Clone BO16437 Report

Search the DGRC for BO16437

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:164
Well:37
Vector:pDNR-Dual
Associated Gene/Transcriptpip-RF
Protein status:BO16437.pep: validated full length
Sequenced Size:1225

Clone Sequence Records

BO16437.3prime Sequence

612 bp (518 high quality bases) assembled on 2006-10-13

> BO16437.3prime
ATGGTCTAGAAAGCTTGCAAATTCGTTCTTATGGACTGCTATATACTGTT
TGTAGAGTCGCTGCTTGATAAACAGATATAGTTCGATTTCGAAGGAGAAA
CTGCTCTTCAGATACTCCTCCACATCCTTATCCAGATGAGTGTCATGCGA
AACATTGTTTATCGTAAAATTTTCAGTATTGCTGTAGTAGACTTTTGTGG
CGTCGGTAAAAAACCGCGGTATGTAGGCTTCTAACACGGCCAATGTCACA
TTTGTGTCCTCCCAACTACCCACAACGGCGTACTCCCGTTCCACATTCAT
TTTGGCGATTTGCGTTGTAGTTTCCGAGTTGAAATGCGTGCAAATTTCCG
AGTTGCCACAAAGATGTAGAGAGAACCTCCTCCAATCGCCGTTGAAGGGA
TTGTGTGCGTCGAAAACACAATGCGGGCGCACCCGCTTTCTGACGCAATC
ATTGAAGTTGGTGTCGAAGAATTTCTTGGTCTGCATCGGCTTATTGGGAT
TGCGCAACAAGCTCTGGGCGAAGATCAGCGGATGGCGTTGGTAGTAGTAG
GCACTAATCACCTTCTGAATGGGATGGCGAACCATGTTGATGTAGATGGG
ACGCGGACTGTC

BO16437.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9614-PF 1194 pip-RF 598..1191 612..19 2970 100 Minus
CG9614-PD 1257 pip-RD 907..933 306..280 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
pip-RF 1441 CG9614-RF 777..1370 612..19 2970 100 Minus
pip-RD 1509 CG9614-RD 1086..1169 306..223 180 81 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19307323..19307598 337..612 1380 100 Plus
3L 28110227 3L 19306722..19306885 19..182 820 100 Plus
3L 28110227 3L 19306947..19307102 182..337 780 100 Plus
3L 28110227 3L 19305780..19305863 223..306 180 81 Plus
Blast to na_te.dros performed on 2015-02-11 09:05:17 has no hits.

BO16437.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:23 Download gff for BO16437.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9614-PF 598..1194 18..612 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:29 Download gff for BO16437.3prime
Subject Subject Range Query Range Percent Splice Strand
pip-RF 777..1370 19..612 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:50 Download gff for BO16437.3prime
Subject Subject Range Query Range Percent Splice Strand
pip-RF 777..1370 19..612 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:50 Download gff for BO16437.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19307324..19307598 338..612 100   Plus
3L 19306722..19306885 19..182 100 <- Plus
3L 19306948..19307102 183..337 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:29 Download gff for BO16437.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19299822..19299985 19..182 100 <- Plus
arm_3L 19300048..19300202 183..337 100 <- Plus
arm_3L 19300424..19300698 338..612 100   Plus

BO16437.5prime Sequence

659 bp (591 high quality bases) assembled on 2006-10-13

> BO16437.5prime
GAAGTTATCAGTCGACATGTCTCTGAACGCCGAGCGATCGTACAAAATGA
AACTGCGCGATGTGGAAAATGCCTTCAAATACCGGCGCATACCGTATCCC
AAGCGTTCCGTCGAGCTGATCGCCCTGCTGGCTATTTCGTGCACCTTCTT
CCTGTTCATGCACACCAACAAACTGAACAGTCGCCTCAAGGAGATGGAGG
TGAAGCTGCAGCCATCGGAGTTTTCGGCCCTCGGTCTAACGGGCAACCAC
ATCAGCGGACACGATGCGGGCAAGCACGATGACATCAACACCCTGCACGG
CACCTACCAATATCTGAAGAGCACTGGCCAGCTGGAAAATTTGGAGCCCG
CCCATTTGAATAATACCCCCAAAGCGGAGCGTGATTTCATATTCTACAAT
CGCCTGGAAAAGACAGGAAGTCAGTCAATGACGCGACTCATCAAGCAGCT
GGGTGATCGTCTTGGATTTGACACCTACAGAAATATCGTGCGTCCCTCGA
GGTCGATTACCGAATCCGAGGAGGATGAGAAGGATCTGGTGGAGCAGCTC
TTCGAGCTGGGGGAACACGCGGTCTACGTGGAGCACGCCAATTGGGTCAA
CTTCACACAGCACGACAGTCCGCGTCCCATCTACATCAACATGGTTCGCC
ATCCCATTC

