Clone Sequence Records
BO16432.3prime Sequence
838 bp (746 high quality bases) assembled on 2006-10-13
> BO16432.3prime
ATGGTCTAGAAAGCTTGCATGTAATTGGAAACATTTAAACTTATCATAGT
TGTAAAACCCCGCTCGCACTTGACGTCCTCCAAAAAAACGTCCATTAAGG
TCCACTACAGCTTTAATTGCACTTTCGATCCGCCTAAACTCTACGAATAT
TTTAACTGCATCTTCTGGCACAGTTCCGAACGATTCGTGAATGATTACAC
TGTTCACTTCCCCGTACTTGGTGTTGCATTCGTCTTTTACCTCGGGTTCC
AATTCTTCGTCAACGTCCCCGGGTCCTACCATGTTGCGTAGAAGAACAAC
CTTGCTTGGTGATTTCATAATCTCCGTAATGCTGTATCCGATGTCACCAC
TCTCAGCCGCCGTGTCTACCATCTGGGGAGGAGGCATGGCCTTGTGGCTG
GGACTTGTTCCTATTTGGGAGCCAATAGAAGGTGGCGACAATGCTAGGGG
TGGCAGAAAAACGTCTTTTTCGTGTATGATCCGTCCACCACGTTTGGAGG
TTTTCTCTACTTGAAGAGCTATGGCCATGCCCTGCTCCGATTTTCCGAGA
CCTTGACCATCCTTAAACCCATATTTTGCCATAATTTTGGCGGCCACCGA
GCTGGCAGAATATGGCATAGTATTAGTGGCTTCACAACCACTATCAATGG
ACATTTCTTGGAGGGAAGGAGGGGGAGCGATTGTGGCACCTCCCTGTTTA
GCTACAAGGCCCGGAGATGGCAAGTACATGTCATCATCGTTTTGCCGGTG
GGCCAACCCGCTGAGCTTCANGTTAGGGGCTGAGACTTCGTCTCTATAAA
TTCTCGACGACCGACGCGTCCACGTTTACGATCTTTTT
BO16432.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17540-PA | 1212 | CG17540-RA | 428..1209 | 800..19 | 3841 | 99.6 | Minus |
CG17540-PC | 1092 | CG17540-RC | 308..1089 | 800..19 | 3841 | 99.6 | Minus |
CG17540-PB | 1116 | CG17540-RB | 332..1113 | 800..19 | 3841 | 99.6 | Minus |
CG17540-PA | 1212 | CG17540-RA | 389..429 | 838..798 | 205 | 100 | Minus |
CG17540-PC | 1092 | CG17540-RC | 269..309 | 838..798 | 205 | 100 | Minus |
CG17540-PB | 1116 | CG17540-RB | 293..333 | 838..798 | 205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:37:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-RB | 1354 | CG17540-RB | 416..1236 | 838..19 | 4039 | 99.5 | Minus |
Spf45-RC | 1257 | CG17540-RC | 319..1139 | 838..19 | 4039 | 99.5 | Minus |
Spf45-RA | 1397 | CG17540-RA | 459..1279 | 838..19 | 4039 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:37:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 23067145..23067873 | 111..838 | 3554 | 99.5 | Plus |
2L | 23513712 | 2L | 23066992..23067085 | 19..112 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:37:33 has no hits.
