Clone BO16432 Report

Search the DGRC for BO16432

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptSpf45-RB
Protein status:BO16432.pep:
Sequenced Size:1147

Clone Sequence Records

BO16432.3prime Sequence

838 bp (746 high quality bases) assembled on 2006-10-13

> BO16432.3prime
ATGGTCTAGAAAGCTTGCATGTAATTGGAAACATTTAAACTTATCATAGT
TGTAAAACCCCGCTCGCACTTGACGTCCTCCAAAAAAACGTCCATTAAGG
TCCACTACAGCTTTAATTGCACTTTCGATCCGCCTAAACTCTACGAATAT
TTTAACTGCATCTTCTGGCACAGTTCCGAACGATTCGTGAATGATTACAC
TGTTCACTTCCCCGTACTTGGTGTTGCATTCGTCTTTTACCTCGGGTTCC
AATTCTTCGTCAACGTCCCCGGGTCCTACCATGTTGCGTAGAAGAACAAC
CTTGCTTGGTGATTTCATAATCTCCGTAATGCTGTATCCGATGTCACCAC
TCTCAGCCGCCGTGTCTACCATCTGGGGAGGAGGCATGGCCTTGTGGCTG
GGACTTGTTCCTATTTGGGAGCCAATAGAAGGTGGCGACAATGCTAGGGG
TGGCAGAAAAACGTCTTTTTCGTGTATGATCCGTCCACCACGTTTGGAGG
TTTTCTCTACTTGAAGAGCTATGGCCATGCCCTGCTCCGATTTTCCGAGA
CCTTGACCATCCTTAAACCCATATTTTGCCATAATTTTGGCGGCCACCGA
GCTGGCAGAATATGGCATAGTATTAGTGGCTTCACAACCACTATCAATGG
ACATTTCTTGGAGGGAAGGAGGGGGAGCGATTGTGGCACCTCCCTGTTTA
GCTACAAGGCCCGGAGATGGCAAGTACATGTCATCATCGTTTTGCCGGTG
GGCCAACCCGCTGAGCTTCANGTTAGGGGCTGAGACTTCGTCTCTATAAA
TTCTCGACGACCGACGCGTCCACGTTTACGATCTTTTT

BO16432.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17540-PA 1212 CG17540-RA 428..1209 800..19 3841 99.6 Minus
CG17540-PC 1092 CG17540-RC 308..1089 800..19 3841 99.6 Minus
CG17540-PB 1116 CG17540-RB 332..1113 800..19 3841 99.6 Minus
CG17540-PA 1212 CG17540-RA 389..429 838..798 205 100 Minus
CG17540-PC 1092 CG17540-RC 269..309 838..798 205 100 Minus
CG17540-PB 1116 CG17540-RB 293..333 838..798 205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-RB 1354 CG17540-RB 416..1236 838..19 4039 99.5 Minus
Spf45-RC 1257 CG17540-RC 319..1139 838..19 4039 99.5 Minus
Spf45-RA 1397 CG17540-RA 459..1279 838..19 4039 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:37:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23067145..23067873 111..838 3554 99.5 Plus
2L 23513712 2L 23066992..23067085 19..112 470 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:37:33 has no hits.

BO16432.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:18 Download gff for BO16432.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17540-PB 293..1116 18..838 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:19 Download gff for BO16432.3prime
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 459..1279 19..838 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:37 Download gff for BO16432.3prime
Subject Subject Range Query Range Percent Splice Strand
Spf45-RA 459..1279 19..838 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:37 Download gff for BO16432.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 23066992..23067083 19..110 100 <- Plus
2L 23067145..23067873 111..838 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:19 Download gff for BO16432.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22959724..22959815 19..110 100 <- Plus
arm_2L 22959877..22960605 111..838 99   Plus