BO16437.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9614-PF 1194 pip-RF 1..643 17..659 3215 100 Plus
CG9614-PC 1212 pip-RC 1..318 17..334 1590 100 Plus
CG9614-PK 1221 pip-RK 1..317 17..333 1585 100 Plus
CG9614-PG 1224 pip-RG 1..317 17..333 1585 100 Plus
CG9614-PI 1077 pip-RI 1..317 17..333 1585 100 Plus
CG9614-PJ 1206 pip-RJ 1..317 17..333 1585 100 Plus
CG9614-PL 1545 pip-RL 1..315 17..331 1575 100 Plus
CG9614-PA 1242 pip-RA 1..315 17..331 1575 100 Plus
CG9614-PD 1257 pip-RD 1..315 17..331 1575 100 Plus
CG9614-PE 1230 pip-RE 1..315 17..331 1575 100 Plus
CG9614-PH 1218 pip-RH 1..315 17..331 1575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
pip-RF 1441 CG9614-RF 180..822 17..659 3215 100 Plus
pip-RC 1397 CG9614-RC 180..497 17..334 1590 100 Plus
pip-RM 2975 CG9614-RM 180..496 17..333 1585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19307553..19307882 659..330 1650 100 Minus
3L 28110227 3L 19318784..19318951 272..105 840 100 Minus
3L 28110227 3L 19337342..19337430 105..17 445 100 Minus
3L 28110227 3L 19313156..19313214 331..273 295 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:05:23 has no hits.

BO16437.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:51:24 Download gff for BO16437.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9614-PF 1..643 17..659 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 16:59:31 Download gff for BO16437.5prime
Subject Subject Range Query Range Percent Splice Strand
pip-RF 174..822 9..659 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:48:59 Download gff for BO16437.5prime
Subject Subject Range Query Range Percent Splice Strand
pip-RF 174..822 9..659 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:48:59 Download gff for BO16437.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19307553..19307880 332..659 100 <- Minus
3L 19313156..19313214 273..331 100 <- Minus
3L 19318784..19318950 106..272 100 <- Minus
3L 19337342..19337436 9..105 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 16:59:31 Download gff for BO16437.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19306256..19306314 273..331 100 <- Minus
arm_3L 19311884..19312050 106..272 100 <- Minus
arm_3L 19330442..19330536 9..105 95   Minus
arm_3L 19300653..19300980 332..659 100 <- Minus

BO16437.complete Sequence

1225 bp assembled on 2006-10-11

GenBank Submission: FJ633831

> BO16437.complete
GAAGTTATCAGTCGACATGTCTCTGAACGCCGAGCGATCGTACAAAATGA
AACTGCGCGATGTGGAAAATGCCTTCAAATACCGGCGCATACCGTATCCC
AAGCGTTCCGTCGAGCTGATCGCCCTGCTGGCTATTTCGTGCACCTTCTT
CCTGTTCATGCACACCAACAAACTGAACAGTCGCCTCAAGGAGATGGAGG
TGAAGCTGCAGCCATCGGAGTTTTCGGCCCTCGGTCTAACGGGCAACCAC
ATCAGCGGACACGATGCGGGCAAGCACGATGACATCAACACCCTGCACGG
CACCTACCAATATCTGAAGAGCACTGGCCAGCTGGAAAATTTGGAGCCCG
CCCATTTGAATAATACCCCCAAAGCGGAGCGTGATTTCATATTCTACAAT
CGCCTGGAAAAGACAGGAAGTCAGTCAATGACGCGACTCATCAAGCAGCT
GGGTGATCGTCTTGGATTTGACACCTACAGAAATATCGTGCGTCCCTCGA
GGTCGATTACCGAATCCGAGGAGGATGAGAAGGATCTGGTGGAGCAGCTC
TTCGAGCTGGGGGAACACGCGGTCTACGTGGAGCACGCCAATTGGGTCAA
CTTCACACAGCACGACAGTCCGCGTCCCATCTACATCAACATGGTTCGCC
ATCCCATTCAGAAGGTGATTAGTGCCTACTACTACCAACGCCATCCGCTG
ATCTTCGCCCAGAGCTTGTTGCGCAATCCCAATAAGCCGATGCAGACCAA
GAAATTCTTCGACACCAACTTCAATGATTGCGTCAGAAAGCGGGTGCGCC
CGCATTGTGTTTTCGACGCACACAATCCCTTCAACGGCGATTGGAGGAGG
TTCTCTCTACATCTTTGTGGCAACTCGGAAATTTGCACGCATTTCAACTC
GGAAACTACAACGCAAATCGCCAAAATGAATGTGGAACGGGAGTACGCCG
TTGTGGGTAGTTGGGAGGACACAAATGTGACATTGGCCGTGTTAGAAGCC
TACATACCGCGGTTTTTTACCGACGCCACAAAAGTCTACTACAGCAATAC
TGAAAATTTTACGATAAACAATGTTTCGCATGACACTCATCTGGATAAGG
ATGTGGAGGAGTATCTGAAGAGCAGTTTCTCCTTCGAAATCGAACTATAT
CTGTTTATCAAGCAGCGACTCTACAAACAGTATATAGCAGTCCATAAGAA
CGAATTTGCAAGCTTTCTAGACCAT

