Clone Sequence Records
BO16437.3prime Sequence
612 bp (518 high quality bases) assembled on 2006-10-13
> BO16437.3prime
ATGGTCTAGAAAGCTTGCAAATTCGTTCTTATGGACTGCTATATACTGTT
TGTAGAGTCGCTGCTTGATAAACAGATATAGTTCGATTTCGAAGGAGAAA
CTGCTCTTCAGATACTCCTCCACATCCTTATCCAGATGAGTGTCATGCGA
AACATTGTTTATCGTAAAATTTTCAGTATTGCTGTAGTAGACTTTTGTGG
CGTCGGTAAAAAACCGCGGTATGTAGGCTTCTAACACGGCCAATGTCACA
TTTGTGTCCTCCCAACTACCCACAACGGCGTACTCCCGTTCCACATTCAT
TTTGGCGATTTGCGTTGTAGTTTCCGAGTTGAAATGCGTGCAAATTTCCG
AGTTGCCACAAAGATGTAGAGAGAACCTCCTCCAATCGCCGTTGAAGGGA
TTGTGTGCGTCGAAAACACAATGCGGGCGCACCCGCTTTCTGACGCAATC
ATTGAAGTTGGTGTCGAAGAATTTCTTGGTCTGCATCGGCTTATTGGGAT
TGCGCAACAAGCTCTGGGCGAAGATCAGCGGATGGCGTTGGTAGTAGTAG
GCACTAATCACCTTCTGAATGGGATGGCGAACCATGTTGATGTAGATGGG
ACGCGGACTGTC
BO16437.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9614-PF | 1194 | pip-RF | 598..1191 | 612..19 | 2970 | 100 | Minus |
CG9614-PD | 1257 | pip-RD | 907..933 | 306..280 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pip-RF | 1441 | CG9614-RF | 777..1370 | 612..19 | 2970 | 100 | Minus |
pip-RD | 1509 | CG9614-RD | 1086..1169 | 306..223 | 180 | 81 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19307323..19307598 | 337..612 | 1380 | 100 | Plus |
3L | 28110227 | 3L | 19306722..19306885 | 19..182 | 820 | 100 | Plus |
3L | 28110227 | 3L | 19306947..19307102 | 182..337 | 780 | 100 | Plus |
3L | 28110227 | 3L | 19305780..19305863 | 223..306 | 180 | 81 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:05:17 has no hits.
BO16437.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:23 Download gff for
BO16437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9614-PF | 598..1194 | 18..612 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:29 Download gff for
BO16437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pip-RF | 777..1370 | 19..612 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:50 Download gff for
BO16437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pip-RF | 777..1370 | 19..612 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:50 Download gff for
BO16437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19307324..19307598 | 338..612 | 100 | | Plus |
3L | 19306722..19306885 | 19..182 | 100 | <- | Plus |
3L | 19306948..19307102 | 183..337 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:29 Download gff for
BO16437.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19299822..19299985 | 19..182 | 100 | <- | Plus |
arm_3L | 19300048..19300202 | 183..337 | 100 | <- | Plus |
arm_3L | 19300424..19300698 | 338..612 | 100 | | Plus |
BO16437.5prime Sequence
659 bp (591 high quality bases) assembled on 2006-10-13
> BO16437.5prime
GAAGTTATCAGTCGACATGTCTCTGAACGCCGAGCGATCGTACAAAATGA
AACTGCGCGATGTGGAAAATGCCTTCAAATACCGGCGCATACCGTATCCC
AAGCGTTCCGTCGAGCTGATCGCCCTGCTGGCTATTTCGTGCACCTTCTT
CCTGTTCATGCACACCAACAAACTGAACAGTCGCCTCAAGGAGATGGAGG
TGAAGCTGCAGCCATCGGAGTTTTCGGCCCTCGGTCTAACGGGCAACCAC
ATCAGCGGACACGATGCGGGCAAGCACGATGACATCAACACCCTGCACGG
CACCTACCAATATCTGAAGAGCACTGGCCAGCTGGAAAATTTGGAGCCCG
CCCATTTGAATAATACCCCCAAAGCGGAGCGTGATTTCATATTCTACAAT
CGCCTGGAAAAGACAGGAAGTCAGTCAATGACGCGACTCATCAAGCAGCT
GGGTGATCGTCTTGGATTTGACACCTACAGAAATATCGTGCGTCCCTCGA
GGTCGATTACCGAATCCGAGGAGGATGAGAAGGATCTGGTGGAGCAGCTC
TTCGAGCTGGGGGAACACGCGGTCTACGTGGAGCACGCCAATTGGGTCAA
CTTCACACAGCACGACAGTCCGCGTCCCATCTACATCAACATGGTTCGCC
ATCCCATTC
BO16437.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9614-PF | 1194 | pip-RF | 1..643 | 17..659 | 3215 | 100 | Plus |
CG9614-PC | 1212 | pip-RC | 1..318 | 17..334 | 1590 | 100 | Plus |
CG9614-PK | 1221 | pip-RK | 1..317 | 17..333 | 1585 | 100 | Plus |
CG9614-PG | 1224 | pip-RG | 1..317 | 17..333 | 1585 | 100 | Plus |
