minus |
Ca-P60A-RI | 6306 | CG3725-RI | 5644..5803 | 210..51 | 800 | 100 | Minus |
Ca-P60A-RI | 6306 | CG3725-RI | 5044..5109 | 677..611 | 310 | 98.5 | Minus |
Ca-P60A-RI | 6306 | CG3725-RI | 5958..5995 | 53..16 | 190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23925807..23926212 | 209..614 | 2030 | 100 | Plus |
2R | 25286936 | 2R | 23925580..23925739 | 51..210 | 800 | 100 | Plus |
2R | 25286936 | 2R | 23926274..23926339 | 611..677 | 285 | 98.5 | Plus |
2R | 25286936 | 2R | 23925388..23925425 | 16..53 | 190 | 100 | Plus |
Blast to na_te.dros performed 2015-02-06 10:08:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2924..2967 | 333..376 | 121 | 75 | Plus |
BO16430.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:16 Download gff for
BO16430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-PA | 1..660 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:38:31 Download gff for
BO16430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-RA | 149..813 | 9..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:03 Download gff for
BO16430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-RA | 149..813 | 9..677 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:03 Download gff for
BO16430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23925582..23925739 | 53..210 | 100 | -> | Plus |
2R | 23925809..23926211 | 211..613 | 100 | -> | Plus |
2R | 23926277..23926339 | 614..677 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:38:31 Download gff for
BO16430.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19813105..19813262 | 53..210 | 100 | -> | Plus |
arm_2R | 19813332..19813734 | 211..613 | 100 | -> | Plus |
arm_2R | 19813800..19813862 | 614..677 | 98 | | Plus |
BO16430.complete Sequence
1078 bp assembled on 2006-10-11
GenBank Submission: FJ633829
> BO16430.complete
GAAGTTATCAGTCGACATGAATCCGGAATCGAGGGACCTGGATTTGAGAA
AGGGCGATGTCGAGAGGCCGCACTTCGAGGCGGTTACCACACTGTCCGAC
TCGCAGGCGATCCGGAGCGTCGACTTTCATCCGAATGGAAAGTTGTACGC
GGTGGGCTCCAACTCCAAGACCTTCCGCATCTGCCAGTACCCCGCGCTGT
CCAAGCTGAGACATGGACACCAGGCAGCGGTGTATCCCCCGTCCGTTCTC
TGCAAGCGCACGAAACACCATCGGGGCTCCATATACTGCACCTGCTGGTC
ACGGGATGGGGAGCTAATTGCCACCGGATCGAACGACAAGACCATCAAGT
ACATGCGCTTCAACAACGACACCAACCAGCTGGTGGGACACGAGATGGAG
CTGAACATGCACGACGGCACGGTGCGGGACATGTGCTTCCTGGACGACTC
GTCCACCAAGTCCCGGCTGCTGGCGAGCGGCGGCGCCGGGGACTGCAAGA
TCTACATCACAGACTGCGGAACCGGCACTCCCTTCCAGGCCTACAGTGGT
CATACTGGCCACATCCTGTCCCTCTACAGCTGGAACAACGCGATGTTCGT
GTCGGGATCGCAGGATCAAACGATACGTTTCTGGGATCTGCGAGTGAATG
TCTCTGTGAATACGCTGGATAACGATCGAAAGGATGGTGGTCTGGAGAGC
TCCGCTGTAACCGCGGTCTGTGTAGATCCCACCGGCAGGCTGCTAGTCTC
TGGGCACGCTGACAGCTCCTGTACTCTGTACGACATCCGTGGCAACCGGC
CCATTCAGCGCTTCTATCCGCACACCGCTGAAATAAGGTGCGTCCGATTC
TCCCCATCCGCCTACTACATGCTGACGTGCAGCTACGACAACTCGATCCG
GCTGACGGACCTGCAAGGCGACCTGGCCCACGAGCTGTCCTCCGTGGTGG
TGGCGGAGCACAAGGACAAGGCCATCACCATCCGATGGCATCCGACCGAG
TTCTCCTTCATCTCCACGTCGGCGGACAAGACGGCCACCCTCTGGGCGCT
GCCGCCCTCGGCAAGCTTTCTAGACCAT
BO16430.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2812-RA | 1047 | CG2812-PA | 1..1044 | 17..1060 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:40:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2812-RA | 1325 | CG2812-RA | 153..1197 | 16..1060 | 5225 | 100 | Plus |
Ca-P60A-RI | 6306 | CG3725-RI | 5171..5576 | 614..209 | 2030 | 100 | Minus |