BO16432.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:18 Download gff for
BO16432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17540-PB | 293..1116 | 18..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:48:19 Download gff for
BO16432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 459..1279 | 19..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:03:37 Download gff for
BO16432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 459..1279 | 19..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:03:37 Download gff for
BO16432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 23066992..23067083 | 19..110 | 100 | <- | Plus |
2L | 23067145..23067873 | 111..838 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:48:19 Download gff for
BO16432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22959724..22959815 | 19..110 | 100 | <- | Plus |
arm_2L | 22959877..22960605 | 111..838 | 99 | | Plus |
BO16432.5prime Sequence
856 bp (753 high quality bases) assembled on 2006-10-13
> BO16432.5prime
GAAGTTATCAGTCGACATGGTCTTCGGGAATAAAAATGTTACAGACCCAG
CTGGCAGTAAAAATGGCTGTCAAAAAACCAATCCAGAAGTTACATGTTTT
GCTCCAATTACTACAGTTGTATCCAAACCATTAATAAGTGGTAAAGCCCT
TCCATCCATACTGGAAAGGATAAACAGGGGGGACTGGGACGTTGCCGATG
AATACGATCCTCAAAGGCCAAATGAATATGAAAAACTTAAAGAGAAAAGT
AATGGCAGTGACAAAAATCGAGCAGGCGTAAGTGATCGAGAAGACCGAGA
TGACAAAGAAAAAGATCGTAAACGTGGACGCGTCGGTCGTCGAGAATTTT
ATAGAGACGAAGTCTCAGCCCCTAACCTGAAGCTCAGCGGGTTTGGCCAC
CGGCAAAACGATGATGACATGTACTTGCCATCTCCGGGCCTTGTAGCTAA
ACAGGGAGGTGCCACAATCGCTCCCCCTCCTTCCCTCCAAGAAATGTCCA
TTGATAGTGGTTGTGAAGCCACTAATACTATGCCATATTCTGCCAGCTCG
GTGGCCGCCAAAATTATGGCAAAATATGGGTTTAAGGATGGTCAAGGTCT
CGGAAAATCGGAGCAGGGCATGGCCATAGCTCTTCAAGTAGAGAAAACCT
CCAAACGTGGTGGACGGATCATACACGAAAAAGACGTTTTTCTGCCACCC
CTAGCATTGTCGCCACCTTCTATTGGCTCCCAAATAGGAACAAGTCCCAG
CCACAAGGCCATGCCTCCTCCCCAGATGGTAGACACGGCGGCTGAGAGTG
GTGACATCGGATACAGCATTACGGAGATTATGAAATCACCAAGCAAGGNT
GTTCTT
BO16432.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17540-PB | 1116 | CG17540-RB | 1..840 | 17..856 | 4181 | 99.8 | Plus |
CG17540-PA | 1212 | CG17540-RA | 161..936 | 81..856 | 3861 | 99.8 | Plus |
CG17540-PC | 1092 | CG17540-RC | 41..816 | 81..856 | 3861 | 99.8 | Plus |
CG17540-PA | 1212 | CG17540-RA | 54..117 | 17..80 | 320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:22:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-RB | 1354 | CG17540-RB | 124..963 | 17..856 | 4189 | 99.9 | Plus |
Spf45-RC | 1257 | CG17540-RC | 91..866 | 81..856 | 3869 | 99.9 | Plus |
Spf45-RA | 1397 | CG17540-RA | 231..1006 | 81..856 | 3869 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 23067326..23068101 | 856..81 | 3869 | 99.9 | Minus |
2L | 23513712 | 2L | 23068200..23068263 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:22:00 has no hits.
BO16432.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:19 Download gff for
BO16432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17540-PB | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:20:53 Download gff for
BO16432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RB | 124..963 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:30 Download gff for
BO16432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RB | 124..963 | 17..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:30 Download gff for
BO16432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 23067326..23068101 | 81..856 | 99 | <- | Minus |
2L | 23068200..23068263 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:20:53 Download gff for
BO16432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22960058..22960833 | 81..856 | 99 | <- | Minus |
arm_2L | 22960932..22960995 | 17..80 | 100 | | Minus |
BO16432.complete Sequence
1147 bp assembled on 2006-10-11
GenBank Submission: FJ633830
> BO16432.complete
GAAGTTATCAGTCGACATGGTCTTCGGGAATAAAAATGTTACAGACCCAG
CTGGCAGTAAAAATGGCTGTCAAAAAACCAATCCAGAAGTTACATGTTTT
GCTCCAATTACTACAGTTGTATCCAAACCATTAATAAGTGGTAAAGCCCT
TCCATCCATACTGGAAAGGATAAACAGGGGGGACTGGGACGTTGCCGATG