BO16432.5prime Sequence

856 bp (753 high quality bases) assembled on 2006-10-13

> BO16432.5prime
GAAGTTATCAGTCGACATGGTCTTCGGGAATAAAAATGTTACAGACCCAG
CTGGCAGTAAAAATGGCTGTCAAAAAACCAATCCAGAAGTTACATGTTTT
GCTCCAATTACTACAGTTGTATCCAAACCATTAATAAGTGGTAAAGCCCT
TCCATCCATACTGGAAAGGATAAACAGGGGGGACTGGGACGTTGCCGATG
AATACGATCCTCAAAGGCCAAATGAATATGAAAAACTTAAAGAGAAAAGT
AATGGCAGTGACAAAAATCGAGCAGGCGTAAGTGATCGAGAAGACCGAGA
TGACAAAGAAAAAGATCGTAAACGTGGACGCGTCGGTCGTCGAGAATTTT
ATAGAGACGAAGTCTCAGCCCCTAACCTGAAGCTCAGCGGGTTTGGCCAC
CGGCAAAACGATGATGACATGTACTTGCCATCTCCGGGCCTTGTAGCTAA
ACAGGGAGGTGCCACAATCGCTCCCCCTCCTTCCCTCCAAGAAATGTCCA
TTGATAGTGGTTGTGAAGCCACTAATACTATGCCATATTCTGCCAGCTCG
GTGGCCGCCAAAATTATGGCAAAATATGGGTTTAAGGATGGTCAAGGTCT
CGGAAAATCGGAGCAGGGCATGGCCATAGCTCTTCAAGTAGAGAAAACCT
CCAAACGTGGTGGACGGATCATACACGAAAAAGACGTTTTTCTGCCACCC
CTAGCATTGTCGCCACCTTCTATTGGCTCCCAAATAGGAACAAGTCCCAG
CCACAAGGCCATGCCTCCTCCCCAGATGGTAGACACGGCGGCTGAGAGTG
GTGACATCGGATACAGCATTACGGAGATTATGAAATCACCAAGCAAGGNT
GTTCTT

BO16432.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17540-PB 1116 CG17540-RB 1..840 17..856 4181 99.8 Plus
CG17540-PA 1212 CG17540-RA 161..936 81..856 3861 99.8 Plus
CG17540-PC 1092 CG17540-RC 41..816 81..856 3861 99.8 Plus
CG17540-PA 1212 CG17540-RA 54..117 17..80 320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-RB 1354 CG17540-RB 124..963 17..856 4189 99.9 Plus
Spf45-RC 1257 CG17540-RC 91..866 81..856 3869 99.9 Plus
Spf45-RA 1397 CG17540-RA 231..1006 81..856 3869 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23067326..23068101 856..81 3869 99.9 Minus
2L 23513712 2L 23068200..23068263 80..17 320 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:22:00 has no hits.

BO16432.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:19 Download gff for BO16432.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17540-PB 1..840 17..856 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:20:53 Download gff for BO16432.5prime
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 124..963 17..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:30 Download gff for BO16432.5prime
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 124..963 17..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:30 Download gff for BO16432.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 23067326..23068101 81..856 99 <- Minus
2L 23068200..23068263 17..80 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:20:53 Download gff for BO16432.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22960058..22960833 81..856 99 <- Minus
arm_2L 22960932..22960995 17..80 100   Minus

BO16432.complete Sequence

1147 bp assembled on 2006-10-11

GenBank Submission: FJ633830

> BO16432.complete
GAAGTTATCAGTCGACATGGTCTTCGGGAATAAAAATGTTACAGACCCAG
CTGGCAGTAAAAATGGCTGTCAAAAAACCAATCCAGAAGTTACATGTTTT
GCTCCAATTACTACAGTTGTATCCAAACCATTAATAAGTGGTAAAGCCCT
TCCATCCATACTGGAAAGGATAAACAGGGGGGACTGGGACGTTGCCGATG
AATACGATCCTCAAAGGCCAAATGAATATGAAAAACTTAAAGAGAAAAGT
AATGGCAGTGACAAAAATCGAGCAGGCGTAAGTGATCGAGAAGACCGAGA
TGACAAAGAAAAAGATCGTAAACGTGGACGCGTCGGTCGTCGAGAATTTT
ATAGAGACGAAGTCTCAGCCCCTAACCTGAAGCTCAGCGGGTTTGGCCAC
CGGCAAAACGATGATGACATGTACTTGCCATCTCCGGGCCTTGTAGCTAA
ACAGGGAGGTGCCACAATCGCTCCCCCTCCTTCCCTCCAAGAAATGTCCA
TTGATAGTGGTTGTGAAGCCACTAATACTATGCCATATTCTGCCAGCTCG
GTGGCCGCCAAAATTATGGCAAAATATGGGTTTAAGGATGGTCAAGGTCT
CGGAAAATCGGAGCAGGGCATGGCCATAGCTCTTCAAGTAGAGAAAACCT
CCAAACGTGGTGGACGGATCATACACGAAAAAGACGTTTTTCTGCCACCC
CTAGCATTGTCGCCACCTTCTATTGGCTCCCAAATAGGAACAAGTCCCAG
CCACAAGGCCATGCCTCCTCCCCAGATGGTAGACACGGCGGCTGAGAGTG
GTGACATCGGATACAGCATTACGGAGATTATGAAATCACCAAGCAAGGTT
GTTCTTCTACGCAACATGGTAGGACCCGGGGACGTTGACGAAGAATTGGA
ACCCGAGGTAAAAGACGAATGCAACACCAAGTACGGGGAAGTGAACAGTG
TAATCATTCACGAATCGTTCGGAACTGTGCCAGAAGATGCAGTTAAAATA
TTCGTAGAGTTTAGGCGGATCGAAAGTGCAATTAAAGCTGTAGTGGACCT
TAATGGACGTTTTTTTGGAGGACGTCAAGTGCGAGCGGGGTTTTACAACT
ATGATAAGTTTAAATGTTTCCAATTACATGCAAGCTTTCTAGACCAT