Ca-P60A-RI | 6306 | CG3725-RI | 4881..5109 | 839..611 | 1145 | 100 | Minus |
Ca-P60A-RI | 6306 | CG3725-RI | 4600..4825 | 1060..835 | 1130 | 100 | Minus |
Ca-P60A-RI | 6306 | CG3725-RI | 5644..5803 | 210..51 | 800 | 100 | Minus |
Ca-P60A-RI | 6306 | CG3725-RI | 5958..5995 | 53..16 | 190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23925807..23926212 | 209..614 | 2030 | 100 | Plus |
2R | 25286936 | 2R | 23926274..23926502 | 611..839 | 1145 | 100 | Plus |
2R | 25286936 | 2R | 23926558..23926783 | 835..1060 | 1130 | 100 | Plus |
2R | 25286936 | 2R | 23925580..23925739 | 51..210 | 800 | 100 | Plus |
2R | 25286936 | 2R | 23925388..23925425 | 16..53 | 190 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 20:40:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2924..2967 | 333..376 | 121 | 75 | Plus |
BO16430.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:45 Download gff for
BO16430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-RA | 1..1047 | 17..1061 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:18 Download gff for
BO16430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-RA | 146..1199 | 9..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:12 Download gff for
BO16430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-RA | 154..1197 | 17..1062 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:45 Download gff for
BO16430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-RA | 146..1199 | 9..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:01 Download gff for
BO16430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2812-RA | 154..1197 | 17..1062 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:01 Download gff for
BO16430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23925389..23925424 | 17..52 | 100 | -> | Plus |
2R | 23925582..23925739 | 53..210 | 100 | -> | Plus |
2R | 23925809..23926211 | 211..613 | 100 | -> | Plus |
2R | 23926277..23926500 | 614..837 | 100 | -> | Plus |
2R | 23926561..23926783 | 838..1062 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:12 Download gff for
BO16430.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19812912..19812947 | 17..52 | 100 | -> | Plus |
arm_2R | 19813105..19813262 | 53..210 | 100 | -> | Plus |
arm_2R | 19813332..19813734 | 211..613 | 100 | -> | Plus |
arm_2R | 19813800..19814023 | 614..837 | 100 | -> | Plus |
arm_2R | 19814084..19814306 | 838..1062 | 99 | | Plus |
BO16430.pep Sequence
Translation from 16 to 1078
> BO16430.pep
MNPESRDLDLRKGDVERPHFEAVTTLSDSQAIRSVDFHPNGKLYAVGSNS
KTFRICQYPALSKLRHGHQAAVYPPSVLCKRTKHHRGSIYCTCWSRDGEL
IATGSNDKTIKYMRFNNDTNQLVGHEMELNMHDGTVRDMCFLDDSSTKSR
LLASGGAGDCKIYITDCGTGTPFQAYSGHTGHILSLYSWNNAMFVSGSQD
QTIRFWDLRVNVSVNTLDNDRKDGGLESSAVTAVCVDPTGRLLVSGHADS
SCTLYDIRGNRPIQRFYPHTAEIRCVRFSPSAYYMLTCSYDNSIRLTDLQ
GDLAHELSSVVVAEHKDKAITIRWHPTEFSFISTSADKTATLWALPPSAS
FLDH
BO16430.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2812-PA | 348 | CG2812-PA | 1..348 | 1..348 | 1868 | 100 | Plus |
CG3436-PC | 347 | CG3436-PC | 54..301 | 85..343 | 215 | 25.3 | Plus |
CG3436-PA | 347 | CG3436-PA | 54..301 | 85..343 | 215 | 25.3 | Plus |
wds-PB | 361 | CG17437-PB | 59..357 | 17..343 | 194 | 24 | Plus |
wds-PA | 361 | CG17437-PA | 59..357 | 17..343 | 194 | 24 | Plus |