AATACGATCCTCAAAGGCCAAATGAATATGAAAAACTTAAAGAGAAAAGT
AATGGCAGTGACAAAAATCGAGCAGGCGTAAGTGATCGAGAAGACCGAGA
TGACAAAGAAAAAGATCGTAAACGTGGACGCGTCGGTCGTCGAGAATTTT
ATAGAGACGAAGTCTCAGCCCCTAACCTGAAGCTCAGCGGGTTTGGCCAC
CGGCAAAACGATGATGACATGTACTTGCCATCTCCGGGCCTTGTAGCTAA
ACAGGGAGGTGCCACAATCGCTCCCCCTCCTTCCCTCCAAGAAATGTCCA
TTGATAGTGGTTGTGAAGCCACTAATACTATGCCATATTCTGCCAGCTCG
GTGGCCGCCAAAATTATGGCAAAATATGGGTTTAAGGATGGTCAAGGTCT
CGGAAAATCGGAGCAGGGCATGGCCATAGCTCTTCAAGTAGAGAAAACCT
CCAAACGTGGTGGACGGATCATACACGAAAAAGACGTTTTTCTGCCACCC
CTAGCATTGTCGCCACCTTCTATTGGCTCCCAAATAGGAACAAGTCCCAG
CCACAAGGCCATGCCTCCTCCCCAGATGGTAGACACGGCGGCTGAGAGTG
GTGACATCGGATACAGCATTACGGAGATTATGAAATCACCAAGCAAGGTT
GTTCTTCTACGCAACATGGTAGGACCCGGGGACGTTGACGAAGAATTGGA
ACCCGAGGTAAAAGACGAATGCAACACCAAGTACGGGGAAGTGAACAGTG
TAATCATTCACGAATCGTTCGGAACTGTGCCAGAAGATGCAGTTAAAATA
TTCGTAGAGTTTAGGCGGATCGAAAGTGCAATTAAAGCTGTAGTGGACCT
TAATGGACGTTTTTTTGGAGGACGTCAAGTGCGAGCGGGGTTTTACAACT
ATGATAAGTTTAAATGTTTCCAATTACATGCAAGCTTTCTAGACCAT
BO16432.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-RB | 1116 | CG17540-PB | 1..1113 | 17..1129 | 5565 | 100 | Plus |
Spf45-RC | 1092 | CG17540-PC | 41..1089 | 81..1129 | 5245 | 100 | Plus |
Spf45-RA | 1212 | CG17540-PA | 161..1209 | 81..1129 | 5245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-RB | 1354 | CG17540-RB | 124..1236 | 17..1129 | 5565 | 100 | Plus |
Spf45-RC | 1257 | CG17540-RC | 91..1139 | 81..1129 | 5245 | 100 | Plus |
Spf45-RA | 1397 | CG17540-RA | 231..1279 | 81..1129 | 5245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 23067145..23068101 | 1037..81 | 4785 | 100 | Minus |
2L | 23513712 | 2L | 23066992..23067085 | 1129..1036 | 470 | 100 | Minus |
2L | 23513712 | 2L | 23068200..23068263 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:43:22 has no hits.
BO16432.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:47 Download gff for
BO16432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RB | 1..1116 | 17..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:47:20 Download gff for
BO16432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RB | 185..1297 | 17..1129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:14 Download gff for
BO16432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RB | 124..1236 | 17..1131 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:48 Download gff for
BO16432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RB | 185..1297 | 17..1129 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:51 Download gff for
BO16432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RB | 124..1236 | 17..1131 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:51 Download gff for
BO16432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 23067145..23068101 | 81..1037 | 100 | <- | Minus |
2L | 23068200..23068263 | 17..80 | 100 | | Minus |
2L | 23066990..23067083 | 1038..1131 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:14 Download gff for
BO16432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22959722..22959815 | 1038..1131 | 97 | <- | Minus |
arm_2L | 22959877..22960833 | 81..1037 | 100 | <- | Minus |
arm_2L | 22960932..22960995 | 17..80 | 100 | | Minus |
BO16432.pep Sequence
Translation from 16 to 1147
> BO16432.pep
MVFGNKNVTDPAGSKNGCQKTNPEVTCFAPITTVVSKPLISGKALPSILE
RINRGDWDVADEYDPQRPNEYEKLKEKSNGSDKNRAGVSDREDRDDKEKD
RKRGRVGRREFYRDEVSAPNLKLSGFGHRQNDDDMYLPSPGLVAKQGGAT
IAPPPSLQEMSIDSGCEATNTMPYSASSVAAKIMAKYGFKDGQGLGKSEQ
GMAIALQVEKTSKRGGRIIHEKDVFLPPLALSPPSIGSQIGTSPSHKAMP
PPQMVDTAAESGDIGYSITEIMKSPSKVVLLRNMVGPGDVDEELEPEVKD
ECNTKYGEVNSVIIHESFGTVPEDAVKIFVEFRRIESAIKAVVDLNGRFF
GGRQVRAGFYNYDKFKCFQLHASFLDH
BO16432.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-PB | 371 | CG17540-PB | 1..371 | 1..371 | 1938 | 100 | Plus |
Spf45-PA | 403 | CG17540-PA | 38..403 | 6..371 | 1819 | 95.9 | Plus |
Spf45-PC | 363 | CG17540-PC | 14..363 | 22..371 | 1818 | 99.7 | Plus |
pUf68-PJ | 545 | CG12085-PJ | 444..538 | 276..365 | 192 | 47.9 | Plus |
pUf68-PI | 545 | CG12085-PI | 444..538 | 276..365 | 192 | 47.9 | Plus |