BO16437.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
pip-RF 1194 CG9614-PF 1..1191 17..1207 5955 100 Plus
pip-RC 1212 CG9614-PC 1..318 17..334 1590 100 Plus
pip-RM 879 CG9614-PM 1..317 17..333 1585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:33:50
Subject Length Description Subject Range Query Range Score Percent Strand
pip-RF 1441 CG9614-RF 180..1370 17..1207 5955 100 Plus
pip-RC 1397 CG9614-RC 180..497 17..334 1590 100 Plus
pip-RM 2975 CG9614-RM 180..496 17..333 1585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19307323..19307882 889..330 2800 100 Minus
3L 28110227 3L 19318784..19318951 272..105 840 100 Minus
3L 28110227 3L 19306722..19306885 1207..1044 820 100 Minus
3L 28110227 3L 19306947..19307102 1044..889 780 100 Minus
3L 28110227 3L 19337342..19337430 105..17 445 100 Minus
3L 28110227 3L 19313156..19313214 331..273 295 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:33:47 has no hits.

BO16437.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:27:50 Download gff for BO16437.complete
Subject Subject Range Query Range Percent Splice Strand
pip-RF 1..1194 17..1208 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:11 Download gff for BO16437.complete
Subject Subject Range Query Range Percent Splice Strand
pip-RF 170..1360 17..1209 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:20 Download gff for BO16437.complete
Subject Subject Range Query Range Percent Splice Strand
pip-RF 180..1370 17..1209 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:27:50 Download gff for BO16437.complete
Subject Subject Range Query Range Percent Splice Strand
pip-RF 164..1360 9..1207 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:11 Download gff for BO16437.complete
Subject Subject Range Query Range Percent Splice Strand
pip-RF 180..1370 17..1209 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:11 Download gff for BO16437.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19318784..19318950 106..272 100 <- Minus
3L 19337342..19337430 17..105 100   Minus
3L 19306720..19306885 1044..1209 98 <- Minus
3L 19306948..19307102 889..1043 100 <- Minus
3L 19307324..19307880 332..888 100 <- Minus
3L 19313156..19313214 273..331 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:20 Download gff for BO16437.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19311884..19312050 106..272 100 <- Minus
arm_3L 19330442..19330530 17..105 100   Minus
arm_3L 19299820..19299985 1044..1209 98 <- Minus
arm_3L 19300048..19300202 889..1043 100 <- Minus
arm_3L 19300424..19300980 332..888 100 <- Minus
arm_3L 19306256..19306314 273..331 100 <- Minus

BO16437.pep Sequence

Translation from 16 to 1225

> BO16437.pep
MSLNAERSYKMKLRDVENAFKYRRIPYPKRSVELIALLAISCTFFLFMHT
NKLNSRLKEMEVKLQPSEFSALGLTGNHISGHDAGKHDDINTLHGTYQYL
KSTGQLENLEPAHLNNTPKAERDFIFYNRLEKTGSQSMTRLIKQLGDRLG
FDTYRNIVRPSRSITESEEDEKDLVEQLFELGEHAVYVEHANWVNFTQHD
SPRPIYINMVRHPIQKVISAYYYQRHPLIFAQSLLRNPNKPMQTKKFFDT
NFNDCVRKRVRPHCVFDAHNPFNGDWRRFSLHLCGNSEICTHFNSETTTQ
IAKMNVEREYAVVGSWEDTNVTLAVLEAYIPRFFTDATKVYYSNTENFTI
NNVSHDTHLDKDVEEYLKSSFSFEIELYLFIKQRLYKQYIAVHKNEFASF
LDH

BO16437.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:30
Subject Length Description Subject Range Query Range Score Percent Strand
pip-PF 397 CG9614-PF 1..397 1..397 2110 100 Plus
pip-PD 418 CG9614-PD 1..397 1..396 1163 57.9 Plus
pip-PG 407 CG9614-PG 1..399 1..396 1094 55.5 Plus
pip-PH 405 CG9614-PH 1..398 1..396 1086 55.1 Plus
pip-PA 413 CG9614-PA 1..395 1..393 1065 53.8 Plus