CG9614-PI | 1077 | pip-RI | 1..317 | 17..333 | 1585 | 100 | Plus |
CG9614-PJ | 1206 | pip-RJ | 1..317 | 17..333 | 1585 | 100 | Plus |
CG9614-PL | 1545 | pip-RL | 1..315 | 17..331 | 1575 | 100 | Plus |
CG9614-PA | 1242 | pip-RA | 1..315 | 17..331 | 1575 | 100 | Plus |
CG9614-PD | 1257 | pip-RD | 1..315 | 17..331 | 1575 | 100 | Plus |
CG9614-PE | 1230 | pip-RE | 1..315 | 17..331 | 1575 | 100 | Plus |
CG9614-PH | 1218 | pip-RH | 1..315 | 17..331 | 1575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pip-RF | 1441 | CG9614-RF | 180..822 | 17..659 | 3215 | 100 | Plus |
pip-RC | 1397 | CG9614-RC | 180..497 | 17..334 | 1590 | 100 | Plus |
pip-RM | 2975 | CG9614-RM | 180..496 | 17..333 | 1585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19307553..19307882 | 659..330 | 1650 | 100 | Minus |
3L | 28110227 | 3L | 19318784..19318951 | 272..105 | 840 | 100 | Minus |
3L | 28110227 | 3L | 19337342..19337430 | 105..17 | 445 | 100 | Minus |
3L | 28110227 | 3L | 19313156..19313214 | 331..273 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:05:23 has no hits.
BO16437.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:24 Download gff for
BO16437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9614-PF | 1..643 | 17..659 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:31 Download gff for
BO16437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pip-RF | 174..822 | 9..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:59 Download gff for
BO16437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pip-RF | 174..822 | 9..659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:59 Download gff for
BO16437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19307553..19307880 | 332..659 | 100 | <- | Minus |
3L | 19313156..19313214 | 273..331 | 100 | <- | Minus |
3L | 19318784..19318950 | 106..272 | 100 | <- | Minus |
3L | 19337342..19337436 | 9..105 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:31 Download gff for
BO16437.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19306256..19306314 | 273..331 | 100 | <- | Minus |
arm_3L | 19311884..19312050 | 106..272 | 100 | <- | Minus |
arm_3L | 19330442..19330536 | 9..105 | 95 | | Minus |
arm_3L | 19300653..19300980 | 332..659 | 100 | <- | Minus |
BO16437.complete Sequence
1225 bp assembled on 2006-10-11
GenBank Submission: FJ633831
> BO16437.complete
GAAGTTATCAGTCGACATGTCTCTGAACGCCGAGCGATCGTACAAAATGA
AACTGCGCGATGTGGAAAATGCCTTCAAATACCGGCGCATACCGTATCCC
AAGCGTTCCGTCGAGCTGATCGCCCTGCTGGCTATTTCGTGCACCTTCTT
CCTGTTCATGCACACCAACAAACTGAACAGTCGCCTCAAGGAGATGGAGG
TGAAGCTGCAGCCATCGGAGTTTTCGGCCCTCGGTCTAACGGGCAACCAC
ATCAGCGGACACGATGCGGGCAAGCACGATGACATCAACACCCTGCACGG
CACCTACCAATATCTGAAGAGCACTGGCCAGCTGGAAAATTTGGAGCCCG
CCCATTTGAATAATACCCCCAAAGCGGAGCGTGATTTCATATTCTACAAT
CGCCTGGAAAAGACAGGAAGTCAGTCAATGACGCGACTCATCAAGCAGCT
GGGTGATCGTCTTGGATTTGACACCTACAGAAATATCGTGCGTCCCTCGA
GGTCGATTACCGAATCCGAGGAGGATGAGAAGGATCTGGTGGAGCAGCTC
TTCGAGCTGGGGGAACACGCGGTCTACGTGGAGCACGCCAATTGGGTCAA
CTTCACACAGCACGACAGTCCGCGTCCCATCTACATCAACATGGTTCGCC
ATCCCATTCAGAAGGTGATTAGTGCCTACTACTACCAACGCCATCCGCTG
ATCTTCGCCCAGAGCTTGTTGCGCAATCCCAATAAGCCGATGCAGACCAA
GAAATTCTTCGACACCAACTTCAATGATTGCGTCAGAAAGCGGGTGCGCC
CGCATTGTGTTTTCGACGCACACAATCCCTTCAACGGCGATTGGAGGAGG
TTCTCTCTACATCTTTGTGGCAACTCGGAAATTTGCACGCATTTCAACTC
GGAAACTACAACGCAAATCGCCAAAATGAATGTGGAACGGGAGTACGCCG
TTGTGGGTAGTTGGGAGGACACAAATGTGACATTGGCCGTGTTAGAAGCC
TACATACCGCGGTTTTTTACCGACGCCACAAAAGTCTACTACAGCAATAC
TGAAAATTTTACGATAAACAATGTTTCGCATGACACTCATCTGGATAAGG
ATGTGGAGGAGTATCTGAAGAGCAGTTTCTCCTTCGAAATCGAACTATAT
CTGTTTATCAAGCAGCGACTCTACAAACAGTATATAGCAGTCCATAAGAA