BO16432.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:23
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-RB 1116 CG17540-PB 1..1113 17..1129 5565 100 Plus
Spf45-RC 1092 CG17540-PC 41..1089 81..1129 5245 100 Plus
Spf45-RA 1212 CG17540-PA 161..1209 81..1129 5245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:24
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-RB 1354 CG17540-RB 124..1236 17..1129 5565 100 Plus
Spf45-RC 1257 CG17540-RC 91..1139 81..1129 5245 100 Plus
Spf45-RA 1397 CG17540-RA 231..1279 81..1129 5245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23067145..23068101 1037..81 4785 100 Minus
2L 23513712 2L 23066992..23067085 1129..1036 470 100 Minus
2L 23513712 2L 23068200..23068263 80..17 320 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:43:22 has no hits.

BO16432.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:47 Download gff for BO16432.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 1..1116 17..1130 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:20 Download gff for BO16432.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 185..1297 17..1129 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:14 Download gff for BO16432.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 124..1236 17..1131 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:48 Download gff for BO16432.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 185..1297 17..1129 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:51 Download gff for BO16432.complete
Subject Subject Range Query Range Percent Splice Strand
Spf45-RB 124..1236 17..1131 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:51 Download gff for BO16432.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23067145..23068101 81..1037 100 <- Minus
2L 23068200..23068263 17..80 100   Minus
2L 23066990..23067083 1038..1131 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:14 Download gff for BO16432.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22959722..22959815 1038..1131 97 <- Minus
arm_2L 22959877..22960833 81..1037 100 <- Minus
arm_2L 22960932..22960995 17..80 100   Minus

BO16432.pep Sequence

Translation from 16 to 1147

> BO16432.pep
MVFGNKNVTDPAGSKNGCQKTNPEVTCFAPITTVVSKPLISGKALPSILE
RINRGDWDVADEYDPQRPNEYEKLKEKSNGSDKNRAGVSDREDRDDKEKD
RKRGRVGRREFYRDEVSAPNLKLSGFGHRQNDDDMYLPSPGLVAKQGGAT
IAPPPSLQEMSIDSGCEATNTMPYSASSVAAKIMAKYGFKDGQGLGKSEQ
GMAIALQVEKTSKRGGRIIHEKDVFLPPLALSPPSIGSQIGTSPSHKAMP
PPQMVDTAAESGDIGYSITEIMKSPSKVVLLRNMVGPGDVDEELEPEVKD
ECNTKYGEVNSVIIHESFGTVPEDAVKIFVEFRRIESAIKAVVDLNGRFF
GGRQVRAGFYNYDKFKCFQLHASFLDH

BO16432.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:41
Subject Length Description Subject Range Query Range Score Percent Strand
Spf45-PB 371 CG17540-PB 1..371 1..371 1938 100 Plus
Spf45-PA 403 CG17540-PA 38..403 6..371 1819 95.9 Plus
Spf45-PC 363 CG17540-PC 14..363 22..371 1818 99.7 Plus
pUf68-PJ 545 CG12085-PJ 444..538 276..365 192 47.9 Plus
pUf68-PI 545 CG12085-PI 444..538 276..365 192 47.9 Plus