CGAATTTGCAAGCTTTCTAGACCAT
BO16437.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pip-RF | 1194 | CG9614-PF | 1..1191 | 17..1207 | 5955 | 100 | Plus |
pip-RC | 1212 | CG9614-PC | 1..318 | 17..334 | 1590 | 100 | Plus |
pip-RM | 879 | CG9614-PM | 1..317 | 17..333 | 1585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pip-RF | 1441 | CG9614-RF | 180..1370 | 17..1207 | 5955 | 100 | Plus |
pip-RC | 1397 | CG9614-RC | 180..497 | 17..334 | 1590 | 100 | Plus |
pip-RM | 2975 | CG9614-RM | 180..496 | 17..333 | 1585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19307323..19307882 | 889..330 | 2800 | 100 | Minus |
3L | 28110227 | 3L | 19318784..19318951 | 272..105 | 840 | 100 | Minus |
3L | 28110227 | 3L | 19306722..19306885 | 1207..1044 | 820 | 100 | Minus |
3L | 28110227 | 3L | 19306947..19307102 | 1044..889 | 780 | 100 | Minus |
3L | 28110227 | 3L | 19337342..19337430 | 105..17 | 445 | 100 | Minus |
3L | 28110227 | 3L | 19313156..19313214 | 331..273 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:33:47 has no hits.
BO16437.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:50 Download gff for
BO16437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pip-RF | 1..1194 | 17..1208 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:11 Download gff for
BO16437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pip-RF | 170..1360 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:20 Download gff for
BO16437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pip-RF | 180..1370 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:50 Download gff for
BO16437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pip-RF | 164..1360 | 9..1207 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:11 Download gff for
BO16437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pip-RF | 180..1370 | 17..1209 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:11 Download gff for
BO16437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19318784..19318950 | 106..272 | 100 | <- | Minus |
3L | 19337342..19337430 | 17..105 | 100 | | Minus |
3L | 19306720..19306885 | 1044..1209 | 98 | <- | Minus |
3L | 19306948..19307102 | 889..1043 | 100 | <- | Minus |
3L | 19307324..19307880 | 332..888 | 100 | <- | Minus |
3L | 19313156..19313214 | 273..331 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:20 Download gff for
BO16437.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19311884..19312050 | 106..272 | 100 | <- | Minus |
arm_3L | 19330442..19330530 | 17..105 | 100 | | Minus |
arm_3L | 19299820..19299985 | 1044..1209 | 98 | <- | Minus |
arm_3L | 19300048..19300202 | 889..1043 | 100 | <- | Minus |
arm_3L | 19300424..19300980 | 332..888 | 100 | <- | Minus |
arm_3L | 19306256..19306314 | 273..331 | 100 | <- | Minus |
BO16437.pep Sequence
Translation from 16 to 1225
> BO16437.pep
MSLNAERSYKMKLRDVENAFKYRRIPYPKRSVELIALLAISCTFFLFMHT
NKLNSRLKEMEVKLQPSEFSALGLTGNHISGHDAGKHDDINTLHGTYQYL
KSTGQLENLEPAHLNNTPKAERDFIFYNRLEKTGSQSMTRLIKQLGDRLG
FDTYRNIVRPSRSITESEEDEKDLVEQLFELGEHAVYVEHANWVNFTQHD
SPRPIYINMVRHPIQKVISAYYYQRHPLIFAQSLLRNPNKPMQTKKFFDT
NFNDCVRKRVRPHCVFDAHNPFNGDWRRFSLHLCGNSEICTHFNSETTTQ
IAKMNVEREYAVVGSWEDTNVTLAVLEAYIPRFFTDATKVYYSNTENFTI
NNVSHDTHLDKDVEEYLKSSFSFEIELYLFIKQRLYKQYIAVHKNEFASF
LDH
BO16437.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pip-PF | 397 | CG9614-PF | 1..397 | 1..397 | 2110 | 100 | Plus |
pip-PD | 418 | CG9614-PD | 1..397 | 1..396 | 1163 | 57.9 | Plus |
pip-PG | 407 | CG9614-PG | 1..399 | 1..396 | 1094 | 55.5 | Plus |
pip-PH | 405 | CG9614-PH | 1..398 | 1..396 | 1086 | 55.1 | Plus |
pip-PA | 413 | CG9614-PA | 1..395 | 1..393 | 1065 | 53.8 | Plus |